CmoCh04G012790 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G012790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Copia protein
Location	Cmo_Chr04 : 6485651 .. 6486760 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGAAGATTCAAGTGACACTAGTGTTGGCGAGCAAGAAGTGACTCAACCAAGCGAGCCTAGTGAAAATGAAATGACACCTCAACAACTCAGACATTCAGAAATAATCCTAAAGGAAAATCTAGAGTATGCCAACGCAGTAGAAGACGAAGTTAATGAGCCAGAGATATATGAAGAAGCATCACAAAACTCAGCTTGGCAGAAAGCAATGGAGGAAGAAACTATAGCCCTAGAACAAAATCAGACTTGGGAATTAGTGTCAAGACCAAGAGATACCAAACTCATCTCTTGCAAGTGGGCTTACGAAATAATGTGTACCCCGGATGGATCAATCGTGAGATACAAAGCTCAGACTATAGATTCAGGGTTCTCTCAAGAATATGGACTAGATTATGATGAAACGATTAGGCCAGTGGCAAAGATCATTATCGTACAAGTTCCTCCAGTACTTACGGTAAATAAAGATTGGAAATTATGGCAGATGGATATGAATAATGCTTTCTTGCAGGGAGAGTTAAACAGAGAGTTCTACATGGACCAACCGAAAAAATTCGAAAATGAAGTTGGAGTCTTTGATCAATATATGCAAAATCTGAAGAAGCCTTATTTAGATACAGCTCGACCGACCTTAAGATATGTCAAAGGAGACCACGATACCCGAAGATCAATCACTGGGTATGTGTTCAAGCTCGGTTCAAGAACAATTTTTTGGTGTAACAAAAGACAACAAACAATATCATTGTCAACTAAAGAAGCAGAGTACAGAGCAGCAGCTGGAGCAACTCAGGAAAATACATGCTTAAAACTTTTGATGGAAGATTGGCACCAGAAAATTGAGTATCCAATACCACTTTATTGCAACAATCAATCTGCGATTCGCCTTGCAGAAAATCCGGTGTTTCATGCTAGAACAAAGCATGTGGAGGTGCACAACCACTTCATTAGAGAGAAGGTCCTAAAGGAAGAGATCAAGATGCAGCAAATCAAGACAGATGTCCAAGTGGCAGACTTGTTTACAAAAGGGCTGAATACTGGCAAACATGAGAGTTTTCGCTGTCACCTCAACATGGTGCAGCGAATGAGGACTAGTGCTGAGGGGGAGTGTTGA

mRNA sequence

ATGCCTGAAGATTCAAGTGACACTAGTGTTGGCGAGCAAGAAGTGACTCAACCAAGCGAGCCTAGTGAAAATGAAATGACACCTCAACAACTCAGACATTCAGAAATAATCCTAAAGGAAAATCTAGAGTATGCCAACGCAGTAGAAGACGAAGTTAATGAGCCAGAGATATATGAAGAAGCATCACAAAACTCAGCTTGGCAGAAAGCAATGGAGGAAGAAACTATAGCCCTAGAACAAAATCAGACTTGGGAATTAGTGTCAAGACCAAGAGATACCAAACTCATCTCTTGCAAGTGGGCTTACGAAATAATGTGTACCCCGGATGGATCAATCGTGAGATACAAAGCTCAGACTATAGATTCAGGGTTCTCTCAAGAATATGGACTAGATTATGATGAAACGATTAGGCCAGTGGCAAAGATCATTATCGTACAAGTTCCTCCAGTACTTACGGTAAATAAAGATTGGAAATTATGGCAGATGGATATGAATAATGCTTTCTTGCAGGGAGAGTTAAACAGAGAGTTCTACATGGACCAACCGAAAAAATTCGAAAATGAAGTTGGAGTCTTTGATCAATATATGCAAAATCTGAAGAAGCCTTATTTAGATACAGCTCGACCGACCTTAAGATATGTCAAAGGAGACCACGATACCCGAAGATCAATCACTGGGTATGTGTTCAAGCTCGGTTCAAGAACAATTTTTTGGTGTAACAAAAGACAACAAACAATATCATTGTCAACTAAAGAAGCAGAGTACAGAGCAGCAGCTGGAGCAACTCAGGAAAATACATGCTTAAAACTTTTGATGGAAGATTGGCACCAGAAAATTGAGTATCCAATACCACTTTATTGCAACAATCAATCTGCGATTCGCCTTGCAGAAAATCCGGTGTTTCATGCTAGAACAAAGCATGTGGAGGTGCACAACCACTTCATTAGAGAGAAGGTCCTAAAGGAAGAGATCAAGATGCAGCAAATCAAGACAGATGTCCAAGTGGCAGACTTGTTTACAAAAGGGCTGAATACTGGCAAACATGAGAGTTTTCGCTGTCACCTCAACATGGTGCAGCGAATGAGGACTAGTGCTGAGGGGGAGTGTTGA

Coding sequence (CDS)

ATGCCTGAAGATTCAAGTGACACTAGTGTTGGCGAGCAAGAAGTGACTCAACCAAGCGAGCCTAGTGAAAATGAAATGACACCTCAACAACTCAGACATTCAGAAATAATCCTAAAGGAAAATCTAGAGTATGCCAACGCAGTAGAAGACGAAGTTAATGAGCCAGAGATATATGAAGAAGCATCACAAAACTCAGCTTGGCAGAAAGCAATGGAGGAAGAAACTATAGCCCTAGAACAAAATCAGACTTGGGAATTAGTGTCAAGACCAAGAGATACCAAACTCATCTCTTGCAAGTGGGCTTACGAAATAATGTGTACCCCGGATGGATCAATCGTGAGATACAAAGCTCAGACTATAGATTCAGGGTTCTCTCAAGAATATGGACTAGATTATGATGAAACGATTAGGCCAGTGGCAAAGATCATTATCGTACAAGTTCCTCCAGTACTTACGGTAAATAAAGATTGGAAATTATGGCAGATGGATATGAATAATGCTTTCTTGCAGGGAGAGTTAAACAGAGAGTTCTACATGGACCAACCGAAAAAATTCGAAAATGAAGTTGGAGTCTTTGATCAATATATGCAAAATCTGAAGAAGCCTTATTTAGATACAGCTCGACCGACCTTAAGATATGTCAAAGGAGACCACGATACCCGAAGATCAATCACTGGGTATGTGTTCAAGCTCGGTTCAAGAACAATTTTTTGGTGTAACAAAAGACAACAAACAATATCATTGTCAACTAAAGAAGCAGAGTACAGAGCAGCAGCTGGAGCAACTCAGGAAAATACATGCTTAAAACTTTTGATGGAAGATTGGCACCAGAAAATTGAGTATCCAATACCACTTTATTGCAACAATCAATCTGCGATTCGCCTTGCAGAAAATCCGGTGTTTCATGCTAGAACAAAGCATGTGGAGGTGCACAACCACTTCATTAGAGAGAAGGTCCTAAAGGAAGAGATCAAGATGCAGCAAATCAAGACAGATGTCCAAGTGGCAGACTTGTTTACAAAAGGGCTGAATACTGGCAAACATGAGAGTTTTCGCTGTCACCTCAACATGGTGCAGCGAATGAGGACTAGTGCTGAGGGGGAGTGTTGA

Homology

[Close]

BLAST of CmoCh04G012790 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-22
Identity = 68/188 (36.17%), Postives = 103/188 (54.79%), Query Frame = 1


Query: 189  VGVFDQYMQNLKKPYLDTARPTLRYVKG-------------------------DHDTRRS 248
            VGV  ++++N  K + +  +  LRY++G                         D D R+S
Sbjct: 1133 VGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKS 1192

Query: 249  ITGYVFKLGSRTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLMED--WHQKIEY 308
             TGY+F      I W +K Q+ ++LST EAEY AA    +E   LK  +++   HQK EY
Sbjct: 1193 STGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQK-EY 1252

Query: 309  PIPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTDVQVADLFTK 350
             +  YC++QSAI L++N ++HARTKH++V  H+IRE V  E +K+ +I T+   AD+ TK
Sbjct: 1253 VV--YCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTK 1312

[Close]

BLAST of CmoCh04G012790 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-22
Identity = 59/152 (38.82%), Postives = 88/152 (57.89%), Query Frame = 1


Query: 216  GDHDTRRSITGYVFKLGS-RTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLMED 275
            G    R+S TGY+FK+     I W  KRQ +++ S+ EAEY A   A +E   LK L+  
Sbjct: 1258 GSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTS 1317

Query: 276  WHQKIEYPIPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTDVQ 335
             + K+E PI +Y +NQ  I +A NP  H R KH+++  HF RE+V    I ++ I T+ Q
Sbjct: 1318 INIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQ 1377

Query: 336  VADLFTKGLNTGKHESFRCHLNMVQRMRTSAE 367
            +AD+FTK L   +    R  L ++Q  +++AE
Sbjct: 1378 LADIFTKPLPAARFVELRDKLGLLQDDQSNAE 1409

[Close]

BLAST of CmoCh04G012790 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.7e-10
Identity = 37/111 (33.33%), Postives = 62/111 (55.86%), Query Frame = 1


Query: 37  ILKENLEYANAVEDEVN-EPEIYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKL 96
           I K N +Y+  +   +  EP+    A ++  W +AM+EE  AL +N+TW LV  P +  +
Sbjct: 9   INKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNI 68

Query: 97  ISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDYDETIRPVAKIIIVQ 147
           + CKW ++     DG++ R KA+ +  GF QE G+ + ET  PV +   ++
Sbjct: 69  LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIR 119

[Close]

BLAST of CmoCh04G012790 vs. TrEMBL
Match: A5BJX0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003097 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 6.8e-59
Identity = 127/217 (58.53%), Postives = 148/217 (68.20%), Query Frame = 1


Query: 180  DQPKKFEN-EVGVFDQYMQNLKKPYLDTARPTLRYVK----------------------- 239
            D  KKF   E GV  +YMQN KKP+L+  R  LR+VK                       
Sbjct: 836  DLLKKFGMLEFGVMSRYMQNPKKPHLEVVRRILRHVKSTIDYGLLYKKGEDCKLVGYCDA 895

Query: 240  ---GDHDTRRSITGYVFKLGSRTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLM 299
               GDHDTRRS TGYVF LGSR I WC+KRQ T+SLST EAEYRAAA ATQE+T L  LM
Sbjct: 896  DYTGDHDTRRSTTGYVFMLGSRAISWCSKRQPTVSLSTTEAEYRAAAMATQESTWLIXLM 955

Query: 300  EDWHQKIEYPIPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTD 359
             D HQ ++Y +PLYC+NQ A+ LAENPVFHARTKHVEVH HFIREKVL+EE++++QIK+ 
Sbjct: 956  NDLHQLVDYAVPLYCDNQLAVHLAENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSG 1015

Query: 360  VQVADLFTKGLNTGKHESFRCHLNMVQRMRTSAEGEC 370
             QVADLFTKGL+  K ESF   L MV+ + T  EGEC
Sbjct: 1016 DQVADLFTKGLSGSKFESFCHQLGMVKILETDVEGEC 1052

[Close]

BLAST of CmoCh04G012790 vs. TrEMBL
Match: A5AKW8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.4e-58
Identity = 122/207 (58.94%), Postives = 142/207 (68.60%), Query Frame = 1


Query: 189  VGVFDQYMQNLKKPYLDTARPTLRYVKG--------------------------DHDTRR 248
            VGV  +YMQN KKP+L+  R  LR+VKG                          DHDTR 
Sbjct: 1094 VGVMSRYMQNPKKPHLEAVRRILRHVKGTIDYGLLYKKXEDCKLVGYCDADYAGDHDTRX 1153

Query: 249  SITGYVFKLGSRTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLMEDWHQKIEYP 308
            S TGYVF LGS  I WC+KRQ T+SLST EAEYRAAA ATQE+  L  LM D HQ ++Y 
Sbjct: 1154 STTGYVFMLGSGAISWCSKRQPTVSLSTTEAEYRAAAMATQESMWLIRLMNDLHQLVDYA 1213

Query: 309  IPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTDVQVADLFTKG 368
            +PLYC+NQSA+RLAENPVFHARTKHVEVH HFIREKVLKEE+++ QIK++ QVADLFTKG
Sbjct: 1214 VPLYCDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLKEEVELNQIKSEDQVADLFTKG 1273

Query: 369  LNTGKHESFRCHLNMVQRMRTSAEGEC 370
            L+  K ESF   L MV+ +    EGEC
Sbjct: 1274 LSGSKFESFCHQLGMVKILEADVEGEC 1300

[Close]

BLAST of CmoCh04G012790 vs. TrEMBL
Match: A5BGK7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007301 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 6.3e-57
Identity = 120/207 (57.97%), Postives = 141/207 (68.12%), Query Frame = 1


Query: 189 VGVFDQYMQNLKKPYLDTARPTLRYVKG--------------------------DHDTRR 248
           VGV  +YMQN KKP+L+  R  LR+VKG                          DHDTRR
Sbjct: 767 VGVMSRYMQNPKKPHLEAVRRILRHVKGTIDYGLLYKKGEDCKLVGYCDADYAGDHDTRR 826

Query: 249 SITGYVFKLGSRTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLMEDWHQKIEYP 308
           S TGYVF LGS  I WC+KRQ T+SL T EAEYRAAA A QE+T L  LM D HQ ++Y 
Sbjct: 827 STTGYVFMLGSGAISWCSKRQPTVSLLTTEAEYRAAAMAAQESTWLIRLMNDLHQLVDYA 886

Query: 309 IPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTDVQVADLFTKG 368
           +PLYC+NQSA+RLAENPVFHARTKHVEVH HFIREKVL+EE++++QIK+  QVADLFTKG
Sbjct: 887 VPLYCDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSKDQVADLFTKG 946

Query: 369 LNTGKHESFRCHLNMVQRMRTSAEGEC 370
           L+  K E F   L MV+ +    EGEC
Sbjct: 947 LSGSKFECFCHQLGMVKILEADVEGEC 973

[Close]

BLAST of CmoCh04G012790 vs. TrEMBL
Match: A0A151SZC9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_015612 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.1e-48
Identity = 104/198 (52.53%), Postives = 130/198 (65.66%), Query Frame = 1


Query: 189 VGVFDQYMQNLKKPYLDTARPTLRYVK--------------------------GDHDTRR 248
           VGV  ++MQN KKP L+ AR  L+YVK                          GDHDTRR
Sbjct: 164 VGVVSRFMQNPKKPQLEVARRILKYVKNTIDYGIFYKKGAPCEVTGYCDADYTGDHDTRR 223

Query: 249 SITGYVFKLGSRTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLMEDWHQKIEYP 308
           S TGY+F +GS  I WC+KRQ T+SLS+ E EYRA A A QE + L  L++D  + ++YP
Sbjct: 224 STTGYMFTMGSGAISWCSKRQSTVSLSSTEVEYRALAMAAQECSWLMQLLQDLRKLVDYP 283

Query: 309 IPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTDVQVADLFTKG 361
           + L+CNNQSAIRL ENPVFHARTKHVEVH HF+REKVL+ +I+M+ I T+ QVAD+FTKG
Sbjct: 284 VTLHCNNQSAIRLVENPVFHARTKHVEVHYHFVREKVLQGDIEMKYINTEGQVADIFTKG 343

[Close]

BLAST of CmoCh04G012790 vs. TrEMBL
Match: A0A0J8CBC5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g134020 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.0e-47
Identity = 120/299 (40.13%), Postives = 167/299 (55.85%), Query Frame = 1


Query: 54  EPEIYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKLISCKWAYEIMCTPDGSIV 113
           EP  +++AS++S W++AM EE  AL +N TWELV R  D  L+ CKW Y I    DGS+ 
Sbjct: 183 EPTNFKQASKDSRWRQAMLEEYNALIKNDTWELVPRNYDKNLLGCKWVYWIKYHSDGSVE 242

Query: 114 RYKAQTIDSGFSQEYGLDYDETIRPVAKIIIVQVPPVLTVNKDWKLWQMDMNNAFLQGEL 173
           R+KA+ +  G  Q+ G+DY ET  PV K  IV++   + V+  W + Q+D+ NAFL G L
Sbjct: 243 RFKARLVVFGNHQQTGIDYFETFSPVVKPTIVRLVLTIGVSLKWSIRQLDVKNAFLHGFL 302

Query: 174 NREFYMDQP----------KKFENEVG----VFDQYMQNLKKPYLDTARPTLRYVKGDHD 233
           N EF M  P          K F+   G     +  Y+ +   P +  A     +  G  D
Sbjct: 303 NEEF-MHAPRITHFHAVKIKNFQISAGHYTLDYGLYLYSSISPTVVIAYSDADWA-GCPD 362

Query: 234 TRRSITGYVFKLGSRTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLMEDWHQKI 293
           TR S TGYV  LG   I W +K+Q T+S S+ EAEYRA A    +   LK L+ D    +
Sbjct: 363 TRCSTTGYVVFLGKNLISWRSKKQPTVSKSSTEAEYRAVAYTAAKTIWLKQLLADIDHFL 422

Query: 294 EYPIPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTDVQVADL 339
             P+ +YC+N SA  L  NPV+H R+KH++V  HFIRE V K  + ++ + T  QV+ L
Sbjct: 423 RRPVIVYCDNVSATYLTANPVYHDRSKHIDVDYHFIREMVAKGGLIVRHVPTQSQVSFL 479

[Close]

BLAST of CmoCh04G012790 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 109.0 bits (271), Expect = 6.3e-24
Identity = 53/140 (37.86%), Postives = 83/140 (59.29%), Query Frame = 1


Query: 51  EVNEPEIYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKLISCKWAYEIMCTPDG 110
           +  EP  Y EA +   W  AM++E  A+E   TWE+ + P + K I CKW Y+I    DG
Sbjct: 82  KAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 141

Query: 111 SIVRYKAQTIDSGFSQEYGLDYDETIRPVAKIIIVQVPPVLTVNKDWKLWQMDMNNAFLQ 170
           +I RYKA+ +  G++Q+ G+D+ ET  PV K+  V++   ++   ++ L Q+D++NAFL 
Sbjct: 142 TIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLN 201

Query: 171 GELNREFYMDQPKKFENEVG 191
           G+L+ E YM  P  +    G
Sbjct: 202 GDLDEEIYMKLPPGYAARQG 221

[Close]

BLAST of CmoCh04G012790 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-11
Identity = 37/111 (33.33%), Postives = 62/111 (55.86%), Query Frame = 1


Query: 37  ILKENLEYANAVEDEVN-EPEIYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKL 96
           I K N +Y+  +   +  EP+    A ++  W +AM+EE  AL +N+TW LV  P +  +
Sbjct: 9   INKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNI 68

Query: 97  ISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDYDETIRPVAKIIIVQ 147
           + CKW ++     DG++ R KA+ +  GF QE G+ + ET  PV +   ++
Sbjct: 69  LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIR 119

[Close]

BLAST of CmoCh04G012790 vs. NCBI nr
Match: gi|147783961|emb|CAN63563.1| (hypothetical protein VITISV_003097 [Vitis vinifera])

HSP 1 Score: 236.1 bits (601), Expect = 9.7e-59
Identity = 127/217 (58.53%), Postives = 148/217 (68.20%), Query Frame = 1


Query: 180  DQPKKFEN-EVGVFDQYMQNLKKPYLDTARPTLRYVK----------------------- 239
            D  KKF   E GV  +YMQN KKP+L+  R  LR+VK                       
Sbjct: 836  DLLKKFGMLEFGVMSRYMQNPKKPHLEVVRRILRHVKSTIDYGLLYKKGEDCKLVGYCDA 895

Query: 240  ---GDHDTRRSITGYVFKLGSRTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLM 299
               GDHDTRRS TGYVF LGSR I WC+KRQ T+SLST EAEYRAAA ATQE+T L  LM
Sbjct: 896  DYTGDHDTRRSTTGYVFMLGSRAISWCSKRQPTVSLSTTEAEYRAAAMATQESTWLIXLM 955

Query: 300  EDWHQKIEYPIPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTD 359
             D HQ ++Y +PLYC+NQ A+ LAENPVFHARTKHVEVH HFIREKVL+EE++++QIK+ 
Sbjct: 956  NDLHQLVDYAVPLYCDNQLAVHLAENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSG 1015

Query: 360  VQVADLFTKGLNTGKHESFRCHLNMVQRMRTSAEGEC 370
             QVADLFTKGL+  K ESF   L MV+ + T  EGEC
Sbjct: 1016 DQVADLFTKGLSGSKFESFCHQLGMVKILETDVEGEC 1052

[Close]

BLAST of CmoCh04G012790 vs. NCBI nr
Match: gi|147794801|emb|CAN71427.1| (hypothetical protein VITISV_027864 [Vitis vinifera])

HSP 1 Score: 233.4 bits (594), Expect = 6.3e-58
Identity = 122/207 (58.94%), Postives = 142/207 (68.60%), Query Frame = 1


Query: 189  VGVFDQYMQNLKKPYLDTARPTLRYVKG--------------------------DHDTRR 248
            VGV  +YMQN KKP+L+  R  LR+VKG                          DHDTR 
Sbjct: 1094 VGVMSRYMQNPKKPHLEAVRRILRHVKGTIDYGLLYKKXEDCKLVGYCDADYAGDHDTRX 1153

Query: 249  SITGYVFKLGSRTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLMEDWHQKIEYP 308
            S TGYVF LGS  I WC+KRQ T+SLST EAEYRAAA ATQE+  L  LM D HQ ++Y 
Sbjct: 1154 STTGYVFMLGSGAISWCSKRQPTVSLSTTEAEYRAAAMATQESMWLIRLMNDLHQLVDYA 1213

Query: 309  IPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTDVQVADLFTKG 368
            +PLYC+NQSA+RLAENPVFHARTKHVEVH HFIREKVLKEE+++ QIK++ QVADLFTKG
Sbjct: 1214 VPLYCDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLKEEVELNQIKSEDQVADLFTKG 1273

Query: 369  LNTGKHESFRCHLNMVQRMRTSAEGEC 370
            L+  K ESF   L MV+ +    EGEC
Sbjct: 1274 LSGSKFESFCHQLGMVKILEADVEGEC 1300

[Close]

BLAST of CmoCh04G012790 vs. NCBI nr
Match: gi|147798853|emb|CAN61340.1| (hypothetical protein VITISV_007301 [Vitis vinifera])

HSP 1 Score: 229.6 bits (584), Expect = 9.1e-57
Identity = 120/207 (57.97%), Postives = 141/207 (68.12%), Query Frame = 1


Query: 189 VGVFDQYMQNLKKPYLDTARPTLRYVKG--------------------------DHDTRR 248
           VGV  +YMQN KKP+L+  R  LR+VKG                          DHDTRR
Sbjct: 767 VGVMSRYMQNPKKPHLEAVRRILRHVKGTIDYGLLYKKGEDCKLVGYCDADYAGDHDTRR 826

Query: 249 SITGYVFKLGSRTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLMEDWHQKIEYP 308
           S TGYVF LGS  I WC+KRQ T+SL T EAEYRAAA A QE+T L  LM D HQ ++Y 
Sbjct: 827 STTGYVFMLGSGAISWCSKRQPTVSLLTTEAEYRAAAMAAQESTWLIRLMNDLHQLVDYA 886

Query: 309 IPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTDVQVADLFTKG 368
           +PLYC+NQSA+RLAENPVFHARTKHVEVH HFIREKVL+EE++++QIK+  QVADLFTKG
Sbjct: 887 VPLYCDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSKDQVADLFTKG 946

Query: 369 LNTGKHESFRCHLNMVQRMRTSAEGEC 370
           L+  K E F   L MV+ +    EGEC
Sbjct: 947 LSGSKFECFCHQLGMVKILEADVEGEC 973

[Close]

BLAST of CmoCh04G012790 vs. NCBI nr
Match: gi|658020190|ref|XP_008345472.1| (PREDICTED: uncharacterized protein LOC103408393 [Malus domestica])

HSP 1 Score: 212.6 bits (540), Expect = 1.2e-51
Identity = 116/194 (59.79%), Postives = 131/194 (67.53%), Query Frame = 1


Query: 189 VGVFDQYMQNLKKPYLDTARPTLRYVK--------------------------GDHDTRR 248
           VGV  +YMQN KKP+L+  R  LRYVK                          GDHDT R
Sbjct: 202 VGVMSRYMQNPKKPHLEAVRRILRYVKSTIDYGLLYKKXEDCKLVGYCDADYAGDHDTXR 261

Query: 249 SITGYVFKLGSRTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLMEDWHQKIEYP 308
           S TGYVFKLGS TI  C+KRQ T+SLST EAEYRAAA   QEN  L  LM D HQ ++Y 
Sbjct: 262 STTGYVFKLGSGTISXCSKRQPTVSLSTTEAEYRAAAMXAQENAWLVQLMSDLHQPVDYS 321

Query: 309 IPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTDVQVADLFTKG 354
           +PLYC+NQSAIRLAEN VFHARTKHVEVH HFIREKVL+E I+M+Q+KT+ QVADLFTK 
Sbjct: 322 VPLYCDNQSAIRLAENXVFHARTKHVEVHYHFIREKVLQEXIEMRQVKTNDQVADLFTKS 381

[Close]

BLAST of CmoCh04G012790 vs. NCBI nr
Match: gi|1012348973|gb|KYP60164.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-48
Identity = 104/198 (52.53%), Postives = 130/198 (65.66%), Query Frame = 1


Query: 189 VGVFDQYMQNLKKPYLDTARPTLRYVK--------------------------GDHDTRR 248
           VGV  ++MQN KKP L+ AR  L+YVK                          GDHDTRR
Sbjct: 164 VGVVSRFMQNPKKPQLEVARRILKYVKNTIDYGIFYKKGAPCEVTGYCDADYTGDHDTRR 223

Query: 249 SITGYVFKLGSRTIFWCNKRQQTISLSTKEAEYRAAAGATQENTCLKLLMEDWHQKIEYP 308
           S TGY+F +GS  I WC+KRQ T+SLS+ E EYRA A A QE + L  L++D  + ++YP
Sbjct: 224 STTGYMFTMGSGAISWCSKRQSTVSLSSTEVEYRALAMAAQECSWLMQLLQDLRKLVDYP 283

Query: 309 IPLYCNNQSAIRLAENPVFHARTKHVEVHNHFIREKVLKEEIKMQQIKTDVQVADLFTKG 361
           + L+CNNQSAIRL ENPVFHARTKHVEVH HF+REKVL+ +I+M+ I T+ QVAD+FTKG
Sbjct: 284 VTLHCNNQSAIRLVENPVFHARTKHVEVHYHFVREKVLQGDIEMKYINTEGQVADIFTKG 343

The following BLAST results are available for this feature:

BLAST of CmoCh04G012790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.1e-22	36.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	3.3e-22	38.82	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M820_ARATH	3.7e-10	33.33	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CmoCh04G012790 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BJX0_VITVI	6.8e-59	58.53	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003097 PE=4 SV=1	[more]
A5AKW8_VITVI	4.4e-58	58.94	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1	[more]
A5BGK7_VITVI	6.3e-57	57.97	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007301 PE=4 SV=1	[more]
A0A151SZC9_CAJCA	4.1e-48	52.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A0J8CBC5_BETVU	6.0e-47	40.13	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g134020 PE=4 S...	[more]

BLAST of CmoCh04G012790 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	6.3e-24	37.86	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.1e-11	33.33	ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

BLAST of CmoCh04G012790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147783961\|emb\|CAN63563.1\|	9.7e-59	58.53	hypothetical protein VITISV_003097 [Vitis vinifera]	[more]
gi\|147794801\|emb\|CAN71427.1\|	6.3e-58	58.94	hypothetical protein VITISV_027864 [Vitis vinifera]	[more]
gi\|147798853\|emb\|CAN61340.1\|	9.1e-57	57.97	hypothetical protein VITISV_007301 [Vitis vinifera]	[more]
gi\|658020190\|ref\|XP_008345472.1\|	1.2e-51	59.79	PREDICTED: uncharacterized protein LOC103408393 [Malus domestica]	[more]
gi\|1012348973\|gb\|KYP60164.1\|	5.9e-48	52.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G012790.1	CmoCh04G012790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 81..188 score: 4.9
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..282 score: 1.0
None	No IPR available	PANTHER	PTHR11439:SF164	SUBFAMILY NOT NAMED	coord: 3..282 score: 1.0
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 81..309 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G012790	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G012790	Cucurbita pepo (Zucchini)	cmocpeB675
CmoCh04G012790	Cucurbita pepo (Zucchini)	cmocpeB706
CmoCh04G012790	Bottle gourd (USVL1VR-Ls)	cmolsiB620
CmoCh04G012790	Bottle gourd (USVL1VR-Ls)	cmolsiB637
CmoCh04G012790	Bottle gourd (USVL1VR-Ls)	cmolsiB653
CmoCh04G012790	Bottle gourd (USVL1VR-Ls)	cmolsiB669
CmoCh04G012790	Cucumber (Gy14) v2	cgybcmoB387
CmoCh04G012790	Cucumber (Gy14) v2	cgybcmoB531
CmoCh04G012790	Cucumber (Gy14) v2	cgybcmoB651
CmoCh04G012790	Cucumber (Gy14) v2	cgybcmoB666
CmoCh04G012790	Melon (DHL92) v3.6.1	cmomedB712
CmoCh04G012790	Melon (DHL92) v3.6.1	cmomedB734
CmoCh04G012790	Melon (DHL92) v3.6.1	cmomedB767
CmoCh04G012790	Melon (DHL92) v3.6.1	cmomedB799
CmoCh04G012790	Silver-seed gourd	carcmoB0368
CmoCh04G012790	Silver-seed gourd	carcmoB0423
CmoCh04G012790	Silver-seed gourd	carcmoB0923
CmoCh04G012790	Silver-seed gourd	carcmoB1168
CmoCh04G012790	Cucumber (Chinese Long) v3	cmocucB0815
CmoCh04G012790	Cucumber (Chinese Long) v3	cmocucB0840
CmoCh04G012790	Cucumber (Chinese Long) v3	cmocucB0872
CmoCh04G012790	Cucumber (Chinese Long) v3	cmocucB0887
CmoCh04G012790	Cucumber (Chinese Long) v3	cmocucB0907
CmoCh04G012790	Watermelon (97103) v2	cmowmbB692
CmoCh04G012790	Watermelon (97103) v2	cmowmbB715
CmoCh04G012790	Watermelon (97103) v2	cmowmbB724
CmoCh04G012790	Watermelon (97103) v2	cmowmbB754
CmoCh04G012790	Watermelon (97103) v2	cmowmbB769
CmoCh04G012790	Wax gourd	cmowgoB0820
CmoCh04G012790	Wax gourd	cmowgoB0875
CmoCh04G012790	Wax gourd	cmowgoB0878
CmoCh04G012790	Wax gourd	cmowgoB0891
CmoCh04G012790	Cucurbita moschata (Rifu)	cmocmoB258
CmoCh04G012790	Cucurbita moschata (Rifu)	cmocmoB368
CmoCh04G012790	Cucurbita moschata (Rifu)	cmocmoB434
CmoCh04G012790	Cucurbita moschata (Rifu)	cmocmoB450
CmoCh04G012790	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G012790	Cucumber (Gy14) v1	cgycmoB0475
CmoCh04G012790	Cucurbita maxima (Rimu)	cmacmoB306
CmoCh04G012790	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G012790	Cucurbita maxima (Rimu)	cmacmoB730
CmoCh04G012790	Wild cucumber (PI 183967)	cmocpiB746
CmoCh04G012790	Wild cucumber (PI 183967)	cmocpiB756
CmoCh04G012790	Cucumber (Chinese Long) v2	cmocuB736
CmoCh04G012790	Cucumber (Chinese Long) v2	cmocuB750
CmoCh04G012790	Melon (DHL92) v3.5.1	cmomeB622
CmoCh04G012790	Melon (DHL92) v3.5.1	cmomeB644
CmoCh04G012790	Watermelon (Charleston Gray)	cmowcgB606
CmoCh04G012790	Watermelon (Charleston Gray)	cmowcgB675
CmoCh04G012790	Watermelon (97103) v1	cmowmB645
CmoCh04G012790	Watermelon (97103) v1	cmowmB672