CmoCh04G015220 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G015220
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 7782810 .. 7785558 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCTTTTCTCCTTTGCTGGCTCAGAGCTCTTTGATTGTGTTGTGTCAATGGATGTTTCCTCATCTGATGGCGCCGTGCTCTTTGACTCGTTTGTGTTATTGGAGGTTTGCTCCTCTGATGCCTTTGTGTTGTTTGGTAACCTATGAATTACTGTCTCCTTGTCGAATTTCAGAATGTATGCCTGATTGCACCCTTCGTACAGCCGCTCGCCCAAGGTATCTATGATGTAGTAAGCATCCTTGTCAACCTTCAGGATGAAGAAGTGGTCATTCCAACTCACAATGTATACTATCGATTCGCCTACACTTGTTTGATGGTCTGCTGCTAGTAGGCTGATTTCATCCCATATGGTGTCAAAAGACATGGCGCCTTTGAGGAACTCGAAAACACCCTCTTCCTCCAGCCCTTCTGGGTGGAAGAATCCAACATATGACTTCTCTGCAACAACAGATAGAGGTCGGATTTTTGCATCAATTACCGTGTCAAGATCGAAGTGTTTATCAGAGAACTGTTCCATGTAGTCTTTATTTTCACAAAGGTTCCTCCATTCTGCTGATCCTTCTCTGATCAAATTGTCCAGTTCAGACTTGACAGGCATTTCTTCTTGGTTGGATAGCAACCAATCAGCAATAACAGCAACTAGAGCCGTGCAGGCGCTTTCCCCAGAAGCACGTTCGCTCCTTTGATCAATAGAGGCAAAGAAGACTTCAGTTTCGATCTTCAAGCCTCCGTCACGGCTAGTTATCTCCTTCTGCTCCCAAGTACCTACAGCGAAGTTATCGTCCCCAAATGCAGCTGCTGATAACTCCAAACTATACCACTGCAAGAAGAAGAAGGAGAAGAGGAGGCCACTATTAGTACGGTTTTAAGTAAAGCAGAGTAAAATGCAGTTCAGGTCCTGAGTACATACCCAAGAGAAAAGCTCATTTGTGCTGAGCTGCCTACGGTAAAAGTCGATGTCGTCTCCACCGTCTTCACCATAATGTTTCTTCAGAAGAGGCTCTCCTTTAAATTTAGGAGATTTGAAGCTCAACTTCCTCTTCCTCCATGACAAGATTTTGCTCATTGAGTTCTGTCTTGTTTGTGAATTATCAATATCATCCTTTTCTAAGCATCCTGCACCATTGCCACAATATATCCAACATTCATCATCTCCATTGTTGGTCTTTGTTCCAGGGAGAAGCAATTCTGCCACACGGTTTGCATGGGCGAGTTTTTCATAGCCTAATGGCTTCCTAACACATGAATCCTCATTCCCACCATCCAGCGAATCCGAATCAAGTGAAGAACTGTGAGTCCAATCCTTATCTTCAATATAAAACCTATCGACAGTGGCAATAGCTTCTTCACGGAGTACTTTAGCTCTTCCAGCTGATACACAGTGTCCAAATATTTTCACTTTATCTAGACCTGCTCTTATTGCAGCTAACCCATCTTTCTCTGCAGACAAAGTCAACGGTGAAGGCGGGGAGAGCGTAACAGGCATAATCGACCTTTGCACCATCATCAAAGGTTTTGTAGCTCTCAGCTCCAAGAGGTTGAGAGATAACTGCGTAATCGAAAACGAACTTCATCAGAAAAAAAGAAAATTGCAGGGAATATGATGCTATGCACTTTCTTTCAGATTTCATCTCCTTGAAGGCTGGAAGAACACACACAGTTTGTGCTGGTAACTTGGGAGATACTACTTACAAGGAGCAAGGGGCTGAACTCTGGAGTGCTGCCACGAACCTTCAAAGGAAGGCTTATTTGAATCTCCTTTCCATCAGCTTTGGAAGCATACTCTGCTAGGTTCAGTGATGCGGTTCCTACAACAGTATAGCTATTCCGAAGTACTTGGTTTTCTCCCTGTAATCACAGCTGACTGAGTAAGAATTTGGAACGCTGCCCAACCACAAGAAGCTCCCCTCAAACAAGAGAAAATTTTGGCACAGATCCCCAAAGAAAAAGGTATTATGAGCCCTTTCAGATCATTTATTTGAGTATTCAACATATGGGGATGATCCCTTCTATCCATTCAGGTATTGTTTACTTGGGGTTTTTTCATTCGGGCTTCCCCTTAAAGTTTTTAAAACACGTCTGCTAAGGAGAAATTTCCACACTCTTATAGAAGATGATTTGCTCTCCTCCTTAACCGAGGTGGGATTTCACGCCTTCCAATTCGAACATTAATTAGTGTAATTTTATTTATTTATTTTGTGTTTATATTTACCTAATCTTGAATTATTTCATGAATTTTCATCAACTGTTCATCTATTTTATGCAGGCCAAGCAATGTTCTGTTTCTTCCTTATGAGAGCTGAGGAAATCTGGTAAGAACACTATATATACTCCTATGTTAATTGTGAATTATTTGATATATTCAATTCATAAAGTGACAAATTATTGATATAGAAAAAGTCAAACACTGAATATCAAAAGAAAATTGGAATATCAACATCCTCATTGTTCATCCATACGTCATCCACTAGCCCCAACCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTTCCACACTCTTATAGAAGATGATTTGCTCTCCTCCTTAACCGAGGTGGGATTTCACGCCTTCCAATTCGAACATTAATTAGTGTAATTTTATTTATTTATTTTGTGTTTATATTTACCTAATCTTGAATTATTTCATGAATTTTCATCAACTGTTCATCTATTTTATGCAGGCCAAGCAATGTTCTGTTTCTTCCTTATGAGAGCTGA

mRNA sequence

ATGGTGCTTTTCTCCTTTGCTGGCTCAGAGCTCTTTGATTGTGTTGTGTCAATGGATGTTTCCTCATCTGATGGCGCCGTGCTCTTTGACTCGTTTGTGTTATTGGAGGTTTGCTCCTCTGATGCCTTTGTGTTGTTTGAATGTATGCCTGATTGCACCCTTCGTACAGCCGCTCGCCCAAGGCTGATTTCATCCCATATGGTGTCAAAAGACATGGCGCCTTTGAGGAACTCGAAAACACCCTCTTCCTCCAGCCCTTCTGGGTGGAAGAATCCAACATATGACTTCTCTGCAACAACAGATAGAGGTCGGATTTTTGCATCAATTACCGTGTCAAGATCGAAGTTCCTCCATTCTGCTGATCCTTCTCTGATCAAATTGTCCAGTTCAGACTTGACAGGCATTTCTTCTTGGTTGGATAGCAACCAATCAGCAATAACAGCAACTAGAGCCGTGCAGGCGCTTTCCCCAGAAGCACAGGCAAAGAAGACTTCAGTTTCGATCTTCAAGCCTCCGTCACGGCTAGTTATCTCCTTCTGCTCCCAAGTACCTACAGCGAAGTTATCGTCCCCAAATGCAGCTGCTGATAACTCCAAACTATACCACTGCAAGAAGAAGAAGGAGAAGAGGAGGCCACTATTAGTACGACCTGCTCTTATTGCAGCTAACCCATCTTTCTCTGCAGACAAAGTCAACGGTGAAGGCGGGGAGAGCGTAACAGGCATAATCGACCTTTGCACCATCATCAAAGATTTCATCTCCTTGAAGGCTGGAAGAACACACACAGTTTGTGCTGGCCAAGCAATGTTCTGTTTCTTCCTTATGAGAGCTGAGGAAATCTGGCCAAGCAATGTTCTGTTTCTTCCTTATGAGAGCTGA

Coding sequence (CDS)

ATGGTGCTTTTCTCCTTTGCTGGCTCAGAGCTCTTTGATTGTGTTGTGTCAATGGATGTTTCCTCATCTGATGGCGCCGTGCTCTTTGACTCGTTTGTGTTATTGGAGGTTTGCTCCTCTGATGCCTTTGTGTTGTTTGAATGTATGCCTGATTGCACCCTTCGTACAGCCGCTCGCCCAAGGCTGATTTCATCCCATATGGTGTCAAAAGACATGGCGCCTTTGAGGAACTCGAAAACACCCTCTTCCTCCAGCCCTTCTGGGTGGAAGAATCCAACATATGACTTCTCTGCAACAACAGATAGAGGTCGGATTTTTGCATCAATTACCGTGTCAAGATCGAAGTTCCTCCATTCTGCTGATCCTTCTCTGATCAAATTGTCCAGTTCAGACTTGACAGGCATTTCTTCTTGGTTGGATAGCAACCAATCAGCAATAACAGCAACTAGAGCCGTGCAGGCGCTTTCCCCAGAAGCACAGGCAAAGAAGACTTCAGTTTCGATCTTCAAGCCTCCGTCACGGCTAGTTATCTCCTTCTGCTCCCAAGTACCTACAGCGAAGTTATCGTCCCCAAATGCAGCTGCTGATAACTCCAAACTATACCACTGCAAGAAGAAGAAGGAGAAGAGGAGGCCACTATTAGTACGACCTGCTCTTATTGCAGCTAACCCATCTTTCTCTGCAGACAAAGTCAACGGTGAAGGCGGGGAGAGCGTAACAGGCATAATCGACCTTTGCACCATCATCAAAGATTTCATCTCCTTGAAGGCTGGAAGAACACACACAGTTTGTGCTGGCCAAGCAATGTTCTGTTTCTTCCTTATGAGAGCTGAGGAAATCTGGCCAAGCAATGTTCTGTTTCTTCCTTATGAGAGCTGA
Homology
[Close]
BLAST of CmoCh04G015220 vs. TrEMBL
Match: Q0WLM4_ARATH (Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 47/95 (49.47%), Postives = 54/95 (56.84%), Query Frame = 1 

Query: 62  LISSHMVSKDMAPLRNSKTPSSSSPSG-----WKNPTYDFSATTDRGRIFASITVSRSK- 121
           +ISS ++SKD+ PLR S+  SS S S      WKNP    S TT  G  FA  TVSRSK 
Sbjct: 1   MISSQILSKDITPLRKSRLTSSFSSSSFDFSRWKNPMNVLSGTTQMGLTFAWRTVSRSKC 60

Query: 122 --------------FLHSADPSLIKLSSSDLTGIS 137
                         FLHS DPSLI+LS+SDL GIS
Sbjct: 61  LSGNRSRYSSFSHIFLHSDDPSLIRLSNSDLVGIS 95

[Close]
BLAST of CmoCh04G015220 vs. NCBI nr
Match: gi|110740169|dbj|BAF01983.1| (hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 67.8 bits (164), Expect = 3.6e-08
Identity = 47/95 (49.47%), Postives = 54/95 (56.84%), Query Frame = 1 

Query: 62  LISSHMVSKDMAPLRNSKTPSSSSPSG-----WKNPTYDFSATTDRGRIFASITVSRSK- 121
           +ISS ++SKD+ PLR S+  SS S S      WKNP    S TT  G  FA  TVSRSK 
Sbjct: 1   MISSQILSKDITPLRKSRLTSSFSSSSFDFSRWKNPMNVLSGTTQMGLTFAWRTVSRSKC 60

Query: 122 --------------FLHSADPSLIKLSSSDLTGIS 137
                         FLHS DPSLI+LS+SDL GIS
Sbjct: 61  LSGNRSRYSSFSHIFLHSDDPSLIRLSNSDLVGIS 95

The following BLAST results are available for this feature:
BLAST of CmoCh04G015220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015220 vs. TrEMBL
Match NameE-valueIdentityDescription
Q0WLM4_ARATH2.5e-0849.47Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=2 SV=1[more]
BLAST of CmoCh04G015220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|110740169|dbj|BAF01983.1|3.6e-0849.47hypothetical protein [Arabidopsis thaliana][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G015220.1CmoCh04G015220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G015220Melon (DHL92) v3.5.1cmomeB631
CmoCh04G015220Watermelon (Charleston Gray)cmowcgB654
CmoCh04G015220Watermelon (Charleston Gray)cmowcgB681
CmoCh04G015220Watermelon (97103) v1cmowmB662
CmoCh04G015220Watermelon (97103) v1cmowmB693
CmoCh04G015220Cucurbita pepo (Zucchini)cmocpeB651
CmoCh04G015220Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G015220Cucurbita pepo (Zucchini)cmocpeB687
CmoCh04G015220Bottle gourd (USVL1VR-Ls)cmolsiB660
CmoCh04G015220Bottle gourd (USVL1VR-Ls)cmolsiB700
CmoCh04G015220Cucumber (Gy14) v2cgybcmoB650
CmoCh04G015220Melon (DHL92) v3.6.1cmomedB720
CmoCh04G015220Silver-seed gourdcarcmoB1138
CmoCh04G015220Silver-seed gourdcarcmoB1412
CmoCh04G015220Cucumber (Chinese Long) v3cmocucB0874
CmoCh04G015220Watermelon (97103) v2cmowmbB729
CmoCh04G015220Wax gourdcmowgoB0904
CmoCh04G015220Cucurbita moschata (Rifu)cmocmoB336
CmoCh04G015220Cucurbita moschata (Rifu)cmocmoB468
CmoCh04G015220Cucumber (Gy14) v1cgycmoB0793
CmoCh04G015220Cucurbita maxima (Rimu)cmacmoB420
CmoCh04G015220Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G015220Cucurbita maxima (Rimu)cmacmoB739
CmoCh04G015220Wild cucumber (PI 183967)cmocpiB745
CmoCh04G015220Cucumber (Chinese Long) v2cmocuB738