CmoCh04G013780 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G013780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	F-box family protein
Location	Cmo_Chr04 : 7027274 .. 7028249 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGTTCCCTGAAACGAAAATCTCAAGCTCTTCGCTCTCAGATTTCAGGGTACATTACCTTAATTTTTGCATGCATGCTTTTTTATCAATAAAAATTATTTAACTATTTTTCGTCTACGAGTTTTCAATAATAAATTTATTACCACGGTTGCGACCCAGTTCTGCCGATTTGGCAGTGGCTCGAGCTCTTTTTTAATTGTTTCCCTCTAATTTATGATGTGCAGGACAATTAAAATGGCGCGTTTTAGTGCTTCTCCACCGCCCATAGAATCACTCCCAAACGATTTATTGATCGAAGTTCTGGCAAAAGTTGCAGCTTCTTCATTCACCGACTTAGTCCATGCCAAACTAGCCACTAAAAAATTTCTCGAAGCATCAAGCCACAACTACATATTCCAACACGCATCTCTTGAAAACTTCCATAAACTTCTATGGAACAACAGCAAAGAGTTTTGGTCGTTCATGGAAAAATGCAACAATAACGGAAACCCAGAGACTTTATACCGAAAGGGAATGCTGGAATTCTTCACTCATTGTAGAGAAGCTTCTGGAATGGCATATTTAAAGCTTTCTGCCCAAAAAGGCTACCCGGATGCTTGTTACGTATACGGCATCATTCTGTACGCAACGAGTATGGAGGATGAGGGAGTAAAGTTCTTGAAAATTTGTGAGGCAAAATTAGGGTTTAAACTGGCTAAATGTCGCGGGAGAGTTAAGGAATTTATTTATTATCTTTGGGTTAAGAACAAGATTTATGTACTGGAAAATGATTCCAGTAATCGAAGGGGCTGTGAGAGTGTGATTAAGAATTGTTGTAGGAAGAATGTGAGAAGAATTGGATGTGATTGGAATGATGAGGATGATTATTATGGAGAACACACGTGCGAAGCGTGTAAATGGAATGGGGAAGTTTTGAGATTTTGTAATATGCTTAGAACCGGGAGTTATAATATTATGGAATGGGACTTGTAA

mRNA sequence

ATGGCCGGTTCCCTGAAACGAAAATCTCAAGCTCTTCGCTCTCAGATTTCAGGGACAATTAAAATGGCGCGTTTTAGTGCTTCTCCACCGCCCATAGAATCACTCCCAAACGATTTATTGATCGAAGTTCTGGCAAAAGTTGCAGCTTCTTCATTCACCGACTTAGTCCATGCCAAACTAGCCACTAAAAAATTTCTCGAAGCATCAAGCCACAACTACATATTCCAACACGCATCTCTTGAAAACTTCCATAAACTTCTATGGAACAACAGCAAAGAGTTTTGGTCGTTCATGGAAAAATGCAACAATAACGGAAACCCAGAGACTTTATACCGAAAGGGAATGCTGGAATTCTTCACTCATTGTAGAGAAGCTTCTGGAATGGCATATTTAAAGCTTTCTGCCCAAAAAGGCTACCCGGATGCTTGTTACGTATACGGCATCATTCTGTACGCAACGAGTATGGAGGATGAGGGAGTAAAGTTCTTGAAAATTTGTGAGGCAAAATTAGGGTTTAAACTGGCTAAATGTCGCGGGAGAGTTAAGGAATTTATTTATTATCTTTGGGTTAAGAACAAGATTTATGTACTGGAAAATGATTCCAGTAATCGAAGGGGCTGTGAGAGTGTGATTAAGAATTGTTGTAGGAAGAATGTGAGAAGAATTGGATGTGATTGGAATGATGAGGATGATTATTATGGAGAACACACGTGCGAAGCGTGTAAATGGAATGGGGAAGTTTTGAGATTTTGTAATATGCTTAGAACCGGGAGTTATAATATTATGGAATGGGACTTGTAA

Coding sequence (CDS)

ATGGCCGGTTCCCTGAAACGAAAATCTCAAGCTCTTCGCTCTCAGATTTCAGGGACAATTAAAATGGCGCGTTTTAGTGCTTCTCCACCGCCCATAGAATCACTCCCAAACGATTTATTGATCGAAGTTCTGGCAAAAGTTGCAGCTTCTTCATTCACCGACTTAGTCCATGCCAAACTAGCCACTAAAAAATTTCTCGAAGCATCAAGCCACAACTACATATTCCAACACGCATCTCTTGAAAACTTCCATAAACTTCTATGGAACAACAGCAAAGAGTTTTGGTCGTTCATGGAAAAATGCAACAATAACGGAAACCCAGAGACTTTATACCGAAAGGGAATGCTGGAATTCTTCACTCATTGTAGAGAAGCTTCTGGAATGGCATATTTAAAGCTTTCTGCCCAAAAAGGCTACCCGGATGCTTGTTACGTATACGGCATCATTCTGTACGCAACGAGTATGGAGGATGAGGGAGTAAAGTTCTTGAAAATTTGTGAGGCAAAATTAGGGTTTAAACTGGCTAAATGTCGCGGGAGAGTTAAGGAATTTATTTATTATCTTTGGGTTAAGAACAAGATTTATGTACTGGAAAATGATTCCAGTAATCGAAGGGGCTGTGAGAGTGTGATTAAGAATTGTTGTAGGAAGAATGTGAGAAGAATTGGATGTGATTGGAATGATGAGGATGATTATTATGGAGAACACACGTGCGAAGCGTGTAAATGGAATGGGGAAGTTTTGAGATTTTGTAATATGCTTAGAACCGGGAGTTATAATATTATGGAATGGGACTTGTAA

Homology

[Close]

BLAST of CmoCh04G013780 vs. Swiss-Prot
Match: FB79_ARATH (Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.6e-15
Identity = 47/140 (33.57%), Postives = 79/140 (56.43%), Query Frame = 1


Query: 11  ALRSQISGTIKMARFSASPPPIESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASS 70
           +L    S +I+ ++  AS   ++SLP DLL+E+ +   ASS + + + +L +K F     
Sbjct: 4   SLSLHASSSIRKSKTKASLC-LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICD 63

Query: 71  HNYIFQHASLENFHKLLWNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREASGMAY 130
             Y+F   SL+    L W+ +     F+E+C  + NPE L++KG + +F    +  G+ Y
Sbjct: 64  EKYVFYRLSLKEIEFLPWHENSA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEY 123

Query: 131 LKLSAQKGYPDACYVYGIIL 151
           L  +A+KG  +A YVYG+IL
Sbjct: 124 LAEAAEKGIKEAKYVYGVIL 140

[Close]

BLAST of CmoCh04G013780 vs. Swiss-Prot
Match: FB127_ARATH (F-box protein At2g35280 OS=Arabidopsis thaliana GN=At2g35280 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-06
Identity = 37/138 (26.81%), Postives = 69/138 (50.00%), Query Frame = 1


Query: 32  IESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLLWNNS 91
           +E+LP DLL E++AK+   S  D  +  L+ K+   +++   + +  +L    K   +  
Sbjct: 11  LEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPLSCR 70

Query: 92  KEFWSFMEKCNNNGNPETLYRKGMLEFFT--HCREASGMAYLKLSAQKGYPDACYVYGII 151
           K     M+KC  N NP+  Y KG++ +F   HC     + ++ ++A  G  +A Y+Y ++
Sbjct: 71  KHLL-IMKKCLANNNPDAHYIKGIIWYFNLDHC--DVDLHHIGIAANGGQKEAIYMYAML 130

Query: 152 LYATSMEDEGVKFLKICE 168
           L      +EG  ++   E
Sbjct: 131 LLCRGRTEEGKTYMSQLE 145

[Close]

BLAST of CmoCh04G013780 vs. TrEMBL
Match: A0A0A0LS96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 4.2e-87
Identity = 165/256 (64.45%), Postives = 196/256 (76.56%), Query Frame = 1


Query: 6   KRKSQALRSQISGTIKMARFSA-SPPPIESLPNDLLIEVLAKVAASSFTDLVHAKLATKK 65
           KR S AL +QIS   +  +    SP  I+SLPNDLL EVLAKVA SS+ DL+ AKLATK 
Sbjct: 7   KRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKH 66

Query: 66  FLEASSHNYIFQHASLENFHKLLWNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCRE 125
           FLEAS+  YIFQH SL NF  LLWNNS +FWSFME CNN+ NPE+LYRKGMLEFFTHC+E
Sbjct: 67  FLEASNDRYIFQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKE 126

Query: 126 ASGMAYLKLSAQKGYPDACYVYGIILYATSMEDEGVKFLKICEAKLGFKLAKCRGRVKEF 185
           ASGMAYLK SAQKGY DACYV+G+ILYA++++DEG++FLK  E KLG K+ +CR RVKEF
Sbjct: 127 ASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEF 186

Query: 186 IYYLWVKNKIYVLENDSSNRRGCESVIKNCCRKNVRRIGCDWNDEDDYYGEHTCEACKWN 245
           + Y+W+KNKI + E DSS  R C+  I   CR N +    D  DEDDYYG++TCE CKWN
Sbjct: 187 VSYIWIKNKISLSEGDSSYGRKCDKNIN--CRVNEKINVWDSKDEDDYYGKYTCEECKWN 246

Query: 246 GEVLRFCNMLRTGSYN 261
            EVLRFC MLRTG ++
Sbjct: 247 NEVLRFCKMLRTGRFS 260

[Close]

BLAST of CmoCh04G013780 vs. TrEMBL
Match: A5AV49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.4e-35
Identity = 97/235 (41.28%), Postives = 135/235 (57.45%), Query Frame = 1


Query: 32  IESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLLWNNS 91
           IESL +DLLIEVL +VA+SSFTDL +AKL+ + FLEAS   ++ ++ S+E F  + W   
Sbjct: 15  IESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISIEKFPTIPWWQV 74

Query: 92  K-EFWSFMEKCNNNGNPETLYRKGMLEFFTHCREASGMAYLKLSAQKGYPDACYVYGIIL 151
           K E  SF++ C  +GNPE LYR+GM+EFF+  +  S   YLK + + G+ +A YVYGIIL
Sbjct: 75  KDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVYGIIL 134

Query: 152 Y---ATSMEDEGVKFLKICEAKLGFKLAKCRGRVKEFIYYLWVKNKIYVLENDSSNRRGC 211
                 S E++G+K L     K   KL +CR R + F   +W++N I   +  +S     
Sbjct: 135 LCKGGDSNEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPIVKCQELTSYH--- 194

Query: 212 ESVIKNCCRKNVRRI----GCDW--NDED-DYYGEHTCEACKWNGEVLRFCNMLR 256
                 C R+N   I    G  W  +DED D    + CEAC W+ EV  FC + R
Sbjct: 195 ---ANTCGRRNNGGIGGKRGWPWIEDDEDKDVEEVNYCEACIWDDEVSLFCKLFR 241

[Close]

BLAST of CmoCh04G013780 vs. TrEMBL
Match: B9I6Z5_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 87/232 (37.50%), Postives = 133/232 (57.33%), Query Frame = 1


Query: 36  PNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLLWNNSKEFW 95
           P DLL EVLA+VA++S +DL  AKL+ K+FLEA+S NYIF+H ++E    + W  S    
Sbjct: 18  PKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHITIEKLPVIPWRISHGAS 77

Query: 96  SFMEKCNNNGNPETLYRKGMLEFFTHCREASGMAYLKLSAQKGYPDACYVYGIIL--YAT 155
           SF+ +C  NGNPE L+R+GM+EFF+  +  SG  +LK +A+KG+ +A Y  G+IL  +  
Sbjct: 78  SFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAARKGHVEAIYTCGVILVCHGG 137

Query: 156 SMEDEGVKFLKICE--AKLGFKLAKCRGRVKEFIYYLWVKNKIYVL--ENDSSNRRGCES 215
             + EG++ L   +        + +CR ++KE +  +W+  +   +  E   S+ R C  
Sbjct: 138 QFKQEGIELLSSLKNYKSRHRTIKECRDKIKEILQSMWIDRREAGIGPEEPKSHGRTC-- 197

Query: 216 VIKNCCRKNVRRIGCDWNDEDDYYGEHTCEACKWNGEVLRFCNMLRTGSYNI 262
              NC + N R     W DE++Y    TC+ C W+ E   FC +LR   + I
Sbjct: 198 ---NCSKFNKR----GWIDEEEY---TTCDYCVWDHEATLFCKILRARGFGI 237

[Close]

BLAST of CmoCh04G013780 vs. TrEMBL
Match: A0A0B2P0Z6_GLYSO (Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.2e-30
Identity = 86/233 (36.91%), Postives = 129/233 (55.36%), Query Frame = 1


Query: 26  SASPPPIESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFH- 85
           S S   I+SLP +L +E+ AKVA  S  D    KL  K+FL A+  +Y+++HAS+ENF  
Sbjct: 16  SVSVTTIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASMENFAL 75

Query: 86  -KLLWNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREASGMAYLKLSAQKGYPDAC 145
             L W    +  SF+++C  +GN E LYR+GML++FT  R   G+  LK +A +G+ DA 
Sbjct: 76  VPLPWFTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAK 135

Query: 146 YVYGIILYATSMEDEGVK---FLKICEAKLGFKLAKCRGRVKEFIYYLWVKNKIYVLEND 205
           YVY ++L     EDEG +   F   C  K    + +CR RVK F+  +W+KNK     N 
Sbjct: 136 YVYCMLLMCG--EDEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNK----PNG 195

Query: 206 SSNRRGCESVIKNCCRKNVRRIGCDWNDEDDYYGEHTCEACKWNGEVLRFCNM 254
            S+  G  +    C  +  +++   W+  +D  G  +C+ C  + E+  FCNM
Sbjct: 196 KSSFCGSGT----CDSERQKQLSKRWSSFEDKDGGISCQRCGADHELGFFCNM 238

[Close]

BLAST of CmoCh04G013780 vs. TrEMBL
Match: I1KMZ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2)

HSP 1 Score: 139.4 bits (350), Expect = 6.2e-30
Identity = 86/233 (36.91%), Postives = 129/233 (55.36%), Query Frame = 1


Query: 26  SASPPPIESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFH- 85
           S S   I+SLP +L +E+ AKVA  S  D    KL  K+FL A+  +Y+++HAS+ENF  
Sbjct: 16  SVSVTTIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASMENFAL 75

Query: 86  -KLLWNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREASGMAYLKLSAQKGYPDAC 145
             L W    +  SF+++C  +GN E LYR+GML++FT  R   G+  LK +A +G+ DA 
Sbjct: 76  VPLPWFTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAK 135

Query: 146 YVYGIILYATSMEDEGVK---FLKICEAKLGFKLAKCRGRVKEFIYYLWVKNKIYVLEND 205
           YVY ++L     EDEG +   F   C  K    + +CR RVK F+  +W+KNK     N 
Sbjct: 136 YVYCMLLMCG--EDEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNK----PNG 195

Query: 206 SSNRRGCESVIKNCCRKNVRRIGCDWNDEDDYYGEHTCEACKWNGEVLRFCNM 254
            S+  G  +    C  +  +++   W+  +D  G  +C+ C  + E+  FCNM
Sbjct: 196 KSSFCGSGT----CDSERQKQLSKRWSSFEDKDGGISCQRCGADHELGFFCNM 238

[Close]

BLAST of CmoCh04G013780 vs. TAIR10
Match: AT1G74875.1 (AT1G74875.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-17
Identity = 66/229 (28.82%), Postives = 107/229 (46.72%), Query Frame = 1


Query: 37  NDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLLWNNSKEFWS 96
           N   I ++  V +SS ++  + +L +K F   S+  YI Q  SL     L W N K+F +
Sbjct: 17  NMFQIHLVINVLSSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHN 76

Query: 97  FMEKCNNNGNPETLYRKGMLEFF---THCREAS-GMAYLKLSAQKGYPDACYVYGIILYA 156
           F ++C  +GN E +YRKG++++F   +H R+   G+ ++  +A  G  +A YVYG+IL  
Sbjct: 77  FFKRCRKSGNLEAIYRKGLVDYFHRDSHERQRDRGLKHIAKTANNGNQEAQYVYGLILIC 136

Query: 157 T--SMEDEGVKFLKICEAKLGF-----KLAKCRGRVKEFIYY----LWVKNKIYVLENDS 216
                +  G K L      L       ++ K R  ++   ++    +    K YV EN  
Sbjct: 137 LGGKTKQNGFKILSSLRKPLMLSNTIKEMEKHRTHIRNMWWWGEPMMRHLQKSYVREN-- 196

Query: 217 SNRRGCESVIKNCCRKNVRRIGCDWNDEDDYYGEHTCEACKWNGEVLRF 251
            N  G   +  N C ++  R G    ++DD      CE C  + EV  F
Sbjct: 197 CNCDGRTEIFPNYCFRH--RFG----EDDDMLTSSACEICLCHHEVKLF 237

[Close]

BLAST of CmoCh04G013780 vs. TAIR10
Match: AT1G67623.1 (AT1G67623.1 F-box family protein)

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-16
Identity = 47/140 (33.57%), Postives = 79/140 (56.43%), Query Frame = 1


Query: 11  ALRSQISGTIKMARFSASPPPIESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASS 70
           +L    S +I+ ++  AS   ++SLP DLL+E+ +   ASS + + + +L +K F     
Sbjct: 4   SLSLHASSSIRKSKTKASLC-LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICD 63

Query: 71  HNYIFQHASLENFHKLLWNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREASGMAY 130
             Y+F   SL+    L W+ +     F+E+C  + NPE L++KG + +F    +  G+ Y
Sbjct: 64  EKYVFYRLSLKEIEFLPWHENSA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEY 123

Query: 131 LKLSAQKGYPDACYVYGIIL 151
           L  +A+KG  +A YVYG+IL
Sbjct: 124 LAEAAEKGIKEAKYVYGVIL 140

[Close]

BLAST of CmoCh04G013780 vs. TAIR10
Match: AT2G35280.1 (AT2G35280.1 F-box family protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-07
Identity = 37/138 (26.81%), Postives = 69/138 (50.00%), Query Frame = 1


Query: 32  IESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLLWNNS 91
           +E+LP DLL E++AK+   S  D  +  L+ K+   +++   + +  +L    K   +  
Sbjct: 11  LEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPLSCR 70

Query: 92  KEFWSFMEKCNNNGNPETLYRKGMLEFFT--HCREASGMAYLKLSAQKGYPDACYVYGII 151
           K     M+KC  N NP+  Y KG++ +F   HC     + ++ ++A  G  +A Y+Y ++
Sbjct: 71  KHLL-IMKKCLANNNPDAHYIKGIIWYFNLDHC--DVDLHHIGIAANGGQKEAIYMYAML 130

Query: 152 LYATSMEDEGVKFLKICE 168
           L      +EG  ++   E
Sbjct: 131 LLCRGRTEEGKTYMSQLE 145

[Close]

BLAST of CmoCh04G013780 vs. NCBI nr
Match: gi|449439561|ref|XP_004137554.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 6.1e-87
Identity = 165/256 (64.45%), Postives = 196/256 (76.56%), Query Frame = 1


Query: 6   KRKSQALRSQISGTIKMARFSA-SPPPIESLPNDLLIEVLAKVAASSFTDLVHAKLATKK 65
           KR S AL +QIS   +  +    SP  I+SLPNDLL EVLAKVA SS+ DL+ AKLATK 
Sbjct: 7   KRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKH 66

Query: 66  FLEASSHNYIFQHASLENFHKLLWNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCRE 125
           FLEAS+  YIFQH SL NF  LLWNNS +FWSFME CNN+ NPE+LYRKGMLEFFTHC+E
Sbjct: 67  FLEASNDRYIFQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKE 126

Query: 126 ASGMAYLKLSAQKGYPDACYVYGIILYATSMEDEGVKFLKICEAKLGFKLAKCRGRVKEF 185
           ASGMAYLK SAQKGY DACYV+G+ILYA++++DEG++FLK  E KLG K+ +CR RVKEF
Sbjct: 127 ASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEF 186

Query: 186 IYYLWVKNKIYVLENDSSNRRGCESVIKNCCRKNVRRIGCDWNDEDDYYGEHTCEACKWN 245
           + Y+W+KNKI + E DSS  R C+  I   CR N +    D  DEDDYYG++TCE CKWN
Sbjct: 187 VSYIWIKNKISLSEGDSSYGRKCDKNIN--CRVNEKINVWDSKDEDDYYGKYTCEECKWN 246

Query: 246 GEVLRFCNMLRTGSYN 261
            EVLRFC MLRTG ++
Sbjct: 247 NEVLRFCKMLRTGRFS 260

[Close]

BLAST of CmoCh04G013780 vs. NCBI nr
Match: gi|659107472|ref|XP_008453691.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 2.3e-86
Identity = 168/261 (64.37%), Postives = 192/261 (73.56%), Query Frame = 1


Query: 1   MAGSLKRKSQALRSQISGTIKMARFSA-SPPPIESLPNDLLIEVLAKVAASSFTDLVHAK 60
           MA   K KS    + IS T +  R    SP  I+SLPNDLL EVLAKVAASS+ DLV AK
Sbjct: 1   MANHPKTKSLPFHTLISRTTQKNRTGVLSPTVIKSLPNDLLTEVLAKVAASSYVDLVQAK 60

Query: 61  LATKKFLEASSHNYIFQHASLENFHKLLWNNSKEFWSFMEKCNNNGNPETLYRKGMLEFF 120
           LATK+FLEAS   YIFQH SL NF   LWNNS EFWSF+E CNNN NPE+LYRKGMLEFF
Sbjct: 61  LATKQFLEASKDRYIFQHVSLGNFENHLWNNSPEFWSFIETCNNNENPESLYRKGMLEFF 120

Query: 121 THCREASGMAYLKLSAQKGYPDACYVYGIILYATSMEDEGVKFLKICEAKLGFKLAKCRG 180
           THC+EASG+AYLKLSAQKGY DACYV  +ILYA+  +DEG +FLK  EAKL  K+A+CR 
Sbjct: 121 THCKEASGLAYLKLSAQKGYVDACYVCSVILYASKAKDEGFEFLKNHEAKLRNKMAECRW 180

Query: 181 RVKEFIYYLWVKNKIYVLENDSSNRRGCESVIKNCCRKNVRRIGCDWNDEDDYYGEHTCE 240
           RVK F+ YLW+KN+I     D ++R+ C+  I   CR N RR   DW DEDDYYGE+TCE
Sbjct: 181 RVKRFVSYLWIKNRISSSGEDPNDRK-CDKNIN--CRVNERRNSWDWKDEDDYYGEYTCE 240

Query: 241 ACKWNGEVLRFCNMLRTGSYN 261
            CKWN EV RFC MLRTG Y+
Sbjct: 241 KCKWNNEVFRFCKMLRTGRYS 258

[Close]

BLAST of CmoCh04G013780 vs. NCBI nr
Match: gi|449435498|ref|XP_004135532.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 5.3e-83
Identity = 167/265 (63.02%), Postives = 202/265 (76.23%), Query Frame = 1


Query: 1   MAGSLKRKSQ-ALRSQISG-TIKMAR-FSASPPPIESLPNDLLIEVLAKVAASSFTDLVH 60
           MA  LKRKS+ +  SQIS  T KM R FS+S   I SLPNDLLIEVLAKVAASS+ DLV 
Sbjct: 1   MANQLKRKSEPSFNSQISTRTKKMCRPFSSSL--IVSLPNDLLIEVLAKVAASSYIDLVQ 60

Query: 61  AKLATKKFLEASSHNYIFQHASLEN--FHKLLWNNSKEFWSFMEKCNNNGNPETLYRKGM 120
           AKLATK FL AS+  YIFQH SLEN  F  LLWNN+ +  SFME  NNN NPE+LYRKG 
Sbjct: 61  AKLATKLFLHASNDGYIFQHVSLENKSFRNLLWNNTPQSRSFMETLNNNENPESLYRKGT 120

Query: 121 LEFFTHCREASGMAYLKLSAQKGYPDACYVYGIILYATSMEDEGVKFLKICEAKLGFKLA 180
           +EFF+H +EASG++YLK SAQKGY DACYVYG+++YA ++++EGV++LK+CEAKLG K+A
Sbjct: 121 MEFFSHGKEASGLSYLKQSAQKGYVDACYVYGVVMYAANLKEEGVEYLKMCEAKLGNKMA 180

Query: 181 KCRGRVKEFIYYLWVKNKIYVLENDSSNRRGCESVIKNCCRKNVRRIGCDWNDEDDYYGE 240
           +CR RVKEF++Y W+KN+I      S ++  C +V    C+ N R  G DW DEDDYYGE
Sbjct: 181 ECRRRVKEFVWYFWIKNRI------SMSKEICSNV---NCKVNERSNGWDWKDEDDYYGE 240

Query: 241 HTCEACKWNGEVLRFCNMLRTGSYN 261
           HTCE CKW+ EVLRFCNMLR G Y+
Sbjct: 241 HTCEQCKWSNEVLRFCNMLRRGGYS 254

[Close]

BLAST of CmoCh04G013780 vs. NCBI nr
Match: gi|731376767|ref|XP_010656578.1| (PREDICTED: putative F-box protein At1g67623 [Vitis vinifera])

HSP 1 Score: 157.1 bits (396), Expect = 4.1e-35
Identity = 96/239 (40.17%), Postives = 133/239 (55.65%), Query Frame = 1


Query: 32  IESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLLWNNS 91
           IE LP+DLLIEVL +VA SSFTDL +AKL+ + FLEAS   +I ++ S+E F  + W   
Sbjct: 15  IEYLPSDLLIEVLTRVATSSFTDLFNAKLSCRNFLEASDDKFIMKNISIEKFPAIPWWQV 74

Query: 92  K-EFWSFMEKCNNNGNPETLYRKGMLEFFTHCREASGMAYLKLSAQKGYPDACYVYGIIL 151
           K E  SF++ C  +GNPE LYR+GM+EFF+  +  SG  YLK + +  + +A YVYGIIL
Sbjct: 75  KDEVSSFLKACKESGNPEALYRQGMMEFFSWKKVESGEEYLKRALEMEHMEASYVYGIIL 134

Query: 152 Y---ATSMEDEGVKFLKICEAKLGFKLAKCRGRVKEFIYYLWVKNKIYVLENDSSNRRGC 211
                 S E++G+K L     K   KL +CR + K FI  +W++N I   +   ++    
Sbjct: 135 LCKGGESNEEQGMKLLN--AVKKSRKLGECRKKTKAFILSMWIRNPIVKCQELVNHH--- 194

Query: 212 ESVIKNCCRKNVRRIG-----CDW------NDEDDYYGEHTCEACKWNGEVLRFCNMLR 256
               K C R+N   IG       W      N++ D    + CE C W  EV  FC + R
Sbjct: 195 ---AKTCGRRNNGGIGGKRGWWQWIDDREDNEDKDVEEVNYCEGCMWEDEVSLFCKLFR 245

[Close]

BLAST of CmoCh04G013780 vs. NCBI nr
Match: gi|147773103|emb|CAN71689.1| (hypothetical protein VITISV_039291 [Vitis vinifera])

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 97/235 (41.28%), Postives = 135/235 (57.45%), Query Frame = 1


Query: 32  IESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFLEASSHNYIFQHASLENFHKLLWNNS 91
           IESL +DLLIEVL +VA+SSFTDL +AKL+ + FLEAS   ++ ++ S+E F  + W   
Sbjct: 15  IESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISIEKFPTIPWWQV 74

Query: 92  K-EFWSFMEKCNNNGNPETLYRKGMLEFFTHCREASGMAYLKLSAQKGYPDACYVYGIIL 151
           K E  SF++ C  +GNPE LYR+GM+EFF+  +  S   YLK + + G+ +A YVYGIIL
Sbjct: 75  KDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVYGIIL 134

Query: 152 Y---ATSMEDEGVKFLKICEAKLGFKLAKCRGRVKEFIYYLWVKNKIYVLENDSSNRRGC 211
                 S E++G+K L     K   KL +CR R + F   +W++N I   +  +S     
Sbjct: 135 LCKGGDSNEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPIVKCQELTSYH--- 194

Query: 212 ESVIKNCCRKNVRRI----GCDW--NDED-DYYGEHTCEACKWNGEVLRFCNMLR 256
                 C R+N   I    G  W  +DED D    + CEAC W+ EV  FC + R
Sbjct: 195 ---ANTCGRRNNGGIGGKRGWPWIEDDEDKDVEEVNYCEACIWDDEVSLFCKLFR 241

The following BLAST results are available for this feature:

BLAST of CmoCh04G013780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB79_ARATH	3.6e-15	33.57	Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1	[more]
FB127_ARATH	2.4e-06	26.81	F-box protein At2g35280 OS=Arabidopsis thaliana GN=At2g35280 PE=2 SV=1	[more]

BLAST of CmoCh04G013780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS96_CUCSA	4.2e-87	64.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1	[more]
A5AV49_VITVI	8.4e-35	41.28	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1	[more]
B9I6Z5_POPTR	1.9e-34	37.50	F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1	[more]
A0A0B2P0Z6_GLYSO	6.2e-30	36.91	Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1	[more]
I1KMZ2_SOYBN	6.2e-30	36.91	Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2	[more]

BLAST of CmoCh04G013780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G74875.1	4.1e-17	28.82	FUNCTIONS IN: molecular_function unknown	[more]
AT1G67623.1	2.1e-16	33.57	F-box family protein	[more]
AT2G35280.1	1.3e-07	26.81	F-box family protein	[more]

BLAST of CmoCh04G013780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439561\|ref\|XP_004137554.1\|	6.1e-87	64.45	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|659107472\|ref\|XP_008453691.1\|	2.3e-86	64.37	PREDICTED: putative F-box protein At1g67623 [Cucumis melo]	[more]
gi\|449435498\|ref\|XP_004135532.1\|	5.3e-83	63.02	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|731376767\|ref\|XP_010656578.1\|	4.1e-35	40.17	PREDICTED: putative F-box protein At1g67623 [Vitis vinifera]	[more]
gi\|147773103\|emb\|CAN71689.1\|	1.2e-34	41.28	hypothetical protein VITISV_039291 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013780.1	CmoCh04G013780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 99..162 score: 9.
None	No IPR available	PANTHER	PTHR33784	FAMILY NOT NAMED	coord: 17..259 score: 5.5
None	No IPR available	PANTHER	PTHR33784:SF4	SUBFAMILY NOT NAMED	coord: 17..259 score: 5.5
None	No IPR available	unknown	SSF81901	HCP-like	coord: 61..165 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G013780	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G013780	Cucurbita moschata (Rifu)	cmocmoB343
CmoCh04G013780	Cucumber (Gy14) v1	cgycmoB0124
CmoCh04G013780	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G013780	Cucurbita maxima (Rimu)	cmacmoB425
CmoCh04G013780	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G013780	Wild cucumber (PI 183967)	cmocpiB725
CmoCh04G013780	Cucumber (Chinese Long) v2	cmocuB717
CmoCh04G013780	Melon (DHL92) v3.5.1	cmomeB644
CmoCh04G013780	Watermelon (Charleston Gray)	cmowcgB624
CmoCh04G013780	Watermelon (97103) v1	cmowmB724
CmoCh04G013780	Cucurbita pepo (Zucchini)	cmocpeB648
CmoCh04G013780	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G013780	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G013780	Bottle gourd (USVL1VR-Ls)	cmolsiB669
CmoCh04G013780	Cucumber (Gy14) v2	cgybcmoB628
CmoCh04G013780	Melon (DHL92) v3.6.1	cmomedB734
CmoCh04G013780	Silver-seed gourd	carcmoB0986
CmoCh04G013780	Silver-seed gourd	carcmoB0987
CmoCh04G013780	Silver-seed gourd	carcmoB1138
CmoCh04G013780	Cucumber (Chinese Long) v3	cmocucB0849
CmoCh04G013780	Watermelon (97103) v2	cmowmbB698
CmoCh04G013780	Wax gourd	cmowgoB0891