CmoCh04G014700 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G014700
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 7520812 .. 7521345 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACCACCGGGACTATCGGTTTGGTGCTCTTGGTTTTGTTAATGGCGGACTTAACTCTTGCTGCTAGATTCCTAAGGGGGTACGGAGGTGGTGGTGGGGGTGGTAGTGGTGGGGGTGGAGGTGGCGGAGAAGGTTCAAGACCTTGGTCAGGTTCGGGATATGGTTCGGGGTATGGCTCTGGGTATGGTTCGGGATATGGCGATGGTGGCTATCCTAGATATGGAGATGAAGGGTATGGGCCATATGGGCCATATGGGAGTGGTGGAGGTGGAGGGGGAGGAGGTGGTGGTGGGGGAGGAGGCGGCGGTGCAAATGGAGCCGGGTATGGTCACGGGTTTGGATCGGGAAGTGGGTCAGGGTATGGGTCTGGTGGCGGAGTAGGACGTGGCGGAGGAGGTGGTGGAGGAGGTGGCAGAGGTGGAGGAGGAGGAGGTGGCGGCGGAGGAGGCGGCGGGGGCGGAGAAGGAATGGGAGGAGGGTCCGGATATGGTTCGGGATATGGGTCGGGATATGGAGGAGGCGGGGATTAA

mRNA sequence

ATGGCTACCACCGGGACTATCGGTTTGGTGCTCTTGGTTTTGTTAATGGCGGACTTAACTCTTGCTGCTAGATTCCTAAGGGGGTACGGAGGTGGTGGTGGGGGTGGTAGTGGTGGGGGTGGAGGTGGCGGAGAAGGTTCAAGACCTTGGTCAGGTTCGGGATATGGTTCGGGGTATGGCTCTGGGTATGGTTCGGGATATGGCGATGGTGGCTATCCTAGATATGGAGATGAAGGGTATGGGCCATATGGGCCATATGGGAGTGGTGGAGGTGGAGGGGGAGGAGGTGGTGGTGGGGGAGGAGGCGGCGGTGCAAATGGAGCCGGGTATGGTCACGGGTTTGGATCGGGAAGTGGGTCAGGGTATGGGTCTGGTGGCGGAGTAGGACGTGGCGGAGGAGGTGGTGGAGGAGGTGGCAGAGGTGGAGGAGGAGGAGGTGGCGGCGGAGGAGGCGGCGGGGGCGGAGAAGGAATGGGAGGAGGGTCCGGATATGGTTCGGGATATGGGTCGGGATATGGAGGAGGCGGGGATTAA

Coding sequence (CDS)

ATGGCTACCACCGGGACTATCGGTTTGGTGCTCTTGGTTTTGTTAATGGCGGACTTAACTCTTGCTGCTAGATTCCTAAGGGGGTACGGAGGTGGTGGTGGGGGTGGTAGTGGTGGGGGTGGAGGTGGCGGAGAAGGTTCAAGACCTTGGTCAGGTTCGGGATATGGTTCGGGGTATGGCTCTGGGTATGGTTCGGGATATGGCGATGGTGGCTATCCTAGATATGGAGATGAAGGGTATGGGCCATATGGGCCATATGGGAGTGGTGGAGGTGGAGGGGGAGGAGGTGGTGGTGGGGGAGGAGGCGGCGGTGCAAATGGAGCCGGGTATGGTCACGGGTTTGGATCGGGAAGTGGGTCAGGGTATGGGTCTGGTGGCGGAGTAGGACGTGGCGGAGGAGGTGGTGGAGGAGGTGGCAGAGGTGGAGGAGGAGGAGGTGGCGGCGGAGGAGGCGGCGGGGGCGGAGAAGGAATGGGAGGAGGGTCCGGATATGGTTCGGGATATGGGTCGGGATATGGAGGAGGCGGGGATTAA
BLAST of CmoCh04G014700 vs. TrEMBL
Match: A0A0A0KUV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622440 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-27
Identity = 151/202 (74.75%), Postives = 154/202 (76.24%), Query Frame = 1

Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MATT   GLV+LVLLM DL LAARF RGYGGG    SGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1   MATTKAAGLVILVLLMLDLALAARFFRGYGGG----SGGGGGGGEGSGPWSGSGYGSGYG 60

Query: 61  SGYGSGYG-DGGYPRYGDEG-YGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGS 120
           SGYGSGYG + GY RYGDEG YGPYGPY SGGGGGGGGGGGGGGG A GA YG GFG+GS
Sbjct: 61  SGYGSGYGGEEGYSRYGDEGRYGPYGPY-SGGGGGGGGGGGGGGGSAIGAEYGRGFGAGS 120

Query: 121 GSGYGSGGGVGRGGGGGGGGGRGGGGGGG-----------------------GGGGGGGG 178
           GSGYGSGGGVGRGGGGGGG G GGGGG G                       GGGGGGGG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGG 180

BLAST of CmoCh04G014700 vs. TrEMBL
Match: A0A067L9H4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01572 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.6e-08
Identity = 118/179 (65.92%), Postives = 127/179 (70.95%), Query Frame = 1

Query: 1   MATTGTIGLVLLVLLMADLTLAARFLR---GYGGGGGGGSGGGGGGGEGSRPWSGSGYGS 60
           MA++  +G  LLVLL+ D+  AAR L+   G GGGGGGG GGGGGGG G     GSGYG 
Sbjct: 1   MASSRLLGATLLVLLLVDVCFAARSLKVFIGRGGGGGGGGGGGGGGGGGGSGGLGSGYGE 60

Query: 61  GYGSGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSG 120
           GYGSG G GYG GG      EGYG    YG GGGGGGGGGGG GG   +G+GYG GFGSG
Sbjct: 61  GYGSGGGEGYGSGG-----GEGYGGIEGYGGGGGGGGGGGGGSGGASGSGSGYGSGFGSG 120

Query: 121 SGSGYGSGGGVGRGGGGGGGGGRGGGGGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGG 177
           SGSGYGSG   G+GGGGGGGGGRGGGGGGGGG G G G G G G G GSGYGSG G GG
Sbjct: 121 SGSGYGSGS--GKGGGGGGGGGRGGGGGGGGGLGHGSGSGYGSGYGSGSGYGSGGGRGG 172

BLAST of CmoCh04G014700 vs. TrEMBL
Match: U5G1M4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s03090g PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 115/175 (65.71%), Postives = 120/175 (68.57%), Query Frame = 1

Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MA+   +G   LVLL+ADLT AAR L+  GGGGGGG GGGGGGG      SGSG GSGYG
Sbjct: 1   MASPRLLGTAFLVLLVADLTFAARTLQATGGGGGGGQGGGGGGG------SGSGLGSGYG 60

Query: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS 120
           SG  SGYG G       EGYG  G  G GGGGGGGGGGGGGGGG+       G GSGSGS
Sbjct: 61  SG--SGYGSG-------EGYGAGGRGGGGGGGGGGGGGGGGGGGS-------GSGSGSGS 120

Query: 121 GYGSGGGVGRGGGGGGGGGRGGGGGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGG 176
           G GSG G G GGGGG     GGGGGGGGGGGGG G G G GSG GSGYGSGYGGG
Sbjct: 121 GSGSGSGSGNGGGGG-----GGGGGGGGGGGGGSGSGSGSGSGSGSGYGSGYGGG 148

BLAST of CmoCh04G014700 vs. TrEMBL
Match: U5G589_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s23700g PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 109/175 (62.29%), Postives = 119/175 (68.00%), Query Frame = 1

Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MA++  IG   L+L + DLT AAR  +  G GGGGG GGGGG G G    SG G GSG+G
Sbjct: 1   MASSRVIGAAFLILFILDLTFAARSPKAIGKGGGGGGGGGGGRGGGGGSASGLGSGSGHG 60

Query: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS 120
           SGYGSG         G EGYG  G  G G GGGGGGGGGGGGG  +G+GYG G+GSGSGS
Sbjct: 61  SGYGSG---------GGEGYG--GGLGGGWGGGGGGGGGGGGGMGSGSGYGSGYGSGSGS 120

Query: 121 GYGSGGGVGRGGGGGGGGGRGGGGGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGG 176
           GYGSG GVG GGGGGGG G        GGGGGGGG G+G GSGYGSG GSGYG G
Sbjct: 121 GYGSGSGVGGGGGGGGGSG--------GGGGGGGGTGLGSGSGYGSGGGSGYGSG 156

BLAST of CmoCh04G014700 vs. TrEMBL
Match: A0A061FQB6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_043372 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-06
Identity = 117/180 (65.00%), Postives = 122/180 (67.78%), Query Frame = 1

Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYG---GGGGGGSGGGGGGGEGSRPWSGSGYGS 60
           M ++  IG   LVLL  DL  AAR L+  G   GGGGGG G GGGGG GS   SGSGYGS
Sbjct: 1   MTSSRVIGAAFLVLLFVDLAFAARSLKAVGKGGGGGGGGGGSGGGGGGGSGLGSGSGYGS 60

Query: 61  GYGSGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGG-GGGGGGANGAGYGHGFGS 120
           GYGSG GSGYG G               YGSGGGGGGGGGG GGGGG  +G+GYG G GS
Sbjct: 61  GYGSGSGSGYGSGA--------------YGSGGGGGGGGGGEGGGGGSGSGSGYGSGSGS 120

Query: 121 GSGSGYGSGGGVGRGGGGGGGGGRGGGGGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGG 177
           G GSGYGSG G   G GGGGGGGRGGGGGGGGG G GGG G G GSG GSGYGSG G GG
Sbjct: 121 GYGSGYGSGSGT--GSGGGGGGGRGGGGGGGGGSGSGGGSGYGSGSGSGSGYGSGGGRGG 164

BLAST of CmoCh04G014700 vs. NCBI nr
Match: gi|700197050|gb|KGN52227.1| (hypothetical protein Csa_5G622440 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 2.8e-27
Identity = 151/202 (74.75%), Postives = 154/202 (76.24%), Query Frame = 1

Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MATT   GLV+LVLLM DL LAARF RGYGGG    SGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1   MATTKAAGLVILVLLMLDLALAARFFRGYGGG----SGGGGGGGEGSGPWSGSGYGSGYG 60

Query: 61  SGYGSGYG-DGGYPRYGDEG-YGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGS 120
           SGYGSGYG + GY RYGDEG YGPYGPY SGGGGGGGGGGGGGGG A GA YG GFG+GS
Sbjct: 61  SGYGSGYGGEEGYSRYGDEGRYGPYGPY-SGGGGGGGGGGGGGGGSAIGAEYGRGFGAGS 120

Query: 121 GSGYGSGGGVGRGGGGGGGGGRGGGGGGG-----------------------GGGGGGGG 178
           GSGYGSGGGVGRGGGGGGG G GGGGG G                       GGGGGGGG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGG 180

BLAST of CmoCh04G014700 vs. NCBI nr
Match: gi|778708700|ref|XP_011656265.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 4.0e-26
Identity = 148/191 (77.49%), Postives = 151/191 (79.06%), Query Frame = 1

Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MATT   GLV+LVLLM DL LAARF RGYGGG    SGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1   MATTKAAGLVILVLLMLDLALAARFFRGYGGG----SGGGGGGGEGSGPWSGSGYGSGYG 60

Query: 61  SGYGSGYG-DGGYPRYGDEG-YGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGS 120
           SGYGSGYG + GY RYGDEG YGPYGPY SGGGGGGGGGGGGGGG A GA YG GFG+GS
Sbjct: 61  SGYGSGYGGEEGYSRYGDEGRYGPYGPY-SGGGGGGGGGGGGGGGSAIGAEYGRGFGAGS 120

Query: 121 GSGYGSGGGVGRGGGGGGGGGRGGGGGG------------GGGGGGGGGEGMGGGSGYGS 178
           GSGYGSGGGVGRGGGGGGG G GGGGG             G GGG G G G GGGSGYGS
Sbjct: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGGGGGSGYGS 180

BLAST of CmoCh04G014700 vs. NCBI nr
Match: gi|659092334|ref|XP_008447018.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 150/213 (70.42%), Postives = 153/213 (71.83%), Query Frame = 1

Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSR-PWSGSGYGSGY 60
           MATT  +G V+LVLLM DL LAARF RGYGGGGGGGSGGGGGGGEGS  PW GSGYGSGY
Sbjct: 1   MATTKAVGFVVLVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGGPWPGSGYGSGY 60

Query: 61  GSGYGSGYG-DGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGG--ANGAGYGHGFGS 120
           GSGYGSGYG + GY RYGDEGYGPYG Y    GGGGGGGGGGGGGG  A GA YG GFG 
Sbjct: 61  GSGYGSGYGGEEGYSRYGDEGYGPYGRYS---GGGGGGGGGGGGGGGSAIGAEYGRGFGM 120

Query: 121 GSGSGYGSGGGVGRGGGGGGGGGRGGGGGG------------------------------ 178
           G GSGYGSGGGVGRGGGGGGG G GGGGG                               
Sbjct: 121 GGGSGYGSGGGVGRGGGGGGGSGGGGGGGSGVGSGSGYGSGYGSGGGYGSGGGRGGGGGV 180

BLAST of CmoCh04G014700 vs. NCBI nr
Match: gi|802547508|ref|XP_012090469.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Jatropha curcas])

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 118/181 (65.19%), Postives = 127/181 (70.17%), Query Frame = 1

Query: 1   MATTGTIGLVLLVLLMADLTLAARFLR---GYGGGGGGGSGGGGGGGEGSRPWSGSGYGS 60
           MA++  +G  LLVLL+ D+  AAR L+   G GGGGGGG GGGGGGG G     GSGYG 
Sbjct: 1   MASSRLLGATLLVLLLVDVCFAARSLKVFIGRGGGGGGGGGGGGGGGGGGSGGLGSGYGE 60

Query: 61  GYGSGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSG 120
           GYGSG G GYG GG      EGYG    YG GGGGGGGGGGG GG   +G+GYG GFGSG
Sbjct: 61  GYGSGGGEGYGSGG-----GEGYGGIEGYGGGGGGGGGGGGGSGGASGSGSGYGSGFGSG 120

Query: 121 SGSGYGSGGGVGRGGGGGGGGGRGGGGGGGGGGGGGGGEGMGGGSGYGSGY--GSGYGGG 177
           SGSGYGSG G  +GGGGGGGGGRGGGGGGGGG       G G GSGYGSGY  GSGYG G
Sbjct: 121 SGSGYGSGSG--KGGGGGGGGGRGGGGGGGGG------LGHGSGSGYGSGYGSGSGYGSG 168

BLAST of CmoCh04G014700 vs. NCBI nr
Match: gi|1012241822|ref|XP_015941100.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Arachis duranensis])

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 117/182 (64.29%), Postives = 129/182 (70.88%), Query Frame = 1

Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGY-----GGGGGGGSGGGGGGGEGSRPWSGSGY 60
           MA++  IG +L+ LL+ +++ AAR   G      GGGGGGG+GGGGGG  GS   SG G 
Sbjct: 1   MASSKFIGAILIALLLVEVSFAARVRNGLLGARGGGGGGGGAGGGGGGARGSGYGSGYGS 60

Query: 61  GSGYGSGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFG 120
           G GYGSGYGSGYG G        G G  G  G GGGGGG GGGGGGGGG+NG+GYG G+G
Sbjct: 61  GGGYGSGYGSGYGSG-------YGSGSGGRGGGGGGGGGRGGGGGGGGGSNGSGYGSGYG 120

Query: 121 SGSGSGYGSGGGVGRGGGGGGGGGRGGGGGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGG 178
           SG GSGYGSGG  GRGGGGGG    GGGGG GGGGG  GG G G GSGYGSGYGSGYGGG
Sbjct: 121 SGEGSGYGSGG--GRGGGGGG----GGGGGSGGGGGRYGGSGYGSGSGYGSGYGSGYGGG 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KUV7_CUCSA1.9e-2774.75Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622440 PE=4 SV=1[more]
A0A067L9H4_JATCU7.6e-0865.92Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01572 PE=4 SV=1[more]
U5G1M4_POPTR1.1e-0665.71Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s03090g PE=4 SV=1[more]
U5G589_POPTR2.4e-0662.29Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s23700g PE=4 SV=1[more]
A0A061FQB6_THECC4.2e-0665.00Uncharacterized protein OS=Theobroma cacao GN=TCM_043372 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700197050|gb|KGN52227.1|2.8e-2774.75hypothetical protein Csa_5G622440 [Cucumis sativus][more]
gi|778708700|ref|XP_011656265.1|4.0e-2677.49PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus][more]
gi|659092334|ref|XP_008447018.1|1.5e-2570.42PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo][more]
gi|802547508|ref|XP_012090469.1|1.5e-0965.19PREDICTED: glycine-rich cell wall structural protein 2-like [Jatropha curcas][more]
gi|1012241822|ref|XP_015941100.1|1.7e-0864.29PREDICTED: putative glycine-rich cell wall structural protein 1 [Arachis duranen... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G014700.1CmoCh04G014700.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 144..162
score: 1.3E-9coord: 91..106
score: 1.3E-9coord: 117..127
score: 1.3E-9coord: 31..42
score: 1.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None