CmoCh04G013790 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G013790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	F-box family protein
Location	Cmo_Chr04 : 7029857 .. 7030706 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGTTCCTTGAAACGAAAATCTCAAGCTCTTGACTCTCAAATTTCAAGGTACGTTAGCTTAATTTTTGCATGCATGTTTTTTTTATTAATAAAAATTATTTGATTATTTTTCATCGTCGAGTTTTGAATAATAAATTTATTACGGTGGTTGTGACATGTTTTTGCCAATTTGGTGGCGGCTTGAGCTCTTCTTTAAGTTTGTTTCCTTCTAATTTATGATGTGTAGGATAACCAAGATGGTGCGTTTCAGTGATTTTCCACCGACCATAGAATCACTCCCAAACGATTTATTCATCGAAGTTCTGGCAAAAGTTGCCGCTTTTTCATTCACGGATTTAATCCAAGCCAAATTAGCCACCAAGGAATTTCTCAAAGCATCAAGTCATGGCTACATATTCCAGCACGCGTCCCTTAGAAACTTCCAAAAACTTCTATGGAACAACAACCCAGAGTTTTGGTCGTTCATGGAAAAATGCAACAATAACGGAAATCCAGAGACTCTATACCAGAAGGGAATGTTTGAATTCTTCACTCATTGTAGAGAAGCTTCTGGAATGGCATATTTAAAGCTTTCTGCCCAAAAAGGCTACCCAGAAGCTTGTTACGTATACGGCATCATTTTGTACGCAGCGAGTTTGGAGGATGAGGGAGTGAAATTCTTGAAGATTTGTGAGGCAAAATTAGGGTTTAAATTGGCTGAATGTCGTCGGAGAGTTAAGGAATTTGTTCGTTATCTTTGGGTTAAGAACAAGATTTCTTTGTTGGAAAAGGATTCCAGTGATCAGAGGGGCTGTGAGAGTGTGGTTAAGAATTGTTATAAGAAGAACGTGAGAAGAATTGGATGA

mRNA sequence

ATGGCCGGTTCCTTGAAACGAAAATCTCAAGCTCTTGACTCTCAAATTTCAAGGTACGTTAGCTTAATTTTTGCATGCATGATAACCAAGATGGTGCGTTTCAGTGATTTTCCACCGACCATAGAATCACTCCCAAACGATTTATTCATCGAAGTTCTGGCAAAAGTTGCCGCTTTTTCATTCACGGATTTAATCCAAGCCAAATTAGCCACCAAGGAATTTCTCAAAGCATCAAGTCATGGCTACATATTCCAGCACGCGTCCCTTAGAAACTTCCAAAAACTTCTATGGAACAACAACCCAGAGTTTTGGTCGTTCATGGAAAAATGCAACAATAACGGAAATCCAGAGACTCTATACCAGAAGGGAATGTTTGAATTCTTCACTCATTGTAGAGAAGCTTCTGGAATGGCATATTTAAAGCTTTCTGCCCAAAAAGGCTACCCAGAAGCTTGTTACGTATACGGCATCATTTTGTACGCAGCGAGTTTGGAGGATGAGGGAGTGAAATTCTTGAAGATTTGTGAGGCAAAATTAGGGTTTAAATTGGCTGAATGTCGTCGGAGAGTTAAGGAATTTGTTCGTTATCTTTGGGTTAAGAACAAGATTTCTTTGTTGGAAAAGGATTCCAGTGATCAGAGGGGCTGTGAGAGTGTGGTTAAGAATTGTTATAAGAAGAACGTGAGAAGAATTGGATGA

Coding sequence (CDS)

ATGGCCGGTTCCTTGAAACGAAAATCTCAAGCTCTTGACTCTCAAATTTCAAGGTACGTTAGCTTAATTTTTGCATGCATGATAACCAAGATGGTGCGTTTCAGTGATTTTCCACCGACCATAGAATCACTCCCAAACGATTTATTCATCGAAGTTCTGGCAAAAGTTGCCGCTTTTTCATTCACGGATTTAATCCAAGCCAAATTAGCCACCAAGGAATTTCTCAAAGCATCAAGTCATGGCTACATATTCCAGCACGCGTCCCTTAGAAACTTCCAAAAACTTCTATGGAACAACAACCCAGAGTTTTGGTCGTTCATGGAAAAATGCAACAATAACGGAAATCCAGAGACTCTATACCAGAAGGGAATGTTTGAATTCTTCACTCATTGTAGAGAAGCTTCTGGAATGGCATATTTAAAGCTTTCTGCCCAAAAAGGCTACCCAGAAGCTTGTTACGTATACGGCATCATTTTGTACGCAGCGAGTTTGGAGGATGAGGGAGTGAAATTCTTGAAGATTTGTGAGGCAAAATTAGGGTTTAAATTGGCTGAATGTCGTCGGAGAGTTAAGGAATTTGTTCGTTATCTTTGGGTTAAGAACAAGATTTCTTTGTTGGAAAAGGATTCCAGTGATCAGAGGGGCTGTGAGAGTGTGGTTAAGAATTGTTATAAGAAGAACGTGAGAAGAATTGGATGA

Homology

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BLAST of CmoCh04G013790 vs. Swiss-Prot
Match: FB79_ARATH (Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.4e-16
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 1


Query: 41  IESLPNDLFIEVLAKVAAFSFTDLIQAKLATKEFLKASSHGYIFQHASLRNFQKLLWNNN 100
           ++SLP DL +E+ +   A S + +   +L +K F +     Y+F   SL+  + L W+ N
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHEN 83

Query: 101 PEFWSFMEKCNNNGNPETLYQKGMFEFFTHCREASGMAYLKLSAQKGYPEACYVYGIIL 160
                F+E+C  + NPE L+QKG   +F    +  G+ YL  +A+KG  EA YVYG+IL
Sbjct: 84  SA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVIL 140

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BLAST of CmoCh04G013790 vs. TrEMBL
Match: A0A0A0LS96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 8.3e-71
Identity = 142/219 (64.84%), Postives = 170/219 (77.63%), Query Frame = 1


Query: 6   KRKSQALDSQISRYVSLIFACMITKMVRFSDFPPT-IESLPNDLFIEVLAKVAAFSFTDL 65
           KR S ALD+QISR         IT+  +     PT I+SLPNDL  EVLAKVA  S+ DL
Sbjct: 7   KRDSVALDTQISR---------ITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDL 66

Query: 66  IQAKLATKEFLKASSHGYIFQHASLRNFQKLLWNNNPEFWSFMEKCNNNGNPETLYQKGM 125
           IQAKLATK FL+AS+  YIFQH SL NF+ LLWNN+P+FWSFME CNN+ NPE+LY+KGM
Sbjct: 67  IQAKLATKHFLEASNDRYIFQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGM 126

Query: 126 FEFFTHCREASGMAYLKLSAQKGYPEACYVYGIILYAASLEDEGVKFLKICEAKLGFKLA 185
            EFFTHC+EASGMAYLK SAQKGY +ACYV+G+ILYA++L+DEG++FLK  E KLG K+ 
Sbjct: 127 LEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMI 186

Query: 186 ECRRRVKEFVRYLWVKNKISLLEKDSSDQRGCESVVKNC 224
           ECR+RVKEFV Y+W+KNKISL E DSS  R C+  + NC
Sbjct: 187 ECRQRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNI-NC 215

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BLAST of CmoCh04G013790 vs. TrEMBL
Match: A5AV49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-28
Identity = 74/178 (41.57%), Postives = 107/178 (60.11%), Query Frame = 1


Query: 30  KMVRFSDFPPTIESLPNDLFIEVLAKVAAFSFTDLIQAKLATKEFLKASSHGYIFQHASL 89
           K  + + +  TIESL +DL IEVL +VA+ SFTDL  AKL+ + FL+AS   ++ ++ S+
Sbjct: 4   KKTKRNSYGSTIESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISI 63

Query: 90  RNFQKL-LWNNNPEFWSFMEKCNNNGNPETLYQKGMFEFFTHCREASGMAYLKLSAQKGY 149
             F  +  W    E  SF++ C  +GNPE LY++GM EFF+  +  S   YLK + + G+
Sbjct: 64  EKFPTIPWWQVKDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGH 123

Query: 150 PEACYVYGIILYAA---SLEDEGVKFLKICEAKLGFKLAECRRRVKEFVRYLWVKNKI 204
            EA YVYGIIL      S E++G+K L     K   KL ECR+R + F   +W++N I
Sbjct: 124 MEASYVYGIILLCKGGDSNEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPI 179

[Close]

BLAST of CmoCh04G013790 vs. TrEMBL
Match: A0A0B2P0Z6_GLYSO (Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 70/168 (41.67%), Postives = 100/168 (59.52%), Query Frame = 1


Query: 40  TIESLPNDLFIEVLAKVAAFSFTDLIQAKLATKEFLKASSHGYIFQHASLRNFQ--KLLW 99
           TI+SLP +L +E+ AKVA  S  D    KL  KEFL A+   Y+++HAS+ NF    L W
Sbjct: 21  TIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASMENFALVPLPW 80

Query: 100 NNNPEFWSFMEKCNNNGNPETLYQKGMFEFFTHCREASGMAYLKLSAQKGYPEACYVYGI 159
               +  SF+++C  +GN E LY++GM ++FT  R   G+  LK +A +G+ +A YVY +
Sbjct: 81  FTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAKYVYCM 140

Query: 160 ILYAASLEDEGVK---FLKICEAKLGFKLAECRRRVKEFVRYLWVKNK 203
           +L     EDEG +   F   C  K    +  CR+RVK FVR +W+KNK
Sbjct: 141 LLMCG--EDEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNK 186

[Close]

BLAST of CmoCh04G013790 vs. TrEMBL
Match: I1KMZ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 70/168 (41.67%), Postives = 100/168 (59.52%), Query Frame = 1


Query: 40  TIESLPNDLFIEVLAKVAAFSFTDLIQAKLATKEFLKASSHGYIFQHASLRNFQ--KLLW 99
           TI+SLP +L +E+ AKVA  S  D    KL  KEFL A+   Y+++HAS+ NF    L W
Sbjct: 21  TIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASMENFALVPLPW 80

Query: 100 NNNPEFWSFMEKCNNNGNPETLYQKGMFEFFTHCREASGMAYLKLSAQKGYPEACYVYGI 159
               +  SF+++C  +GN E LY++GM ++FT  R   G+  LK +A +G+ +A YVY +
Sbjct: 81  FTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAKYVYCM 140

Query: 160 ILYAASLEDEGVK---FLKICEAKLGFKLAECRRRVKEFVRYLWVKNK 203
           +L     EDEG +   F   C  K    +  CR+RVK FVR +W+KNK
Sbjct: 141 LLMCG--EDEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNK 186

[Close]

BLAST of CmoCh04G013790 vs. TrEMBL
Match: B9I6Z5_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 71/191 (37.17%), Postives = 110/191 (57.59%), Query Frame = 1


Query: 45  PNDLFIEVLAKVAAFSFTDLIQAKLATKEFLKASSHGYIFQHASLRNFQKLLWNNNPEFW 104
           P DL  EVLA+VA+ S +DL  AKL+ KEFL+A+S  YIF+H ++     + W  +    
Sbjct: 18  PKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHITIEKLPVIPWRISHGAS 77

Query: 105 SFMEKCNNNGNPETLYQKGMFEFFTHCREASGMAYLKLSAQKGYPEACYVYGIIL--YAA 164
           SF+ +C  NGNPE L+++GM EFF+  +  SG  +LK +A+KG+ EA Y  G+IL  +  
Sbjct: 78  SFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAARKGHVEAIYTCGVILVCHGG 137

Query: 165 SLEDEGVKFLKICE--AKLGFKLAECRRRVKEFVRYLWVKNKISLL--EKDSSDQRGCES 224
             + EG++ L   +        + ECR ++KE ++ +W+  + + +  E+  S  R C  
Sbjct: 138 QFKQEGIELLSSLKNYKSRHRTIKECRDKIKEILQSMWIDRREAGIGPEEPKSHGRTC-- 197

Query: 225 VVKNCYKKNVR 230
              NC K N R
Sbjct: 198 ---NCSKFNKR 203

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BLAST of CmoCh04G013790 vs. TAIR10
Match: AT1G67623.1 (AT1G67623.1 F-box family protein)

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-17
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 1


Query: 41  IESLPNDLFIEVLAKVAAFSFTDLIQAKLATKEFLKASSHGYIFQHASLRNFQKLLWNNN 100
           ++SLP DL +E+ +   A S + +   +L +K F +     Y+F   SL+  + L W+ N
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHEN 83

Query: 101 PEFWSFMEKCNNNGNPETLYQKGMFEFFTHCREASGMAYLKLSAQKGYPEACYVYGIIL 160
                F+E+C  + NPE L+QKG   +F    +  G+ YL  +A+KG  EA YVYG+IL
Sbjct: 84  SA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVIL 140

[Close]

BLAST of CmoCh04G013790 vs. TAIR10
Match: AT1G74875.1 (AT1G74875.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-13
Identity = 38/114 (33.33%), Postives = 64/114 (56.14%), Query Frame = 1


Query: 50  IEVLAKVAAFSFTDLIQAKLATKEFLKASSHGYIFQHASLRNFQKLLWNNNPEFWSFMEK 109
           I ++  V + S ++    +L +K F + S+  YI Q  SL     L W N  +F +F ++
Sbjct: 21  IHLVINVLSSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHNFFKR 80

Query: 110 CNNNGNPETLYQKGMFEFF---THCREAS-GMAYLKLSAQKGYPEACYVYGIIL 160
           C  +GN E +Y+KG+ ++F   +H R+   G+ ++  +A  G  EA YVYG+IL
Sbjct: 81  CRKSGNLEAIYRKGLVDYFHRDSHERQRDRGLKHIAKTANNGNQEAQYVYGLIL 134

[Close]

BLAST of CmoCh04G013790 vs. TAIR10
Match: AT2G35280.1 (AT2G35280.1 F-box family protein)

HSP 1 Score: 51.6 bits (122), Expect = 7.5e-07
Identity = 37/138 (26.81%), Postives = 65/138 (47.10%), Query Frame = 1


Query: 41  IESLPNDLFIEVLAKVAAFSFTDLIQAKLATKEFLKASSHGYIFQHASLRNFQKLLWNNN 100
           +E+LP DL  E++AK+   S  D     L+ KE   +++   + +  +L    K   +  
Sbjct: 11  LEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPLSCR 70

Query: 101 PEFWSFMEKCNNNGNPETLYQKGMFEFFT--HCREASGMAYLKLSAQKGYPEACYVYGII 160
                 M+KC  N NP+  Y KG+  +F   HC     + ++ ++A  G  EA Y+Y ++
Sbjct: 71  KHLL-IMKKCLANNNPDAHYIKGIIWYFNLDHC--DVDLHHIGIAANGGQKEAIYMYAML 130

Query: 161 LYAASLEDEGVKFLKICE 177
           L      +EG  ++   E
Sbjct: 131 LLCRGRTEEGKTYMSQLE 145

[Close]

BLAST of CmoCh04G013790 vs. NCBI nr
Match: gi|449439561|ref|XP_004137554.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 1.2e-70
Identity = 142/219 (64.84%), Postives = 170/219 (77.63%), Query Frame = 1


Query: 6   KRKSQALDSQISRYVSLIFACMITKMVRFSDFPPT-IESLPNDLFIEVLAKVAAFSFTDL 65
           KR S ALD+QISR         IT+  +     PT I+SLPNDL  EVLAKVA  S+ DL
Sbjct: 7   KRDSVALDTQISR---------ITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDL 66

Query: 66  IQAKLATKEFLKASSHGYIFQHASLRNFQKLLWNNNPEFWSFMEKCNNNGNPETLYQKGM 125
           IQAKLATK FL+AS+  YIFQH SL NF+ LLWNN+P+FWSFME CNN+ NPE+LY+KGM
Sbjct: 67  IQAKLATKHFLEASNDRYIFQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGM 126

Query: 126 FEFFTHCREASGMAYLKLSAQKGYPEACYVYGIILYAASLEDEGVKFLKICEAKLGFKLA 185
            EFFTHC+EASGMAYLK SAQKGY +ACYV+G+ILYA++L+DEG++FLK  E KLG K+ 
Sbjct: 127 LEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMI 186

Query: 186 ECRRRVKEFVRYLWVKNKISLLEKDSSDQRGCESVVKNC 224
           ECR+RVKEFV Y+W+KNKISL E DSS  R C+  + NC
Sbjct: 187 ECRQRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNI-NC 215

[Close]

BLAST of CmoCh04G013790 vs. NCBI nr
Match: gi|659107472|ref|XP_008453691.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 1.4e-63
Identity = 127/193 (65.80%), Postives = 152/193 (78.76%), Query Frame = 1


Query: 38  PPTIESLPNDLFIEVLAKVAAFSFTDLIQAKLATKEFLKASSHGYIFQHASLRNFQKLLW 97
           P  I+SLPNDL  EVLAKVAA S+ DL+QAKLATK+FL+AS   YIFQH SL NF+  LW
Sbjct: 30  PTVIKSLPNDLLTEVLAKVAASSYVDLVQAKLATKQFLEASKDRYIFQHVSLGNFENHLW 89

Query: 98  NNNPEFWSFMEKCNNNGNPETLYQKGMFEFFTHCREASGMAYLKLSAQKGYPEACYVYGI 157
           NN+PEFWSF+E CNNN NPE+LY+KGM EFFTHC+EASG+AYLKLSAQKGY +ACYV  +
Sbjct: 90  NNSPEFWSFIETCNNNENPESLYRKGMLEFFTHCKEASGLAYLKLSAQKGYVDACYVCSV 149

Query: 158 ILYAASLEDEGVKFLKICEAKLGFKLAECRRRVKEFVRYLWVKNKISLLEKDSSDQRGCE 217
           ILYA+  +DEG +FLK  EAKL  K+AECR RVK FV YLW+KN+IS   +D +D R C+
Sbjct: 150 ILYASKAKDEGFEFLKNHEAKLRNKMAECRWRVKRFVSYLWIKNRISSSGEDPND-RKCD 209

Query: 218 SVVKNCYKKNVRR 231
             + NC + N RR
Sbjct: 210 KNI-NC-RVNERR 219

[Close]

BLAST of CmoCh04G013790 vs. NCBI nr
Match: gi|449435498|ref|XP_004135532.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 5.9e-62
Identity = 133/216 (61.57%), Postives = 164/216 (75.93%), Query Frame = 1


Query: 1   MAGSLKRKSQ-ALDSQISRYVSLIFACMITKMVR-FSDFPPTIESLPNDLFIEVLAKVAA 60
           MA  LKRKS+ + +SQIS            KM R FS     I SLPNDL IEVLAKVAA
Sbjct: 1   MANQLKRKSEPSFNSQISTRTK--------KMCRPFSS--SLIVSLPNDLLIEVLAKVAA 60

Query: 61  FSFTDLIQAKLATKEFLKASSHGYIFQHASLRN--FQKLLWNNNPEFWSFMEKCNNNGNP 120
            S+ DL+QAKLATK FL AS+ GYIFQH SL N  F+ LLWNN P+  SFME  NNN NP
Sbjct: 61  SSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRNLLWNNTPQSRSFMETLNNNENP 120

Query: 121 ETLYQKGMFEFFTHCREASGMAYLKLSAQKGYPEACYVYGIILYAASLEDEGVKFLKICE 180
           E+LY+KG  EFF+H +EASG++YLK SAQKGY +ACYVYG+++YAA+L++EGV++LK+CE
Sbjct: 121 ESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYVYGVVMYAANLKEEGVEYLKMCE 180

Query: 181 AKLGFKLAECRRRVKEFVRYLWVKNKISLLEKDSSD 213
           AKLG K+AECRRRVKEFV Y W+KN+IS+ ++  S+
Sbjct: 181 AKLGNKMAECRRRVKEFVWYFWIKNRISMSKEICSN 206

[Close]

BLAST of CmoCh04G013790 vs. NCBI nr
Match: gi|147773103|emb|CAN71689.1| (hypothetical protein VITISV_039291 [Vitis vinifera])

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 74/178 (41.57%), Postives = 107/178 (60.11%), Query Frame = 1


Query: 30  KMVRFSDFPPTIESLPNDLFIEVLAKVAAFSFTDLIQAKLATKEFLKASSHGYIFQHASL 89
           K  + + +  TIESL +DL IEVL +VA+ SFTDL  AKL+ + FL+AS   ++ ++ S+
Sbjct: 4   KKTKRNSYGSTIESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISI 63

Query: 90  RNFQKL-LWNNNPEFWSFMEKCNNNGNPETLYQKGMFEFFTHCREASGMAYLKLSAQKGY 149
             F  +  W    E  SF++ C  +GNPE LY++GM EFF+  +  S   YLK + + G+
Sbjct: 64  EKFPTIPWWQVKDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGH 123

Query: 150 PEACYVYGIILYAA---SLEDEGVKFLKICEAKLGFKLAECRRRVKEFVRYLWVKNKI 204
            EA YVYGIIL      S E++G+K L     K   KL ECR+R + F   +W++N I
Sbjct: 124 MEASYVYGIILLCKGGDSNEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPI 179

[Close]

BLAST of CmoCh04G013790 vs. NCBI nr
Match: gi|731376767|ref|XP_010656578.1| (PREDICTED: putative F-box protein At1g67623 [Vitis vinifera])

HSP 1 Score: 133.7 bits (335), Expect = 4.3e-28
Identity = 74/168 (44.05%), Postives = 103/168 (61.31%), Query Frame = 1


Query: 40  TIESLPNDLFIEVLAKVAAFSFTDLIQAKLATKEFLKASSHGYIFQHASLRNFQKL-LWN 99
           TIE LP+DL IEVL +VA  SFTDL  AKL+ + FL+AS   +I ++ S+  F  +  W 
Sbjct: 14  TIEYLPSDLLIEVLTRVATSSFTDLFNAKLSCRNFLEASDDKFIMKNISIEKFPAIPWWQ 73

Query: 100 NNPEFWSFMEKCNNNGNPETLYQKGMFEFFTHCREASGMAYLKLSAQKGYPEACYVYGII 159
              E  SF++ C  +GNPE LY++GM EFF+  +  SG  YLK + +  + EA YVYGII
Sbjct: 74  VKDEVSSFLKACKESGNPEALYRQGMMEFFSWKKVESGEEYLKRALEMEHMEASYVYGII 133

Query: 160 LY---AASLEDEGVKFLKICEAKLGFKLAECRRRVKEFVRYLWVKNKI 204
           L      S E++G+K L     K   KL ECR++ K F+  +W++N I
Sbjct: 134 LLCKGGESNEEQGMKLLN--AVKKSRKLGECRKKTKAFILSMWIRNPI 179

The following BLAST results are available for this feature:

BLAST of CmoCh04G013790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB79_ARATH	6.4e-16	36.13	Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1	[more]

BLAST of CmoCh04G013790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS96_CUCSA	8.3e-71	64.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1	[more]
A5AV49_VITVI	2.3e-28	41.57	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1	[more]
A0A0B2P0Z6_GLYSO	1.1e-25	41.67	Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1	[more]
I1KMZ2_SOYBN	1.1e-25	41.67	Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2	[more]
B9I6Z5_POPTR	1.1e-25	37.17	F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1	[more]

BLAST of CmoCh04G013790 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67623.1	3.6e-17	36.13	F-box family protein	[more]
AT1G74875.1	7.0e-13	33.33	FUNCTIONS IN: molecular_function unknown	[more]
AT2G35280.1	7.5e-07	26.81	F-box family protein	[more]

BLAST of CmoCh04G013790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439561\|ref\|XP_004137554.1\|	1.2e-70	64.84	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|659107472\|ref\|XP_008453691.1\|	1.4e-63	65.80	PREDICTED: putative F-box protein At1g67623 [Cucumis melo]	[more]
gi\|449435498\|ref\|XP_004135532.1\|	5.9e-62	61.57	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|147773103\|emb\|CAN71689.1\|	3.3e-28	41.57	hypothetical protein VITISV_039291 [Vitis vinifera]	[more]
gi\|731376767\|ref\|XP_010656578.1\|	4.3e-28	44.05	PREDICTED: putative F-box protein At1g67623 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013790.1	CmoCh04G013790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 102..161 score: 6.
None	No IPR available	PANTHER	PTHR33784	FAMILY NOT NAMED	coord: 27..230 score: 7.8
None	No IPR available	PANTHER	PTHR33784:SF4	SUBFAMILY NOT NAMED	coord: 27..230 score: 7.8
None	No IPR available	unknown	SSF81901	HCP-like	coord: 69..168 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G013790	Silver-seed gourd	carcmoB0986
CmoCh04G013790	Silver-seed gourd	carcmoB0987
CmoCh04G013790	Silver-seed gourd	carcmoB1138
CmoCh04G013790	Cucumber (Chinese Long) v3	cmocucB0849
CmoCh04G013790	Watermelon (97103) v2	cmowmbB698
CmoCh04G013790	Wax gourd	cmowgoB0891
CmoCh04G013790	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G013790	Cucurbita moschata (Rifu)	cmocmoB343
CmoCh04G013790	Cucumber (Gy14) v1	cgycmoB0124
CmoCh04G013790	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G013790	Cucurbita maxima (Rimu)	cmacmoB425
CmoCh04G013790	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G013790	Wild cucumber (PI 183967)	cmocpiB725
CmoCh04G013790	Cucumber (Chinese Long) v2	cmocuB717
CmoCh04G013790	Melon (DHL92) v3.5.1	cmomeB644
CmoCh04G013790	Watermelon (Charleston Gray)	cmowcgB624
CmoCh04G013790	Watermelon (97103) v1	cmowmB724
CmoCh04G013790	Cucurbita pepo (Zucchini)	cmocpeB648
CmoCh04G013790	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G013790	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G013790	Bottle gourd (USVL1VR-Ls)	cmolsiB669
CmoCh04G013790	Cucumber (Gy14) v2	cgybcmoB628
CmoCh04G013790	Melon (DHL92) v3.6.1	cmomedB734