CmoCh04G013750 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G013750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	F-box family protein
Location	Cmo_Chr04 : 7016028 .. 7016994 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGTTCCTTGAAACGAAAATCTCAAGCTCTTGACTCTCAAATTTCACGGTACGTTAACTTAATTTTTGCATGCATGTTTTTTTTATTAATAAAAATTATTTGATTATTTTTCGTCAATGAGTTTTGAATAATAAATTTATTACGGCGGTTGTGACATGTTTTTGCCAATTTGGTGGCGGTTCGAGCTCTTCTTTAAGTTTGTTTCCCTCTAATTTATGATGTGTAGGATAACCAAGATGGCGCGTTTCAGTGATTTCCCACCAACCATAGAATCACTCCCAAACGATTTATTGATCGAAGTTCTGGCAAAAGTGGCCGCTTTTTCATTCACGGATTTAGTCCAAGCCAAATTAGCCACCAAGGAATTTCTCGAAGCATCAAGTCATGGCTACATATTCCAGCACGCGTCCCTTAGAAACTTTCAAAAACTTCTATGGAACAACAACCCAGAGTTTTGGTCGTTCATGGAAAAATGCAACAACAACGGAAATCCAGAGACTCTATACCAGAAGGGAATGTTGGAATTCTTCACCTATTGTAGAGAAGCTTCTGGAATGGCATATTTAAAGCTTTCTGCCCAAAAAGGCTACTCGGAAGCTTGTTACGTATATGGCATCATTTTGTACACAGCGAGTTCGGAGGATGAGGGAGTGAAATTCTTGAAGATTTGTGAGGCAAAATTAGGGTTTAAATTGGCTGAATGTCGTCGGAGAGTTAAAGAACTTGTTCGTTATCTTTGGGTTAAGAACAAAATTTCTTTGTCGAAAAAGGATTCCAGTGATCAGAGGGGCTGTGAGAGTGTGGTTAAGAATTGTTGTAAGAAGAACGTGAGAAGAATTGGATGGGATGGGAACGATGAGGATGATTATTATGGAGAACACACGTGTGAAGCGTGTAAATGGAATGAAGAAGTTTCGAGATTTTGTAATATGCTTAGAACAGGGAGTTATGATATGTTGTAG

mRNA sequence

ATGGCCGGTTCCTTGAAACGAAAATCTCAAGCTCTTGACTCTCAAATTTCACGGTACGTTAACTTAATTTTTGCATGCATGATAACCAAGATGGCGCGTTTCAGTGATTTCCCACCAACCATAGAATCACTCCCAAACGATTTATTGATCGAAGTTCTGGCAAAAGTGGCCGCTTTTTCATTCACGGATTTAGTCCAAGCCAAATTAGCCACCAAGGAATTTCTCGAAGCATCAAGTCATGGCTACATATTCCAGCACGCGTCCCTTAGAAACTTTCAAAAACTTCTATGGAACAACAACCCAGAGTTTTGGTCGTTCATGGAAAAATGCAACAACAACGGAAATCCAGAGACTCTATACCAGAAGGGAATGTTGGAATTCTTCACCTATTGTAGAGAAGCTTCTGGAATGGCATATTTAAAGCTTTCTGCCCAAAAAGGCTACTCGGAAGCTTGTTACGTATATGGCATCATTTTGTACACAGCGAGTTCGGAGGATGAGGGAGTGAAATTCTTGAAGATTTGTGAGGCAAAATTAGGGTTTAAATTGGCTGAATGTCGTCGGAGAGTTAAAGAACTTGTTCGTTATCTTTGGGTTAAGAACAAAATTTCTTTGTCGAAAAAGGATTCCAGTGATCAGAGGGGCTGTGAGAGTGTGGTTAAGAATTGTTGTAAGAAGAACGTGAGAAGAATTGGATGGGATGGGAACGATGAGGATGATTATTATGGAGAACACACGTGTGAAGCGTGTAAATGGAATGAAGAAGTTTCGAGATTTTGTAATATGCTTAGAACAGGGAGTTATGATATGTTGTAG

Coding sequence (CDS)

ATGGCCGGTTCCTTGAAACGAAAATCTCAAGCTCTTGACTCTCAAATTTCACGGTACGTTAACTTAATTTTTGCATGCATGATAACCAAGATGGCGCGTTTCAGTGATTTCCCACCAACCATAGAATCACTCCCAAACGATTTATTGATCGAAGTTCTGGCAAAAGTGGCCGCTTTTTCATTCACGGATTTAGTCCAAGCCAAATTAGCCACCAAGGAATTTCTCGAAGCATCAAGTCATGGCTACATATTCCAGCACGCGTCCCTTAGAAACTTTCAAAAACTTCTATGGAACAACAACCCAGAGTTTTGGTCGTTCATGGAAAAATGCAACAACAACGGAAATCCAGAGACTCTATACCAGAAGGGAATGTTGGAATTCTTCACCTATTGTAGAGAAGCTTCTGGAATGGCATATTTAAAGCTTTCTGCCCAAAAAGGCTACTCGGAAGCTTGTTACGTATATGGCATCATTTTGTACACAGCGAGTTCGGAGGATGAGGGAGTGAAATTCTTGAAGATTTGTGAGGCAAAATTAGGGTTTAAATTGGCTGAATGTCGTCGGAGAGTTAAAGAACTTGTTCGTTATCTTTGGGTTAAGAACAAAATTTCTTTGTCGAAAAAGGATTCCAGTGATCAGAGGGGCTGTGAGAGTGTGGTTAAGAATTGTTGTAAGAAGAACGTGAGAAGAATTGGATGGGATGGGAACGATGAGGATGATTATTATGGAGAACACACGTGTGAAGCGTGTAAATGGAATGAAGAAGTTTCGAGATTTTGTAATATGCTTAGAACAGGGAGTTATGATATGTTGTAG

Homology

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BLAST of CmoCh04G013750 vs. Swiss-Prot
Match: FB79_ARATH (Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-16
Identity = 63/216 (29.17%), Postives = 102/216 (47.22%), Query Frame = 1


Query: 41  IESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHASLRNFQKLLWNNN 100
           ++SLP DLL+E+ +   A S + +   +L +K F       Y+F   SL+  + L W+ N
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHEN 83

Query: 101 PEFWSFMEKCNNNGNPETLYQKGMLEFFTYCREASGMAYLKLSAQKGYSEACYVYGIILY 160
                F+E+C  + NPE L+QKG + +F    +  G+ YL  +A+KG  EA YVYG+IL 
Sbjct: 84  SA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVILI 143

Query: 161 T--ASSEDEGVKFLKICEAKLGF----KLAECRRRVKEL-VRYLWVKNKISLSKKDSSDQ 220
                ++ +G + L     +L      +L E R +++++   + W  N +    K +   
Sbjct: 144 CLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVVEQLKTAYVS 203

Query: 221 RGCESVVKNCCKKNVRRIGWD-GNDEDDYYGEHTCE 249
             C+   K      V   GW    DE D      CE
Sbjct: 204 EKCKCDCKTRMLLLVMNRGWYLFGDETDLDFSSACE 237

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BLAST of CmoCh04G013750 vs. Swiss-Prot
Match: FB127_ARATH (F-box protein At2g35280 OS=Arabidopsis thaliana GN=At2g35280 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-06
Identity = 36/136 (26.47%), Postives = 65/136 (47.79%), Query Frame = 1


Query: 41  IESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHASLRNFQKLLWNNN 100
           +E+LP DLL E++AK+   S  D     L+ KE   +++   + +  +L    K   +  
Sbjct: 11  LEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPLSCR 70

Query: 101 PEFWSFMEKCNNNGNPETLYQKGMLEFFTYCREASGMAYLKLSAQKGYSEACYVYGIILY 160
                 M+KC  N NP+  Y KG++ +F        + ++ ++A  G  EA Y+Y ++L 
Sbjct: 71  KHLL-IMKKCLANNNPDAHYIKGIIWYFNLDHCDVDLHHIGIAANGGQKEAIYMYAMLLL 130

Query: 161 TASSEDEGVKFLKICE 177
                +EG  ++   E
Sbjct: 131 CRGRTEEGKTYMSQLE 145

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BLAST of CmoCh04G013750 vs. TrEMBL
Match: A0A0A0LS96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 8.7e-88
Identity = 166/264 (62.88%), Postives = 201/264 (76.14%), Query Frame = 1


Query: 6   KRKSQALDSQISRYVNLIFACMITKMARFSDFPPT-IESLPNDLLIEVLAKVAAFSFTDL 65
           KR S ALD+QISR         IT+  +     PT I+SLPNDLL EVLAKVA  S+ DL
Sbjct: 7   KRDSVALDTQISR---------ITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDL 66

Query: 66  VQAKLATKEFLEASSHGYIFQHASLRNFQKLLWNNNPEFWSFMEKCNNNGNPETLYQKGM 125
           +QAKLATK FLEAS+  YIFQH SL NF+ LLWNN+P+FWSFME CNN+ NPE+LY+KGM
Sbjct: 67  IQAKLATKHFLEASNDRYIFQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGM 126

Query: 126 LEFFTYCREASGMAYLKLSAQKGYSEACYVYGIILYTASSEDEGVKFLKICEAKLGFKLA 185
           LEFFT+C+EASGMAYLK SAQKGY +ACYV+G+ILY ++ +DEG++FLK  E KLG K+ 
Sbjct: 127 LEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMI 186

Query: 186 ECRRRVKELVRYLWVKNKISLSKKDSSDQRGCESVVKNCCKKNVRRIGWDGNDEDDYYGE 245
           ECR+RVKE V Y+W+KNKISLS+ DSS  R C+  +   C+ N +   WD  DEDDYYG+
Sbjct: 187 ECRQRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNIN--CRVNEKINVWDSKDEDDYYGK 246

Query: 246 HTCEACKWNEEVSRFCNMLRTGSY 269
           +TCE CKWN EV RFC MLRTG +
Sbjct: 247 YTCEECKWNNEVLRFCKMLRTGRF 259

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BLAST of CmoCh04G013750 vs. TrEMBL
Match: A5AV49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.0e-36
Identity = 96/246 (39.02%), Postives = 141/246 (57.32%), Query Frame = 1


Query: 30  KMARFSDFPPTIESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHASL 89
           K  + + +  TIESL +DLLIEVL +VA+ SFTDL  AKL+ + FLEAS   ++ ++ S+
Sbjct: 4   KKTKRNSYGSTIESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISI 63

Query: 90  RNFQKL-LWNNNPEFWSFMEKCNNNGNPETLYQKGMLEFFTYCREASGMAYLKLSAQKGY 149
             F  +  W    E  SF++ C  +GNPE LY++GM+EFF++ +  S   YLK + + G+
Sbjct: 64  EKFPTIPWWQVKDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGH 123

Query: 150 SEACYVYGIILYTA---SSEDEGVKFLKICEAKLGFKLAECRRRVKELVRYLWVKNKISL 209
            EA YVYGIIL      S+E++G+K L     K   KL ECR+R +     +W++N I  
Sbjct: 124 MEASYVYGIILLCKGGDSNEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPIVK 183

Query: 210 SKKDSSDQRGCESVVKNCCKKNVRRIG------WDGNDED-DYYGEHTCEACKWNEEVSR 265
            ++ +S           C ++N   IG      W  +DED D    + CEAC W++EVS 
Sbjct: 184 CQELTSYH------ANTCGRRNNGGIGGKRGWPWIEDDEDKDVEEVNYCEACIWDDEVSL 241

[Close]

BLAST of CmoCh04G013750 vs. TrEMBL
Match: B9I6Z5_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 89/247 (36.03%), Postives = 139/247 (56.28%), Query Frame = 1


Query: 28  ITKMARFSDFPPTIESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHA 87
           +TK  R +      +  P DLL EVLA+VA+ S +DL  AKL+ KEFLEA+S  YIF+H 
Sbjct: 1   MTKGRRKTSRHEFFKYFPKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHI 60

Query: 88  SLRNFQKLLWNNNPEFWSFMEKCNNNGNPETLYQKGMLEFFTYCREASGMAYLKLSAQKG 147
           ++     + W  +    SF+ +C  NGNPE L+++GM+EFF+  +  SG  +LK +A+KG
Sbjct: 61  TIEKLPVIPWRISHGASSFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAARKG 120

Query: 148 YSEACYVYGIIL--YTASSEDEGVKFLKICE--AKLGFKLAECRRRVKELVRYLWVKNKI 207
           + EA Y  G+IL  +    + EG++ L   +        + ECR ++KE+++ +W+  + 
Sbjct: 121 HVEAIYTCGVILVCHGGQFKQEGIELLSSLKNYKSRHRTIKECRDKIKEILQSMWIDRRE 180

Query: 208 S--LSKKDSSDQRGCESVVKNCCKKNVRRIGWDGNDEDDYYGEHTCEACKWNEEVSRFCN 267
           +    ++  S  R C     NC K N R  GW   DE++Y    TC+ C W+ E + FC 
Sbjct: 181 AGIGPEEPKSHGRTC-----NCSKFNKR--GW--IDEEEY---TTCDYCVWDHEATLFCK 235

Query: 268 MLRTGSY 269
           +LR   +
Sbjct: 241 ILRARGF 235

[Close]

BLAST of CmoCh04G013750 vs. TrEMBL
Match: A0A061G0Z9_THECC (F-box family protein, putative OS=Theobroma cacao GN=TCM_014925 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 83/232 (35.78%), Postives = 127/232 (54.74%), Query Frame = 1


Query: 39  PTIESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHASLRNFQKLLWN 98
           P I SLPN+L+ EVLA+VAA+SF D    KL+ K F + +   YI QH SL  F    W 
Sbjct: 77  PNIFSLPNELMTEVLARVAAYSFHDFFDVKLSCKVFHQIADDKYILQHVSLEKFPVTPWC 136

Query: 99  NNPEFWSFMEKCNNNGNPETLYQKGMLEFFTYCREASGMAYLKLSAQKGYSEACYVYGII 158
           +  + + F+EKC  +G+PE LY++G++E F++ R   G+  L  +A+ G+  A YV G+I
Sbjct: 137 STKQSF-FLEKCKRSGHPEALYREGVVEHFSFARVEEGLNCLNSAAKVGHLGASYVLGVI 196

Query: 159 LYTA---SSEDEGVKFLKICEAKLGFKLAECRRRVKELVRYLWVKNKISLSKKDSSDQRG 218
           L        E +G + LK+ ++K G +  E R+++ + +R +W+ N +            
Sbjct: 197 LLCTEEPDQEQDGRRLLKLEKSKKGVR--ESRKKLNDTIRNIWLNNLLEGK--------- 256

Query: 219 CESVVKNCC---KKNVRRIGWDGNDEDDYYGEHTCEACKWNEEVSRFCNMLR 265
                 NCC    ++ RR GW  ++EDD      CEAC  + EV   CN+LR
Sbjct: 257 -----PNCCPMRDQHRRRRGWPSDNEDDV----DCEACGCDLEVIFVCNLLR 287

[Close]

BLAST of CmoCh04G013750 vs. TrEMBL
Match: A0A0B2P0Z6_GLYSO (Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.5e-28
Identity = 84/228 (36.84%), Postives = 123/228 (53.95%), Query Frame = 1


Query: 40  TIESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHASLRNFQ--KLLW 99
           TI+SLP +L +E+ AKVA  S  D    KL  KEFL A+   Y+++HAS+ NF    L W
Sbjct: 21  TIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASMENFALVPLPW 80

Query: 100 NNNPEFWSFMEKCNNNGNPETLYQKGMLEFFTYCREASGMAYLKLSAQKGYSEACYVYGI 159
               +  SF+++C  +GN E LY++GML++FT  R   G+  LK +A +G+ +A YVY +
Sbjct: 81  FTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAKYVYCM 140

Query: 160 ILYTASSEDEGVK---FLKICEAKLGFKLAECRRRVKELVRYLWVKNKISLSKKDSSDQR 219
           +L     EDEG +   F   C  K    +  CR+RVK  VR +W+KNK +  K       
Sbjct: 141 LL--MCGEDEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNKPN-GKSSFCGSG 200

Query: 220 GCESVVKNCCKKNVRRIGWDGNDEDDYYGEHTCEACKWNEEVSRFCNM 263
            C+S  +    K      W   ++ D  G  +C+ C  + E+  FCNM
Sbjct: 201 TCDSERQKQLSKR-----WSSFEDKD--GGISCQRCGADHELGFFCNM 238

[Close]

BLAST of CmoCh04G013750 vs. TAIR10
Match: AT1G67623.1 (AT1G67623.1 F-box family protein)

HSP 1 Score: 88.6 bits (218), Expect = 6.5e-18
Identity = 63/216 (29.17%), Postives = 102/216 (47.22%), Query Frame = 1


Query: 41  IESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHASLRNFQKLLWNNN 100
           ++SLP DLL+E+ +   A S + +   +L +K F       Y+F   SL+  + L W+ N
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHEN 83

Query: 101 PEFWSFMEKCNNNGNPETLYQKGMLEFFTYCREASGMAYLKLSAQKGYSEACYVYGIILY 160
                F+E+C  + NPE L+QKG + +F    +  G+ YL  +A+KG  EA YVYG+IL 
Sbjct: 84  SA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVILI 143

Query: 161 T--ASSEDEGVKFLKICEAKLGF----KLAECRRRVKEL-VRYLWVKNKISLSKKDSSDQ 220
                ++ +G + L     +L      +L E R +++++   + W  N +    K +   
Sbjct: 144 CLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVVEQLKTAYVS 203

Query: 221 RGCESVVKNCCKKNVRRIGWD-GNDEDDYYGEHTCE 249
             C+   K      V   GW    DE D      CE
Sbjct: 204 EKCKCDCKTRMLLLVMNRGWYLFGDETDLDFSSACE 237

[Close]

BLAST of CmoCh04G013750 vs. TAIR10
Match: AT1G74875.1 (AT1G74875.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 75.1 bits (183), Expect = 7.4e-14
Identity = 58/227 (25.55%), Postives = 99/227 (43.61%), Query Frame = 1


Query: 46  NDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHASLRNFQKLLWNNNPEFWS 105
           N   I ++  V + S ++    +L +K F   S+  YI Q  SL     L W N  +F +
Sbjct: 17  NMFQIHLVINVLSSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHN 76

Query: 106 FMEKCNNNGNPETLYQKGMLEFF---TYCREAS-GMAYLKLSAQKGYSEACYVYGIILYT 165
           F ++C  +GN E +Y+KG++++F   ++ R+   G+ ++  +A  G  EA YVYG+IL  
Sbjct: 77  FFKRCRKSGNLEAIYRKGLVDYFHRDSHERQRDRGLKHIAKTANNGNQEAQYVYGLILIC 136

Query: 166 --ASSEDEGVKFLKICEAKLGFK--LAECRRRVKELVRYLWVKNKISLSKKDSSDQRGCE 225
               ++  G K L      L     + E  +    +    W    +    + S  +  C 
Sbjct: 137 LGGKTKQNGFKILSSLRKPLMLSNTIKEMEKHRTHIRNMWWWGEPMMRHLQKSYVRENCN 196

Query: 226 -----SVVKNCCKKNVRRIGWDGNDEDDYYGEHTCEACKWNEEVSRF 260
                 +  N C ++  R G    ++DD      CE C  + EV  F
Sbjct: 197 CDGRTEIFPNYCFRH--RFG----EDDDMLTSSACEICLCHHEVKLF 237

[Close]

BLAST of CmoCh04G013750 vs. TAIR10
Match: AT2G35280.1 (AT2G35280.1 F-box family protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-07
Identity = 36/136 (26.47%), Postives = 65/136 (47.79%), Query Frame = 1


Query: 41  IESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHASLRNFQKLLWNNN 100
           +E+LP DLL E++AK+   S  D     L+ KE   +++   + +  +L    K   +  
Sbjct: 11  LEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPLSCR 70

Query: 101 PEFWSFMEKCNNNGNPETLYQKGMLEFFTYCREASGMAYLKLSAQKGYSEACYVYGIILY 160
                 M+KC  N NP+  Y KG++ +F        + ++ ++A  G  EA Y+Y ++L 
Sbjct: 71  KHLL-IMKKCLANNNPDAHYIKGIIWYFNLDHCDVDLHHIGIAANGGQKEAIYMYAMLLL 130

Query: 161 TASSEDEGVKFLKICE 177
                +EG  ++   E
Sbjct: 131 CRGRTEEGKTYMSQLE 145

[Close]

BLAST of CmoCh04G013750 vs. NCBI nr
Match: gi|449439561|ref|XP_004137554.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 1.2e-87
Identity = 166/264 (62.88%), Postives = 201/264 (76.14%), Query Frame = 1


Query: 6   KRKSQALDSQISRYVNLIFACMITKMARFSDFPPT-IESLPNDLLIEVLAKVAAFSFTDL 65
           KR S ALD+QISR         IT+  +     PT I+SLPNDLL EVLAKVA  S+ DL
Sbjct: 7   KRDSVALDTQISR---------ITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDL 66

Query: 66  VQAKLATKEFLEASSHGYIFQHASLRNFQKLLWNNNPEFWSFMEKCNNNGNPETLYQKGM 125
           +QAKLATK FLEAS+  YIFQH SL NF+ LLWNN+P+FWSFME CNN+ NPE+LY+KGM
Sbjct: 67  IQAKLATKHFLEASNDRYIFQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGM 126

Query: 126 LEFFTYCREASGMAYLKLSAQKGYSEACYVYGIILYTASSEDEGVKFLKICEAKLGFKLA 185
           LEFFT+C+EASGMAYLK SAQKGY +ACYV+G+ILY ++ +DEG++FLK  E KLG K+ 
Sbjct: 127 LEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMI 186

Query: 186 ECRRRVKELVRYLWVKNKISLSKKDSSDQRGCESVVKNCCKKNVRRIGWDGNDEDDYYGE 245
           ECR+RVKE V Y+W+KNKISLS+ DSS  R C+  +   C+ N +   WD  DEDDYYG+
Sbjct: 187 ECRQRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNIN--CRVNEKINVWDSKDEDDYYGK 246

Query: 246 HTCEACKWNEEVSRFCNMLRTGSY 269
           +TCE CKWN EV RFC MLRTG +
Sbjct: 247 YTCEECKWNNEVLRFCKMLRTGRF 259

[Close]

BLAST of CmoCh04G013750 vs. NCBI nr
Match: gi|659107472|ref|XP_008453691.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis melo])

HSP 1 Score: 321.2 bits (822), Expect = 1.7e-84
Identity = 167/269 (62.08%), Postives = 195/269 (72.49%), Query Frame = 1


Query: 1   MAGSLKRKSQALDSQISRYVNLIFACMITKMARFSDFPPT-IESLPNDLLIEVLAKVAAF 60
           MA   K KS    + ISR          T+  R     PT I+SLPNDLL EVLAKVAA 
Sbjct: 1   MANHPKTKSLPFHTLISR---------TTQKNRTGVLSPTVIKSLPNDLLTEVLAKVAAS 60

Query: 61  SFTDLVQAKLATKEFLEASSHGYIFQHASLRNFQKLLWNNNPEFWSFMEKCNNNGNPETL 120
           S+ DLVQAKLATK+FLEAS   YIFQH SL NF+  LWNN+PEFWSF+E CNNN NPE+L
Sbjct: 61  SYVDLVQAKLATKQFLEASKDRYIFQHVSLGNFENHLWNNSPEFWSFIETCNNNENPESL 120

Query: 121 YQKGMLEFFTYCREASGMAYLKLSAQKGYSEACYVYGIILYTASSEDEGVKFLKICEAKL 180
           Y+KGMLEFFT+C+EASG+AYLKLSAQKGY +ACYV  +ILY + ++DEG +FLK  EAKL
Sbjct: 121 YRKGMLEFFTHCKEASGLAYLKLSAQKGYVDACYVCSVILYASKAKDEGFEFLKNHEAKL 180

Query: 181 GFKLAECRRRVKELVRYLWVKNKISLSKKDSSDQRGCESVVKNCCKKNVRRIGWDGNDED 240
             K+AECR RVK  V YLW+KN+IS S +D +D R C+  +   C+ N RR  WD  DED
Sbjct: 181 RNKMAECRWRVKRFVSYLWIKNRISSSGEDPND-RKCDKNIN--CRVNERRNSWDWKDED 240

Query: 241 DYYGEHTCEACKWNEEVSRFCNMLRTGSY 269
           DYYGE+TCE CKWN EV RFC MLRTG Y
Sbjct: 241 DYYGEYTCEKCKWNNEVFRFCKMLRTGRY 257

[Close]

BLAST of CmoCh04G013750 vs. NCBI nr
Match: gi|449435498|ref|XP_004135532.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 1.0e-81
Identity = 166/272 (61.03%), Postives = 198/272 (72.79%), Query Frame = 1


Query: 1   MAGSLKRKSQ-ALDSQISRYVNLIFACMITKMAR-FSDFPPTIESLPNDLLIEVLAKVAA 60
           MA  LKRKS+ + +SQIS            KM R FS     I SLPNDLLIEVLAKVAA
Sbjct: 1   MANQLKRKSEPSFNSQISTRTK--------KMCRPFSS--SLIVSLPNDLLIEVLAKVAA 60

Query: 61  FSFTDLVQAKLATKEFLEASSHGYIFQHASLRN--FQKLLWNNNPEFWSFMEKCNNNGNP 120
            S+ DLVQAKLATK FL AS+ GYIFQH SL N  F+ LLWNN P+  SFME  NNN NP
Sbjct: 61  SSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRNLLWNNTPQSRSFMETLNNNENP 120

Query: 121 ETLYQKGMLEFFTYCREASGMAYLKLSAQKGYSEACYVYGIILYTASSEDEGVKFLKICE 180
           E+LY+KG +EFF++ +EASG++YLK SAQKGY +ACYVYG+++Y A+ ++EGV++LK+CE
Sbjct: 121 ESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYVYGVVMYAANLKEEGVEYLKMCE 180

Query: 181 AKLGFKLAECRRRVKELVRYLWVKNKISLSKKDSSDQRGCESVVKNCCKKNVRRIGWDGN 240
           AKLG K+AECRRRVKE V Y W+KN+IS+SK+  S+           CK N R  GWD  
Sbjct: 181 AKLGNKMAECRRRVKEFVWYFWIKNRISMSKEICSNVN---------CKVNERSNGWDWK 240

Query: 241 DEDDYYGEHTCEACKWNEEVSRFCNMLRTGSY 269
           DEDDYYGEHTCE CKW+ EV RFCNMLR G Y
Sbjct: 241 DEDDYYGEHTCEQCKWSNEVLRFCNMLRRGGY 253

[Close]

BLAST of CmoCh04G013750 vs. NCBI nr
Match: gi|147773103|emb|CAN71689.1| (hypothetical protein VITISV_039291 [Vitis vinifera])

HSP 1 Score: 161.0 bits (406), Expect = 2.9e-36
Identity = 96/246 (39.02%), Postives = 141/246 (57.32%), Query Frame = 1


Query: 30  KMARFSDFPPTIESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHASL 89
           K  + + +  TIESL +DLLIEVL +VA+ SFTDL  AKL+ + FLEAS   ++ ++ S+
Sbjct: 4   KKTKRNSYGSTIESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISI 63

Query: 90  RNFQKL-LWNNNPEFWSFMEKCNNNGNPETLYQKGMLEFFTYCREASGMAYLKLSAQKGY 149
             F  +  W    E  SF++ C  +GNPE LY++GM+EFF++ +  S   YLK + + G+
Sbjct: 64  EKFPTIPWWQVKDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGH 123

Query: 150 SEACYVYGIILYTA---SSEDEGVKFLKICEAKLGFKLAECRRRVKELVRYLWVKNKISL 209
            EA YVYGIIL      S+E++G+K L     K   KL ECR+R +     +W++N I  
Sbjct: 124 MEASYVYGIILLCKGGDSNEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPIVK 183

Query: 210 SKKDSSDQRGCESVVKNCCKKNVRRIG------WDGNDED-DYYGEHTCEACKWNEEVSR 265
            ++ +S           C ++N   IG      W  +DED D    + CEAC W++EVS 
Sbjct: 184 CQELTSYH------ANTCGRRNNGGIGGKRGWPWIEDDEDKDVEEVNYCEACIWDDEVSL 241

[Close]

BLAST of CmoCh04G013750 vs. NCBI nr
Match: gi|731376767|ref|XP_010656578.1| (PREDICTED: putative F-box protein At1g67623 [Vitis vinifera])

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-35
Identity = 95/244 (38.93%), Postives = 136/244 (55.74%), Query Frame = 1


Query: 40  TIESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFLEASSHGYIFQHASLRNFQKL-LWN 99
           TIE LP+DLLIEVL +VA  SFTDL  AKL+ + FLEAS   +I ++ S+  F  +  W 
Sbjct: 14  TIEYLPSDLLIEVLTRVATSSFTDLFNAKLSCRNFLEASDDKFIMKNISIEKFPAIPWWQ 73

Query: 100 NNPEFWSFMEKCNNNGNPETLYQKGMLEFFTYCREASGMAYLKLSAQKGYSEACYVYGII 159
              E  SF++ C  +GNPE LY++GM+EFF++ +  SG  YLK + +  + EA YVYGII
Sbjct: 74  VKDEVSSFLKACKESGNPEALYRQGMMEFFSWKKVESGEEYLKRALEMEHMEASYVYGII 133

Query: 160 LYT---ASSEDEGVKFLKICEAKLGFKLAECRRRVKELVRYLWVKNKISLSKKDSSDQRG 219
           L      S+E++G+K L     K   KL ECR++ K  +  +W++N I            
Sbjct: 134 LLCKGGESNEEQGMKLLN--AVKKSRKLGECRKKTKAFILSMWIRNPIV----------K 193

Query: 220 CESVV----KNCCKKNVRRIG-------W----DGNDEDDYYGEHTCEACKWNEEVSRFC 265
           C+ +V    K C ++N   IG       W    + N++ D    + CE C W +EVS FC
Sbjct: 194 CQELVNHHAKTCGRRNNGGIGGKRGWWQWIDDREDNEDKDVEEVNYCEGCMWEDEVSLFC 245

The following BLAST results are available for this feature:

BLAST of CmoCh04G013750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB79_ARATH	1.2e-16	29.17	Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1	[more]
FB127_ARATH	2.4e-06	26.47	F-box protein At2g35280 OS=Arabidopsis thaliana GN=At2g35280 PE=2 SV=1	[more]

BLAST of CmoCh04G013750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS96_CUCSA	8.7e-88	62.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1	[more]
A5AV49_VITVI	2.0e-36	39.02	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1	[more]
B9I6Z5_POPTR	3.0e-32	36.03	F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1	[more]
A0A061G0Z9_THECC	4.1e-29	35.78	F-box family protein, putative OS=Theobroma cacao GN=TCM_014925 PE=4 SV=1	[more]
A0A0B2P0Z6_GLYSO	3.5e-28	36.84	Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1	[more]

BLAST of CmoCh04G013750 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67623.1	6.5e-18	29.17	F-box family protein	[more]
AT1G74875.1	7.4e-14	25.55	FUNCTIONS IN: molecular_function unknown	[more]
AT2G35280.1	1.4e-07	26.47	F-box family protein	[more]

BLAST of CmoCh04G013750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439561\|ref\|XP_004137554.1\|	1.2e-87	62.88	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|659107472\|ref\|XP_008453691.1\|	1.7e-84	62.08	PREDICTED: putative F-box protein At1g67623 [Cucumis melo]	[more]
gi\|449435498\|ref\|XP_004135532.1\|	1.0e-81	61.03	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|147773103\|emb\|CAN71689.1\|	2.9e-36	39.02	hypothetical protein VITISV_039291 [Vitis vinifera]	[more]
gi\|731376767\|ref\|XP_010656578.1\|	1.9e-35	38.93	PREDICTED: putative F-box protein At1g67623 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013750.1	CmoCh04G013750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 105..170 score: 4.
None	No IPR available	PANTHER	PTHR33784	FAMILY NOT NAMED	coord: 27..268 score: 2.1
None	No IPR available	PANTHER	PTHR33784:SF4	SUBFAMILY NOT NAMED	coord: 27..268 score: 2.1
None	No IPR available	unknown	SSF81901	HCP-like	coord: 70..174 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G013750	Wild cucumber (PI 183967)	cmocpiB725
CmoCh04G013750	Cucumber (Chinese Long) v2	cmocuB717
CmoCh04G013750	Melon (DHL92) v3.5.1	cmomeB644
CmoCh04G013750	Watermelon (Charleston Gray)	cmowcgB624
CmoCh04G013750	Watermelon (97103) v1	cmowmB724
CmoCh04G013750	Cucurbita pepo (Zucchini)	cmocpeB648
CmoCh04G013750	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G013750	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G013750	Bottle gourd (USVL1VR-Ls)	cmolsiB669
CmoCh04G013750	Cucumber (Gy14) v2	cgybcmoB628
CmoCh04G013750	Melon (DHL92) v3.6.1	cmomedB734
CmoCh04G013750	Silver-seed gourd	carcmoB0986
CmoCh04G013750	Silver-seed gourd	carcmoB0987
CmoCh04G013750	Silver-seed gourd	carcmoB1138
CmoCh04G013750	Cucumber (Chinese Long) v3	cmocucB0849
CmoCh04G013750	Watermelon (97103) v2	cmowmbB698
CmoCh04G013750	Wax gourd	cmowgoB0891
CmoCh04G013750	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G013750	Cucurbita moschata (Rifu)	cmocmoB343
CmoCh04G013750	Cucumber (Gy14) v1	cgycmoB0124
CmoCh04G013750	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G013750	Cucurbita maxima (Rimu)	cmacmoB425
CmoCh04G013750	Cucurbita maxima (Rimu)	cmacmoB728