CmoCh04G013960 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G013960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 7114467 .. 7114664 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGTTGCTTCAATTTAGTGTCCATTTTCGTCCTCGCCGCCGTTGCGGTCTCGATGGTAGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCCCCTCCGATTGTGCTTCTCTTCTTTCCGGTTGGACTCATGGCGGCGCTCCTCATCCTCGCCTTTTCTCCCTCCGATGTCGGCGTCGATAATTTCGATTTATGA

mRNA sequence

ATGGTACGTTGCTTCAATTTAGTGTCCATTTTCGTCCTCGCCGCCGTTGCGGTCTCGATGGTAGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCCCCTCCGATTGTGCTTCTCTTCTTTCCGGTTGGACTCATGGCGGCGCTCCTCATCCTCGCCTTTTCTCCCTCCGATGTCGGCGTCGATAATTTCGATTTATGA

Coding sequence (CDS)

ATGGTACGTTGCTTCAATTTAGTGTCCATTTTCGTCCTCGCCGCCGTTGCGGTCTCGATGGTAGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCCCCTCCGATTGTGCTTCTCTTCTTTCCGGTTGGACTCATGGCGGCGCTCCTCATCCTCGCCTTTTCTCCCTCCGATGTCGGCGTCGATAATTTCGATTTATGA

Homology

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BLAST of CmoCh04G013960 vs. Swiss-Prot
Match: ARGOS_ARATH (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=ARGOS PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-08
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1


Query: 5   FNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSDVGVDNFD 64
           F+L S+F+L  +  S+++LPLVLPPLPPPP +LL  P+G+M  L++LAF PS     N D
Sbjct: 65  FSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPSSHSNANTD 124

Query: 65  L 66
           +
Sbjct: 125 V 125

[Close]

BLAST of CmoCh04G013960 vs. Swiss-Prot
Match: ARGOS_BRARP (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis GN=ARGOS PE=2 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-07
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 5   FNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPS 57
           F+L S+ +L  +  S+++LPLVLPPLPPPP +LL  P+G+M  L+ILAF PS
Sbjct: 72  FSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of CmoCh04G013960 vs. Swiss-Prot
Match: ARL_ARATH (ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-07
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 5   FNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPS 57
           F+L S+ VL  +  S+++LPL+LPPLPPPP +LL  P+G+M  L++LAF PS
Sbjct: 71  FSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of CmoCh04G013960 vs. TrEMBL
Match: A0A0S3SKI1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G232000 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-14
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1   MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
           MVRCF+L S+ +LAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 157

[Close]

BLAST of CmoCh04G013960 vs. TrEMBL
Match: V7BSD6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G025500g PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-14
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1  MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          MVRCF+L S+ +LAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 1  MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of CmoCh04G013960 vs. TrEMBL
Match: A0A0L9UI81_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g004200 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-14
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1   MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
           MVRCF+L S+ +LAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 157

[Close]

BLAST of CmoCh04G013960 vs. TrEMBL
Match: K7K5P8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G156100 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.9e-14
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 1  MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          M RCF L S+ VLAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 1  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of CmoCh04G013960 vs. TrEMBL
Match: I1JW38_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G135200 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-13
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 1  MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          M RCF L S+ VLAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++L FSPSD
Sbjct: 1  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLVFSPSD 57

[Close]

BLAST of CmoCh04G013960 vs. TAIR10
Match: AT3G59900.1 (AT3G59900.1 auxin-regulated gene involved in organ size)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-09
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1


Query: 5   FNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSDVGVDNFD 64
           F+L S+F+L  +  S+++LPLVLPPLPPPP +LL  P+G+M  L++LAF PS     N D
Sbjct: 65  FSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPSSHSNANTD 124

Query: 65  L 66
           +
Sbjct: 125 V 125

[Close]

BLAST of CmoCh04G013960 vs. TAIR10
Match: AT2G44080.1 (AT2G44080.1 ARGOS-like)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-08
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 5   FNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPS 57
           F+L S+ VL  +  S+++LPL+LPPLPPPP +LL  P+G+M  L++LAF PS
Sbjct: 71  FSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of CmoCh04G013960 vs. NCBI nr
Match: gi|920699213|gb|KOM42438.1| (hypothetical protein LR48_Vigan05g004200 [Vigna angularis])

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-14
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1   MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
           MVRCF+L S+ +LAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 157

[Close]

BLAST of CmoCh04G013960 vs. NCBI nr
Match: gi|593696882|ref|XP_007148923.1| (hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris])

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-14
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1  MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          MVRCF+L S+ +LAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 1  MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of CmoCh04G013960 vs. NCBI nr
Match: gi|947081278|gb|KRH30067.1| (hypothetical protein GLYMA_11G156100 [Glycine max])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 1  MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          M RCF L S+ VLAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 1  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of CmoCh04G013960 vs. NCBI nr
Match: gi|947114524|gb|KRH62826.1| (hypothetical protein GLYMA_04G135200 [Glycine max])

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-13
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 1  MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          M RCF L S+ VLAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++L FSPSD
Sbjct: 1  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLVFSPSD 57

[Close]

BLAST of CmoCh04G013960 vs. NCBI nr
Match: gi|357456395|ref|XP_003598478.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 42/57 (73.68%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 1  MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          MVRCF+L S+ +L A+A SMVVLPL+LPPLPPPP+ LLFFPVG+MAAL++LAFSPS+
Sbjct: 1  MVRCFSLGSVLILIALAASMVVLPLMLPPLPPPPLALLFFPVGIMAALVVLAFSPSE 57

The following BLAST results are available for this feature:

BLAST of CmoCh04G013960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARGOS_ARATH	2.3e-08	50.82	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=A...	[more]
ARGOS_BRARP	1.5e-07	55.77	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
ARL_ARATH	2.0e-07	53.85	ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1	[more]

BLAST of CmoCh04G013960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S3SKI1_PHAAN	3.4e-14	78.95	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G232000 PE=...	[more]
V7BSD6_PHAVU	3.4e-14	78.95	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G025500g PE=4 SV=1	[more]
A0A0L9UI81_PHAAN	3.4e-14	78.95	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g004200 PE=4 SV=1	[more]
K7K5P8_SOYBN	9.9e-14	78.95	Uncharacterized protein OS=Glycine max GN=GLYMA_11G156100 PE=4 SV=1	[more]
I1JW38_SOYBN	2.9e-13	77.19	Uncharacterized protein OS=Glycine max GN=GLYMA_04G135200 PE=4 SV=1	[more]

BLAST of CmoCh04G013960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59900.1	1.3e-09	50.82	auxin-regulated gene involved in organ size	[more]
AT2G44080.1	1.1e-08	53.85	ARGOS-like	[more]

BLAST of CmoCh04G013960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|920699213\|gb\|KOM42438.1\|	4.9e-14	78.95	hypothetical protein LR48_Vigan05g004200 [Vigna angularis]	[more]
gi\|593696882\|ref\|XP_007148923.1\|	4.9e-14	78.95	hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris]	[more]
gi\|947081278\|gb\|KRH30067.1\|	1.4e-13	78.95	hypothetical protein GLYMA_11G156100 [Glycine max]	[more]
gi\|947114524\|gb\|KRH62826.1\|	4.1e-13	77.19	hypothetical protein GLYMA_04G135200 [Glycine max]	[more]
gi\|357456395\|ref\|XP_003598478.1\|	1.6e-12	73.68	transmembrane protein, putative [Medicago truncatula]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013960.1	CmoCh04G013960.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G013960	Wax gourd	cmowgoB0891
CmoCh04G013960	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G013960	Cucumber (Gy14) v1	cgycmoB0848
CmoCh04G013960	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G013960	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G013960	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G013960	Cucumber (Chinese Long) v2	cmocuB738
CmoCh04G013960	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G013960	Watermelon (Charleston Gray)	cmowcgB662
CmoCh04G013960	Watermelon (97103) v1	cmowmB701
CmoCh04G013960	Cucurbita pepo (Zucchini)	cmocpeB648
CmoCh04G013960	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G013960	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G013960	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G013960	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G013960	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G013960	Silver-seed gourd	carcmoB0987
CmoCh04G013960	Silver-seed gourd	carcmoB1138
CmoCh04G013960	Cucumber (Chinese Long) v3	cmocucB0874
CmoCh04G013960	Watermelon (97103) v2	cmowmbB737