CmoCh04G014190 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G014190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 7227970 .. 7228613 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTAGTTAGCAATCACACAGCTTTAGGCACTATAAAATGGGATGAGTATGGGCAACACTGAGTAACTCATCCTAAAAGCCTTCTTCACCAAAATTCTCTCCTCTTGCAATGAAGACTGTTTCCATGCTCCTCTGCTTCCTTTTGCTTGCCAACCTCTGCTATGCAGCAGAGCAAGAAATGGGTAAGTTGGAGGCCGCCCAAGGTACCTTCACCAACCTTTTAGGCTCATTTTGGGTCATTTTCAGGCTAAAAAATGCTTGTTGTTTTGATCATGTCTGTCTTCATTTTATGCAGGCACCAAAGGAGAAGAAGGGGAAGAGACCGAAGCAGAGAAATTGAAGCTTATTCCACACCACATACCATTCTACAAGAAGCCGCTTTTGAAGGCAGCTCCAAAGAAGCCAATTCCGCATCACCCAATCCTCAAGAAGCCATTTCCAAAGCCTCGTTATCCGCCAGTGTTCCCCACCCATCCTTGAAACAAACTATGCTCATGAGCCCTTATAATGCCATGGAATAATAAGCTTTACTGCATAGTTAAGTTTTAGAAACCATGAGTTTATTTTGGAGTCAGCTTCCTTTGCTACTACTACTCTTCACTGTTCTTGTTCTTGTTGTGTTCAATCAAATAATAAACTATCG

mRNA sequence

ATTTTAGTTAGCAATCACACAGCTTTAGGCACTATAAAATGGGATGAGTATGGGCAACACTGAGTAACTCATCCTAAAAGCCTTCTTCACCAAAATTCTCTCCTCTTGCAATGAAGACTGTTTCCATGCTCCTCTGCTTCCTTTTGCTTGCCAACCTCTGCTATGCAGCAGAGCAAGAAATGGGTAAGTTGGAGGCCGCCCAAGGCACCAAAGGAGAAGAAGGGGAAGAGACCGAAGCAGAGAAATTGAAGCTTATTCCACACCACATACCATTCTACAAGAAGCCGCTTTTGAAGGCAGCTCCAAAGAAGCCAATTCCGCATCACCCAATCCTCAAGAAGCCATTTCCAAAGCCTCGTTATCCGCCAGTGTTCCCCACCCATCCTTGAAACAAACTATGCTCATGAGCCCTTATAATGCCATGGAATAATAAGCTTTACTGCATAGTTAAGTTTTAGAAACCATGAGTTTATTTTGGAGTCAGCTTCCTTTGCTACTACTACTCTTCACTGTTCTTGTTCTTGTTGTGTTCAATCAAATAATAAACTATCG

Coding sequence (CDS)

ATGAAGACTGTTTCCATGCTCCTCTGCTTCCTTTTGCTTGCCAACCTCTGCTATGCAGCAGAGCAAGAAATGGGTAAGTTGGAGGCCGCCCAAGGCACCAAAGGAGAAGAAGGGGAAGAGACCGAAGCAGAGAAATTGAAGCTTATTCCACACCACATACCATTCTACAAGAAGCCGCTTTTGAAGGCAGCTCCAAAGAAGCCAATTCCGCATCACCCAATCCTCAAGAAGCCATTTCCAAAGCCTCGTTATCCGCCAGTGTTCCCCACCCATCCTTGA

Homology

[Close]

BLAST of CmoCh04G014190 vs. TrEMBL
Match: A0A0A0KRM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-11
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 4  VSMLLCFLLLANLCYAAEQEMGKLEAAQGTK-GEEGEETEAEKLKLIPHHIPFYKKPLLK 63
          +++ L   LL N CYAAE+       AQG    + GEE + EK K +P HIPFYKKP+ K
Sbjct: 1  MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK 60

Query: 64 AAPKKPIPHHPILKKPFPKPRYPPVFPTHP 93
                IP  PI+KKPFPKP  PPV P+HP
Sbjct: 61 T-----IPRQPIIKKPFPKPYRPPVLPSHP 85

[Close]

BLAST of CmoCh04G014190 vs. TrEMBL
Match: E5GCK5_CUCME (Annexin OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 51/121 (42.15%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGTKG---EEGEETEAEKLKLIPHHIPFYKKPL 63
           + +LL FLLL N CYAAE+ + + +  +G  G   + GEE + EK K + HH P+YKKP 
Sbjct: 386 LGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHKPYYKKPF 445

Query: 64  LKAAP----------------KKPIPHHPILKKP-------------FPKPRYPPVFPTH 93
           LK  P                KKPIP HP LKKP             F KP +PPVF TH
Sbjct: 446 LKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPIHPPVFHTH 505

[Close]

BLAST of CmoCh04G014190 vs. TrEMBL
Match: A0A0A0KWW0_CUCSA (ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-09
Identity = 51/112 (45.54%), Postives = 63/112 (56.25%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGTKG---EEGEETEAEKLKLIPHHIPFYKKPL 63
           + +LL FLLL N CYAAE+ + + ++ +G  G   + GEE E EK K + HH P+YKKP 
Sbjct: 8   LGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEE-EDEKFKFLLHHKPYYKKPF 67

Query: 64  LKAAP------KKPIPHHPILKKP-------------FPKP-RYPPVFPTHP 93
           LK  P      KKPIP HP  KKP             F KP  +PPVF THP
Sbjct: 68  LKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP 118

[Close]

BLAST of CmoCh04G014190 vs. NCBI nr
Match: gi|700197123|gb|KGN52300.1| (hypothetical protein Csa_5G623640 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 4  VSMLLCFLLLANLCYAAEQEMGKLEAAQGTK-GEEGEETEAEKLKLIPHHIPFYKKPLLK 63
          +++ L   LL N CYAAE+       AQG    + GEE + EK K +P HIPFYKKP+ K
Sbjct: 1  MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK 60

Query: 64 AAPKKPIPHHPILKKPFPKPRYPPVFPTHP 93
                IP  PI+KKPFPKP  PPV P+HP
Sbjct: 61 T-----IPRQPIIKKPFPKPYRPPVLPSHP 85

[Close]

BLAST of CmoCh04G014190 vs. NCBI nr
Match: gi|778706732|ref|XP_011655904.1| (PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGTK-GEEGEETEAEKLKLIPHHIPFYKKPLLK 63
           +++ L   LL N CYAAE+       AQG    + GEE + EK K +P HIPFYKKP+ K
Sbjct: 69  MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK 128

Query: 64  AAPKKPIPHHPILKKPFPKPRYPPVFPTHP 93
                 IP  PI+KKPFPKP  PPV P+HP
Sbjct: 129 T-----IPRQPIIKKPFPKPYRPPVLPSHP 153

[Close]

BLAST of CmoCh04G014190 vs. NCBI nr
Match: gi|307136392|gb|ADN34202.1| (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 51/121 (42.15%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGTKG---EEGEETEAEKLKLIPHHIPFYKKPL 63
           + +LL FLLL N CYAAE+ + + +  +G  G   + GEE + EK K + HH P+YKKP 
Sbjct: 386 LGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHKPYYKKPF 445

Query: 64  LKAAP----------------KKPIPHHPILKKP-------------FPKPRYPPVFPTH 93
           LK  P                KKPIP HP LKKP             F KP +PPVF TH
Sbjct: 446 LKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPIHPPVFHTH 505

[Close]

BLAST of CmoCh04G014190 vs. NCBI nr
Match: gi|659092159|ref|XP_008446928.1| (PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 51/121 (42.15%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGTKG---EEGEETEAEKLKLIPHHIPFYKKPL 63
           + +LL FLLL N CYAAE+ + + +  +G  G   + GEE + EK K + HH P+YKKP 
Sbjct: 8   LGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHKPYYKKPF 67

Query: 64  LKAAP----------------KKPIPHHPILKKP-------------FPKPRYPPVFPTH 93
           LK  P                KKPIP HP LKKP             F KP +PPVF TH
Sbjct: 68  LKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPIHPPVFHTH 127

[Close]

BLAST of CmoCh04G014190 vs. NCBI nr
Match: gi|778706736|ref|XP_011655905.1| (PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-09
Identity = 51/112 (45.54%), Postives = 63/112 (56.25%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGTKG---EEGEETEAEKLKLIPHHIPFYKKPL 63
           + +LL FLLL N CYAAE+ + + ++ +G  G   + GEE E EK K + HH P+YKKP 
Sbjct: 396 LGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEE-EDEKFKFLLHHKPYYKKPF 455

Query: 64  LKAAP------KKPIPHHPILKKP-------------FPKP-RYPPVFPTHP 93
           LK  P      KKPIP HP  KKP             F KP  +PPVF THP
Sbjct: 456 LKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP 506

The following BLAST results are available for this feature:

BLAST of CmoCh04G014190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G014190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRM7_CUCSA	1.0e-11	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1	[more]
E5GCK5_CUCME	1.7e-11	42.15	Annexin OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0KWW0_CUCSA	2.7e-09	45.54	ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1	[more]

BLAST of CmoCh04G014190 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G014190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197123\|gb\|KGN52300.1\|	1.4e-11	50.00	hypothetical protein Csa_5G623640 [Cucumis sativus]	[more]
gi\|778706732\|ref\|XP_011655904.1\|	1.4e-11	50.00	PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus]	[more]
gi\|307136392\|gb\|ADN34202.1\|	2.5e-11	42.15	annexin [Cucumis melo subsp. melo]	[more]
gi\|659092159\|ref\|XP_008446928.1\|	2.5e-11	42.15	PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo]	[more]
gi\|778706736\|ref\|XP_011655905.1\|	3.9e-09	45.54	PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G014190.1	CmoCh04G014190.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G014190	Carg01979	Silver-seed gourd	carcmoB1138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G014190	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G014190	Cucumber (Gy14) v1	cgycmoB0848
CmoCh04G014190	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G014190	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G014190	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G014190	Cucumber (Chinese Long) v2	cmocuB738
CmoCh04G014190	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G014190	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G014190	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G014190	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G014190	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G014190	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G014190	Silver-seed gourd	carcmoB0655
CmoCh04G014190	Cucumber (Chinese Long) v3	cmocucB0874
CmoCh04G014190	Watermelon (97103) v2	cmowmbB729
CmoCh04G014190	Wax gourd	cmowgoB0904