CmoCh04G014890 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G014890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcriptional activator DEMETER
Location	Cmo_Chr04 : 7631622 .. 7633067 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATTGATAAAATGGAGATGGTTAGGATTTAGATTCAGTTTGGGTAGAGTTATAGAAAAGAACTAAGGCTCGCCTGACCACAGCTCATCTCATAATAGTAATTTCCTCAGCCTGGTCCCCATTAAATTTACTTTCAATTTATCATCCTTATCATGATTCCAAAGAACTCTGAAATGTTTCTTTATCTGAGCTCTTTCACCATCTCATCAAGGATAATACCCCCAAGCTTATACAGCCAAATGTTGTATTTAAGAGTTTGAAACTTTACCTATTTAATATAGATTTTTGAAGGACTTCCGCAAACCAAACCAATCACTGAGTTTTTTTATATGCCTTCATAACATGGTCTCTCTACATGCTCATGAGGTGTATGTTAGTATTTAGAAGAAACATACAAAGGAATTCGTACCCAATGTGAGAAGATGATCACCTTGATAATTGGTATTCATTCCCTGATATATACCAAGCATCTGATCATCCGTAGCTGTGGGAGAAAAAATCCAAGTGATCAGAAAAACATGAGTGAACAAAATCTTCTAGCTTATGGGATTTAGTGTCCTATATAAACAACATACAGATATCCCAAGGAAAATATGGTATAATAGTAATAGACAGTAATCATTCACAGCGATGGCATAATAGTAATAGACAGTATGCAAGAACAATCAAAGATGATTATGACTAGATTAGGGTACATTAAATATCTAATTTTCCTAATTTGCATTTAAGTAGAATCTTATCTTAGTATGTTGTGGTTGTGTAACACTATCAAAGATGATTGAGCCTCAAATTATATTCCCATTTGTGTGTCTGTGCAAAAGCTAAATTTTGAGTAATGTTGCAGGCTTTGTTTGTGTCAGAGGATTTGATCAGAAAACCCGGGCACCACGACCTCTGATTGCTAGATTGCACTTTCCAGCAAGCAAGCTAGCCAAGGTGAAAAATGGACATACAGAATAGCGAACTTATATGCAGAAGGCAGAAGGTAAGAGCAAGAGCAACAGAAAGGATTACTGACTGCTAAAGAAGATTTTCGACTAACCTATTGTTCTAGATTTTTAATTATTCTTGGTCTAACGTGCAATGCAATCACTGCATGTTCGCCAAGCGGGAAAGGAAAAAGTTACCAAATTGAAATTTTAGAATCCATAAGTGAGATGTAGTCTCTGCCCTACTGATATTCTTATGATTATTCTCAATTCATGCTCGAAACAGAGCCGATTCTTCAAATGTTGCCTGCGTCTAATTTCTCTTTTAGTAAGTTCTAACTTTTTTGTGCTTAATGCTCGAAACAGAGCCGATTCTTCAAATGTTGCCTGCGTCTAATTTCTCTTTTAGTAAGTTCTAACTTTTTTGTGCTTACTCAGTATATGAATGGTGAAAAGTTGAAAATTGCATCTGTTACAGAGAAAAATGAATGCCAGATCAATATAAGTCAGTGA

mRNA sequence

ATGGCTATTGATAAAATGGAGATGAAAAGAACTAAGGCTCGCCTGACCACAGCTCATCTCATAATAGACTTCCGCAAACCAAACCAATCACTGAGTTTTTTTATATGCCTTCATAACATGGTCTCTCTACATGCTCATGAGTATTTAGAAGAAACATACAAAGGAATTCGTACCCAATGTGAGAAGATGATCACCTTGATAATTGGCTTTGTTTGTGTCAGAGGATTTGATCAGAAAACCCGGGCACCACGACCTCTGATTGCTAGATTGCACTTTCCAGCAAGCAAGCTAGCCAAGTATATGAATGGTGAAAAGTTGAAAATTGCATCTGTTACAGAGAAAAATGAATGCCAGATCAATATAAGTCAGTGA

Coding sequence (CDS)

ATGGCTATTGATAAAATGGAGATGAAAAGAACTAAGGCTCGCCTGACCACAGCTCATCTCATAATAGACTTCCGCAAACCAAACCAATCACTGAGTTTTTTTATATGCCTTCATAACATGGTCTCTCTACATGCTCATGAGTATTTAGAAGAAACATACAAAGGAATTCGTACCCAATGTGAGAAGATGATCACCTTGATAATTGGCTTTGTTTGTGTCAGAGGATTTGATCAGAAAACCCGGGCACCACGACCTCTGATTGCTAGATTGCACTTTCCAGCAAGCAAGCTAGCCAAGTATATGAATGGTGAAAAGTTGAAAATTGCATCTGTTACAGAGAAAAATGAATGCCAGATCAATATAAGTCAGTGA

Homology

[Close]

BLAST of CmoCh04G014890 vs. Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-09
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1


Query: 69   GFVCVRGFDQKTRAPRPLIARLHFPASKL 98
            GFVCVRGF+QKTRAPRPL+ARLHFPASKL
Sbjct: 1954 GFVCVRGFEQKTRAPRPLMARLHFPASKL 1982

[Close]

BLAST of CmoCh04G014890 vs. Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-08
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1


Query: 69   GFVCVRGFDQKTRAPRPLIARLHFPASKL 98
            G+VCVRGFD+KTR P+PLIARLHFPASKL
Sbjct: 1357 GYVCVRGFDRKTRGPKPLIARLHFPASKL 1385

[Close]

BLAST of CmoCh04G014890 vs. TrEMBL
Match: A0A0A0KTG6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615310 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-10
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1


Query: 69   GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGE 105
            GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG+
Sbjct: 1807 GFVCVRGFDQKTRAPRPLIARLHFPASKLAKVKNGQ 1842

[Close]

BLAST of CmoCh04G014890 vs. TrEMBL
Match: A0A061FPP2_THECC (DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 3 OS=Theobroma cacao GN=TCM_043681 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.6e-10
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 53   YKGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEK 106
            +KG+ T+ E       GFVCVRGFDQKTRAPRPL+ARLHFPASKLAK  N  K
Sbjct: 1927 FKGLSTE-EIQYCFWKGFVCVRGFDQKTRAPRPLMARLHFPASKLAKTQNKSK 1978

[Close]

BLAST of CmoCh04G014890 vs. TrEMBL
Match: A0A061FQU9_THECC (DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 OS=Theobroma cacao GN=TCM_043681 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.6e-10
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 53   YKGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEK 106
            +KG+ T+ E       GFVCVRGFDQKTRAPRPL+ARLHFPASKLAK  N  K
Sbjct: 1926 FKGLSTE-EIQYCFWKGFVCVRGFDQKTRAPRPLMARLHFPASKLAKTQNKSK 1977

[Close]

BLAST of CmoCh04G014890 vs. TrEMBL
Match: A0A061FW36_THECC (DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 2 OS=Theobroma cacao GN=TCM_043681 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.6e-10
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 47   EYLEETY-KGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEK 106
            E+L + + KG+ T+ E       GFVCVRGFDQKTRAPRPL+ARLHFPASKLAK  N  K
Sbjct: 1940 EHLYQQFSKGLSTE-EIQYCFWKGFVCVRGFDQKTRAPRPLMARLHFPASKLAKTQNKSK 1998

[Close]

BLAST of CmoCh04G014890 vs. TrEMBL
Match: A0A0U2GMU1_LONJA (DNA demethylase OS=Lonicera japonica GN=DME1 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1


Query: 69   GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEKLKIASVTEKNEC 118
            GFVCVRGFD KTRAP+PL+ARLHFPASKL K  N EK KIA  +    C
Sbjct: 1678 GFVCVRGFDLKTRAPKPLMARLHFPASKLVKTKNEEKQKIALDSRTANC 1726

[Close]

BLAST of CmoCh04G014890 vs. TAIR10
Match: AT5G04560.2 (AT5G04560.2 HhH-GPD base excision DNA repair family protein)

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-10
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1


Query: 69   GFVCVRGFDQKTRAPRPLIARLHFPASKL 98
            GFVCVRGF+QKTRAPRPL+ARLHFPASKL
Sbjct: 1954 GFVCVRGFEQKTRAPRPLMARLHFPASKL 1982

[Close]

BLAST of CmoCh04G014890 vs. TAIR10
Match: AT2G36490.1 (AT2G36490.1 demeter-like 1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1


Query: 69   GFVCVRGFDQKTRAPRPLIARLHFPASKL 98
            G+VCVRGFD+KTR P+PLIARLHFPASKL
Sbjct: 1357 GYVCVRGFDRKTRGPKPLIARLHFPASKL 1385

[Close]

BLAST of CmoCh04G014890 vs. NCBI nr
Match: gi|778706391|ref|XP_011655842.1| (PREDICTED: transcriptional activator DEMETER isoform X1 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1


Query: 69   GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGE 105
            GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG+
Sbjct: 1807 GFVCVRGFDQKTRAPRPLIARLHFPASKLAKVKNGQ 1842

[Close]

BLAST of CmoCh04G014890 vs. NCBI nr
Match: gi|659091878|ref|XP_008446781.1| (PREDICTED: transcriptional activator DEMETER isoform X1 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1


Query: 69   GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGE 105
            GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG+
Sbjct: 1807 GFVCVRGFDQKTRAPRPLIARLHFPASKLAKVKNGQ 1842

[Close]

BLAST of CmoCh04G014890 vs. NCBI nr
Match: gi|590566426|ref|XP_007010230.1| (DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 3 [Theobroma cacao])

HSP 1 Score: 72.0 bits (175), Expect = 8.1e-10
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 53   YKGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEK 106
            +KG+ T+ E       GFVCVRGFDQKTRAPRPL+ARLHFPASKLAK  N  K
Sbjct: 1927 FKGLSTE-EIQYCFWKGFVCVRGFDQKTRAPRPLMARLHFPASKLAKTQNKSK 1978

[Close]

BLAST of CmoCh04G014890 vs. NCBI nr
Match: gi|590566433|ref|XP_007010232.1| (DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 [Theobroma cacao])

HSP 1 Score: 72.0 bits (175), Expect = 8.1e-10
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 53   YKGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEK 106
            +KG+ T+ E       GFVCVRGFDQKTRAPRPL+ARLHFPASKLAK  N  K
Sbjct: 1926 FKGLSTE-EIQYCFWKGFVCVRGFDQKTRAPRPLMARLHFPASKLAKTQNKSK 1977

[Close]

BLAST of CmoCh04G014890 vs. NCBI nr
Match: gi|590566423|ref|XP_007010229.1| (DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 47   EYLEETY-KGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEK 106
            E+L + + KG+ T+ E       GFVCVRGFDQKTRAPRPL+ARLHFPASKLAK  N  K
Sbjct: 1940 EHLYQQFSKGLSTE-EIQYCFWKGFVCVRGFDQKTRAPRPLMARLHFPASKLAKTQNKSK 1998

The following BLAST results are available for this feature:

BLAST of CmoCh04G014890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DME_ARATH	5.2e-09	93.10	Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2	[more]
ROS1_ARATH	3.4e-08	86.21	Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2	[more]

BLAST of CmoCh04G014890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTG6_CUCSA	2.5e-10	91.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615310 PE=4 SV=1	[more]
A0A061FPP2_THECC	5.6e-10	67.92	DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 3 ...	[more]
A0A061FQU9_THECC	5.6e-10	67.92	DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 ...	[more]
A0A061FW36_THECC	9.6e-10	63.33	DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 2 ...	[more]
A0A0U2GMU1_LONJA	1.6e-09	69.39	DNA demethylase OS=Lonicera japonica GN=DME1 PE=2 SV=1	[more]

BLAST of CmoCh04G014890 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04560.2	3.0e-10	93.10	HhH-GPD base excision DNA repair family protein	[more]
AT2G36490.1	1.9e-09	86.21	demeter-like 1	[more]

BLAST of CmoCh04G014890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778706391\|ref\|XP_011655842.1\|	3.6e-10	91.67	PREDICTED: transcriptional activator DEMETER isoform X1 [Cucumis sativus]	[more]
gi\|659091878\|ref\|XP_008446781.1\|	3.6e-10	91.67	PREDICTED: transcriptional activator DEMETER isoform X1 [Cucumis melo]	[more]
gi\|590566426\|ref\|XP_007010230.1\|	8.1e-10	67.92	DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 3 ...	[more]
gi\|590566433\|ref\|XP_007010232.1\|	8.1e-10	67.92	DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 ...	[more]
gi\|590566423\|ref\|XP_007010229.1\|	1.4e-09	63.33	DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 2 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0040029	regulation of gene expression, epigenetic
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016829	lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G014890.1	CmoCh04G014890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10359	A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III	coord: 69..108 score: 1.7
None	No IPR available	PANTHER	PTHR10359:SF28	TRANSCRIPTIONAL ACTIVATOR DEMETER	coord: 69..108 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G014890	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G014890	Silver-seed gourd	carcmoB0939
CmoCh04G014890	Silver-seed gourd	carcmoB1138
CmoCh04G014890	Cucumber (Chinese Long) v3	cmocucB0874
CmoCh04G014890	Watermelon (97103) v2	cmowmbB729
CmoCh04G014890	Wax gourd	cmowgoB0869
CmoCh04G014890	Wax gourd	cmowgoB0904
CmoCh04G014890	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G014890	Cucurbita moschata (Rifu)	cmocmoB468
CmoCh04G014890	Cucumber (Gy14) v1	cgycmoB0848
CmoCh04G014890	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G014890	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G014890	Cucurbita maxima (Rimu)	cmacmoB739
CmoCh04G014890	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G014890	Cucumber (Chinese Long) v2	cmocuB738
CmoCh04G014890	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G014890	Watermelon (Charleston Gray)	cmowcgB654
CmoCh04G014890	Watermelon (Charleston Gray)	cmowcgB681
CmoCh04G014890	Watermelon (97103) v1	cmowmB662
CmoCh04G014890	Watermelon (97103) v1	cmowmB693
CmoCh04G014890	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G014890	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G014890	Cucurbita pepo (Zucchini)	cmocpeB687
CmoCh04G014890	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G014890	Bottle gourd (USVL1VR-Ls)	cmolsiB700
CmoCh04G014890	Cucumber (Gy14) v2	cgybcmoB650