CmoCh04G015110 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G015110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRibonuclease (3.1.26.-)
LocationCmo_Chr04 : 7732704 .. 7734782 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTGAGAACTTCATTTGATTTCCTTCCGATTGTCGAGTTTTTGCATATGAATTTGAAGGATCTATTTCTTTTTCAGTATGCAATCGGTTCGATCTCGGAGCCGATGATTTATGGACGCTTGTACTGCGGGTGTTTCTATTCGAAAGGAAACGCTGAAGAACAGAGAGAGGAACCGGCAATGTTTCTCTGGAGCCAATCCCCAAAGGAGCTTCGAGGCCTTGTAGAATGGATGACTGTCGATGAAGCCGGTCGAGTTCTTGTTTTAGGTTTTGCATTTCTTATTCAAATTTTCGCATCTCTCATTTCGTTTCGATCATCGTATCGAGGCACAAGACCTTGAGAATTTCTTTGTTTTTGATAATTTACCGCATTCGTTCTCAGGACCAGTAGCGTATGGATACTCGGACTGCTGTTGTTCCTATGTCAAAGCACTTCCGTCTTTGAATTTAGCAGGTTTATCTCGTCCACGAAATATGCCCCGTCTGATTCCTTTCTAATCGTTTCTCATATCTCATCATTGTTCGATTCGTTTCTTTTTTGAACTTTTGATGTTTGATTGCAGACTCAAAAACATTGAAAGAATAGAAGACATAGGAATTGTTTGAAAATTTGAAGGCTAACGAATCAATTGGATGGGCTGCTGATGTCAAAGATCCACGCGAGCTCTCGCATCCAAAACGCTAAATAAGTCGGTAGTTCAGAAATTCTTTAATTTTGCCTTCATACACATCCATTTTACTTTTAGAATTTTGACTATGTAGAAGATGGATCGTAGGCCGAATCTTTTCTCTTGAAGAATATTGGTATTAGATCACTCCGAGTTTAAGCTTACACGTTAGGGGAAGTTTACATTTCTTAAATACATTCTTAACATTCATTCCCTCGTGCATTGGTTCAAATATTACACAAAATAGAGAGGAAATAAACATGTTAGGAATTCATTGTTACACATATTAAATCACCAAAAGTATGAGCTTATATGCTAGGATACATAATACTGCCCCCAGCCTCTCTGTTCTTGTTAATATATGTACATCAAAGGGTGACTATGGCTTGAAGCTCTATAGTTTTTCTCCTGTCAAGTCCACGAATTAAGATACTAATTTAATGCATCATATCAAAATTCCCTTTCGAACTCTTTGTTTCTAAAGCTTTTGTCTTCATCAATCAATCAATTGAAGTAGGATAAACCAAAATGATCATGACAGAATCTCTTTTGGCTATTATCCACTTTGAATATCTAGCAAATGTAGAATTTTGTTGCATTTCCAATCAGAAATCATGTAATTGACGCAATTAAAAGGCTACTGTCTCTGTACAATACAACAGTTATCAAACAAAAAAAAGAGTTTATGAGGTTCTGTCTCTGTATATACAATCATTTGCAAGCCACTTATTATGCACTTTTCTTGATCTTAGCAGGAAAGAAAGATCCAACAAGAAAGCTGAAGCACACACCTCAATCAACAGATTTAACAATGTTCTTGTATGGAAGCAGCCTTGATATCAGAAAACTAAATGGAGATGAACAATGGCAGCCAAAACTGAAGCTACCAGAAGCCCCATGTTGTTTTCATAGTGATTTCCTGCATTGCGCGTTCGACCTTGGCGATGATGTGCTTGTGCCGAACCAGCGGCATAAACAGGGATTACGGCCGCACCTCCGCCTCCTGCTTGAGGTCTACCGCCACCACCATTTTCTCCGCCGCCGGCGGCACTTCCATGACCAATCCCTTGAGAAACGGTGATTGCCCTTGCACTGTATATGCTGCTAATCCGGTTAGTGACACCATCCTTGCCATGTTTTTCTGCATTAGTTTTCTGGTGGTAATTTGACTCTGCATACATATAGAAACTGGTTTAGGAATGGGGGTATAATGAATTTCATTTCTTAAAGCTTAACAAATGTGACCCTTTATTTCTTCGTAGGAATTTAGTGGTAAGTTTTCTTTTGGTGACCCTTTATTTCTTCGTGGGAAGTGTGTAGGAATATTCTATTCATGGCATGCACAAGTGAGGCACCAAAAATTCCCACTTTATAAGTTTCTAATCTTGTATTTGATTTAAATCCCAT

mRNA sequence

ATGAGTTTGAGAACTTCATTTGATTTCCTTCCGATTGTCGAGTTTTTGCATATGAATTTGAAGGATCTATTTCTTTTTCAGTATGCAATCGGTTCGATCTCGGAGCCGATGATTTATGGACGCTTGTACTGCGGGTGTTTCTATTCGAAAGGAAACGCTGAAGAACAGAGAGAGGAACCGGCAATGTTTCTCTGGAGCCAATCCCCAAAGGAGCTTCGAGGCCTTGTAGAATGGATGACTGTCGATGAAGCCGGTCGAGTTCTTGTTTTAGGACCAGTAGCGTATGGATACTCGGACTGCTGTTGTTCCTATGTCAAAGCACTTCCGTCTTTGAATTTAGCAGACTCAAAAACATTGAAAGAATAGAAGACATAGGAATTGTTTGAAAATTTGAAGGCTAACGAATCAATTGGATGGGCTGCTGATGTCAAAGATCCACGCGAGCTCTCGCATCCAAAACGCTAAATAACAGGAAAGAAAGATCCAACAAGAAAGCTGAAGCACACACCTCAATCAACAGATTTAACAATGTTCTTGTATGGAAGCAGCCTTGATATCAGAAAACTAAATGGAGATGAACAATGGCAGCCAAAACTGAAGCTACCAGAAGCCCCATGTTGTTTTCATAGTGATTTCCTGCATTGCGCGTTCGACCTTGGCGATGATGTGCTTGTGCCGAACCAGCGGCATAAACAGGGATTACGGCCGCACCTCCGCCTCCTGCTTGAGGTCTACCGCCACCACCATTTTCTCCGCCGCCGGCGGCACTTCCATGACCAATCCCTTGAGAAACGGTGATTGCCCTTGCACTGTATATGCTGCTAATCCGGTTAGTGACACCATCCTTGCCATGTTTTTCTGCATTAGTTTTCTGGTGGTAATTTGACTCTGCATACATATAGAAACTGGTTTAGGAATGGGGGTATAATGAATTTCATTTCTTAAAGCTTAACAAATGTGACCCTTTATTTCTTCGTAGGAATTTAGTGGTAAGTTTTCTTTTGGTGACCCTTTATTTCTTCGTGGGAAGTGTGTAGGAATATTCTATTCATGGCATGCACAAGTGAGGCACCAAAAATTCCCACTTTATAAGTTTCTAATCTTGTATTTGATTTAAATCCCAT

Coding sequence (CDS)

ATGAGTTTGAGAACTTCATTTGATTTCCTTCCGATTGTCGAGTTTTTGCATATGAATTTGAAGGATCTATTTCTTTTTCAGTATGCAATCGGTTCGATCTCGGAGCCGATGATTTATGGACGCTTGTACTGCGGGTGTTTCTATTCGAAAGGAAACGCTGAAGAACAGAGAGAGGAACCGGCAATGTTTCTCTGGAGCCAATCCCCAAAGGAGCTTCGAGGCCTTGTAGAATGGATGACTGTCGATGAAGCCGGTCGAGTTCTTGTTTTAGGACCAGTAGCGTATGGATACTCGGACTGCTGTTGTTCCTATGTCAAAGCACTTCCGTCTTTGAATTTAGCAGACTCAAAAACATTGAAAGAATAG
Homology
[Close]
BLAST of CmoCh04G015110 vs. TrEMBL
Match: A0A068TUI8_COFCA (Ribonuclease OS=Coffea canephora GN=GSCOC_T00029634001 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 34/65 (52.31%), Postives = 39/65 (60.00%), Query Frame = 1 

Query: 57  REEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADS 116
           R E A+  W+  P         M +DEAGR  VLGP+ YG   C CSY KAL +LN ADS
Sbjct: 2   RSEAALPKWASKPC-------MMGIDEAGRGPVLGPMVYGCVYCACSYQKALSTLNFADS 59

Query: 117 KTLKE 122
           KTLKE
Sbjct: 62  KTLKE 59

[Close]
BLAST of CmoCh04G015110 vs. NCBI nr
Match: gi|661896727|emb|CDO99916.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-07
Identity = 34/65 (52.31%), Postives = 39/65 (60.00%), Query Frame = 1 

Query: 57  REEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADS 116
           R E A+  W+  P         M +DEAGR  VLGP+ YG   C CSY KAL +LN ADS
Sbjct: 2   RSEAALPKWASKPC-------MMGIDEAGRGPVLGPMVYGCVYCACSYQKALSTLNFADS 59

Query: 117 KTLKE 122
           KTLKE
Sbjct: 62  KTLKE 59

The following BLAST results are available for this feature:
BLAST of CmoCh04G015110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A068TUI8_COFCA3.4e-0752.31Ribonuclease OS=Coffea canephora GN=GSCOC_T00029634001 PE=3 SV=1[more]
BLAST of CmoCh04G015110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|661896727|emb|CDO99916.1|4.8e-0752.31unnamed protein product [Coffea canephora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G015110.1CmoCh04G015110.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 79..121
score: 7.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G015110CmaCh04G014390Cucurbita maxima (Rimu)cmacmoB728
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G015110Watermelon (97103) v2cmowmbB729
CmoCh04G015110Wax gourdcmowgoB0904
CmoCh04G015110Cucurbita moschata (Rifu)cmocmoB336
CmoCh04G015110Cucurbita moschata (Rifu)cmocmoB468
CmoCh04G015110Cucumber (Gy14) v1cgycmoB0793
CmoCh04G015110Cucurbita maxima (Rimu)cmacmoB420
CmoCh04G015110Cucurbita maxima (Rimu)cmacmoB739
CmoCh04G015110Wild cucumber (PI 183967)cmocpiB745
CmoCh04G015110Cucumber (Chinese Long) v2cmocuB738
CmoCh04G015110Melon (DHL92) v3.5.1cmomeB631
CmoCh04G015110Watermelon (Charleston Gray)cmowcgB654
CmoCh04G015110Watermelon (Charleston Gray)cmowcgB681
CmoCh04G015110Watermelon (97103) v1cmowmB662
CmoCh04G015110Watermelon (97103) v1cmowmB693
CmoCh04G015110Cucurbita pepo (Zucchini)cmocpeB651
CmoCh04G015110Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G015110Cucurbita pepo (Zucchini)cmocpeB687
CmoCh04G015110Bottle gourd (USVL1VR-Ls)cmolsiB660
CmoCh04G015110Bottle gourd (USVL1VR-Ls)cmolsiB700
CmoCh04G015110Cucumber (Gy14) v2cgybcmoB650
CmoCh04G015110Melon (DHL92) v3.6.1cmomedB720
CmoCh04G015110Silver-seed gourdcarcmoB1138
CmoCh04G015110Silver-seed gourdcarcmoB1412
CmoCh04G015110Cucumber (Chinese Long) v3cmocucB0874