CmoCh04G012420 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G012420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 6301718 .. 6303872 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAAGCTGATGGCTCTGCCCCTAAAGAGAAAGAGATAAGAAAGTTTAGTATTTGAGTTTTGTTTTAAGGCTGTAAAAAGTGGGGAGGAGAAGAGCAGGTAGACACTGTTTAATGGCTTGATGATGATGAATTATCAGATCATGGTTTGTACAAATATTAGCTGGTGGACTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTCCTTTTTTTTTTTTTGTAGGTTTTGTTTCTTCTGATGATGTATGAGATTTTGGTTCATCTTTGTTATTTCGTCGACTTTTTTCGTTCTTGAAGTTTGAGCTGGCTGCTGGTTATAGTTGATAACGATTTCGTTTTTAGTTATGTTTTTATATGATGATTTGGATTCATTAAGAAAGTAGAACTAGAACTGATTGAAGGTAAGAGTGATTGGAAGCATAAAGTTTAGAAGCAAAACATAGATTTTGCCCATTGAATGACTTAAGGACAAAGCAAATTGATACACAAAGTCACTGAATGAGAAACAATTTTGATATGTGATTTTGGTTCCACAAAAGAAGAAAGAACAAAAAGGCCTGCAAATATTGAGTAGATTGGGCAAATCCCATAATCAGCCTTTCCCACGAACAAAAGCTTAGTTTAGAAAGCTCCTCTGGTAATGGCATCTTCATTGGCATTGCCAAGAGCAGCTTCATTCAAGTACTTGTCAGCCAATTGCACCCTCTTCACATTCTCTTGTTCTTGAACCAACATGTTACCATACTCCAGCAGCTTTTCCAGTGTCATTGCTGGCTGCTCGAACTTCGGCGGTGGGTCTTTCGAGTTCACCAGCTTCTTCCCTACGTCCTGGACTCCAACTCCAATGATCCACTTCCTTACTTCGTCATCGTACACTCTCGCCCTCAGTGCCCCAAAGAAATCTGTCCAACAAAACAGGAAAACGGGTTAAGTATGCCTACTTGTAGTTCGAGCTTTGTATTTTAAGTTTAGAAACTGACCGATGGATTGGCCTGGGAAGGTGTCGACCAACTTGACAATGTCCTCATCGGCGACTTTGTCAGTGCGGAAAATACCTTTGCAGACACCGATACGGTCCTCTCTAGTAGGAGCCCAGTAGAATTTCTCCATACGACCGTCACGAATGAGAGGAGCGTAGAGAGTGGAGAAATCGTTACCAGTGACGATGATTGGGACTCGAGGGTTATCCTCCTTGTTGTACATTCCAGGGAGCTGGACGTTGGTCGGGTTGTCAGCGATGTTCATGAGGGTGGCGTTAACCATCTGATTGTTGACAGTGTACTGAGTGGTGCCACCAAGACGACCTGCACCAGCGTCCAGATCATTGATGAAGAGGCAAGACATTTTTCCCTTCTTGATTATGTCAGCCGCCTCACGGTACCTTTGACGGATCAACTTAGCCGGCTCTCCGGCGTTGCCACTTTCCAGCTCTCCGGCGCTCATCATGATTGGGCTGTGGCAACAAAATAA

mRNA sequence

ATGAACAAAGCTGATGGCTCTGCCCCTAAAGAGAAAGAGATAAGAAAGTTTAGTTTTGTTTCTTCTGATGATAAACTGACCGATGGATTGGCCTGGGAAGGTGTCGACCAACTTGACAATGTCCTCATCGGCGACTTTGTCAGTGCGGAAAATACCTTTGCAGACACCGATACGGTCCTCTCTAGTAGGAGCCCAGTAGAATTTCTCCATACGACCGTCACGAATGAGAGGAGCGTAGAGAGTGGAGAAATCGTTACCAGTGACGATGATTGGGACTCGAGGGTTATCCTCCTTGTTGTACATTCCAGGGAGCTGGACGTTGGTCGGGTTGTCAGCGATGTTCATGAGGGTGGCGTTAACCATCTGATTGTTGACAGTGTACTGAGTGGTGCCACCAAGACGACCTGCACCAGCGTCCAGATCATTGATGAAGAGGCAAGACATTTTTCCCTTCTTGATTATGTCAGCCGCCTCACGGTACCTTTGACGGATCAACTTAGCCGGCTCTCCGGCGTTGCCACTTTCCAGCTCTCCGGCGCTCATCATGATTGGGCTGTGGCAACAAAATAA

Coding sequence (CDS)

ATGAACAAAGCTGATGGCTCTGCCCCTAAAGAGAAAGAGATAAGAAAGTTTAGTTTTGTTTCTTCTGATGATAAACTGACCGATGGATTGGCCTGGGAAGGTGTCGACCAACTTGACAATGTCCTCATCGGCGACTTTGTCAGTGCGGAAAATACCTTTGCAGACACCGATACGGTCCTCTCTAGTAGGAGCCCAGTAGAATTTCTCCATACGACCGTCACGAATGAGAGGAGCGTAGAGAGTGGAGAAATCGTTACCAGTGACGATGATTGGGACTCGAGGGTTATCCTCCTTGTTGTACATTCCAGGGAGCTGGACGTTGGTCGGGTTGTCAGCGATGTTCATGAGGGTGGCGTTAACCATCTGATTGTTGACAGTGTACTGAGTGGTGCCACCAAGACGACCTGCACCAGCGTCCAGATCATTGATGAAGAGGCAAGACATTTTTCCCTTCTTGATTATGTCAGCCGCCTCACGGTACCTTTGACGGATCAACTTAGCCGGCTCTCCGGCGTTGCCACTTTCCAGCTCTCCGGCGCTCATCATGATTGGGCTGTGGCAACAAAATAA
Homology
[Close]
BLAST of CmoCh04G012420 vs. TrEMBL
Match: A0A103Y6F2_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_018324 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 59/116 (50.86%), Postives = 87/116 (75.00%), Query Frame = 1 

Query: 45  DFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRE 104
           + VS+ENT  +T++V +SR PVE LHTTVTN+R ++S ++VT D++  SRV+L +VH+R+
Sbjct: 64  NIVSSENTSTNTNSVFASRRPVELLHTTVTNKRGIQSRKVVTRDNNRHSRVLLFIVHARK 123

Query: 105 LDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQIIDEEARHFSLLDYVSRLTV 161
           L+VG V+S+VH+  VNHL+V SVLS +   T T ++I+DE+  HF L DY+  L V
Sbjct: 124 LNVGWVISNVHKRSVNHLVVHSVLSRSIHPTSTCIEIVDEQHTHFPLTDYICCLAV 179

[Close]
BLAST of CmoCh04G012420 vs. TrEMBL
Match: A0A124SGN3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_014683 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 100 VHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQIIDEEARHFSLLD 154
           + S  LDVG V+ DVHEGGV+HL+VD VL G+T ++C+ V+I+DEEA HF L +
Sbjct: 30  IRSSLLDVGGVIGDVHEGGVHHLVVDGVLGGSTHSSCSGVKIVDEEAAHFPLFN 83

[Close]
BLAST of CmoCh04G012420 vs. NCBI nr
Match: gi|697114656|ref|XP_009611242.1| (PREDICTED: uncharacterized protein LOC104104787 [Nicotiana tomentosiformis])

HSP 1 Score: 160.2 bits (404), Expect = 3.5e-36
Identity = 78/156 (50.00%), Postives = 112/156 (71.79%), Query Frame = 1 

Query: 30  LAWEGVDQLDNVLIGDFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDD 89
           L+ EG+D L N  +   V  ENT A+T+++  S  P+E LHTT+T++RS++ GE+VTSD+
Sbjct: 31  LSREGIDNLYNSFLRHVVGPENTLANTNSIFPSWCPIELLHTTITDKRSIQCGEVVTSDN 90

Query: 90  DWDSRVILLVVHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQIIDEEARHF 149
           + D  V+LLVVH+ ELD+ RV+SDVHE G++HL+VDSVL  +T +T + ++I+DEEA H 
Sbjct: 91  NGDPGVLLLVVHTGELDICRVISDVHESGIHHLVVDSVLGSSTHSTSSCIEIVDEEATHV 150

Query: 150 SLLDYVSRLTVPLTDQLSRLSGVATFQLSGAHHDWA 186
           S  D     +VPL +Q  RLS ++TFQ SG HH+ A
Sbjct: 151 SFPDDFCCFSVPLPNQFCRLSCISTFQFSGTHHNRA 186

[Close]
BLAST of CmoCh04G012420 vs. NCBI nr
Match: gi|976918175|gb|KVI03372.1| (hypothetical protein Ccrd_018324 [Cynara cardunculus var. scolymus])

HSP 1 Score: 120.9 bits (302), Expect = 2.3e-24
Identity = 59/116 (50.86%), Postives = 87/116 (75.00%), Query Frame = 1 

Query: 45  DFVSAENTFADTDTVLSSRSPVEFLHTTVTNERSVESGEIVTSDDDWDSRVILLVVHSRE 104
           + VS+ENT  +T++V +SR PVE LHTTVTN+R ++S ++VT D++  SRV+L +VH+R+
Sbjct: 64  NIVSSENTSTNTNSVFASRRPVELLHTTVTNKRGIQSRKVVTRDNNRHSRVLLFIVHARK 123

Query: 105 LDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQIIDEEARHFSLLDYVSRLTV 161
           L+VG V+S+VH+  VNHL+V SVLS +   T T ++I+DE+  HF L DY+  L V
Sbjct: 124 LNVGWVISNVHKRSVNHLVVHSVLSRSIHPTSTCIEIVDEQHTHFPLTDYICCLAV 179

[Close]
BLAST of CmoCh04G012420 vs. NCBI nr
Match: gi|976922580|gb|KVI06958.1| (hypothetical protein Ccrd_014683 [Cynara cardunculus var. scolymus])

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 100 VHSRELDVGRVVSDVHEGGVNHLIVDSVLSGATKTTCTSVQIIDEEARHFSLLD 154
           + S  LDVG V+ DVHEGGV+HL+VD VL G+T ++C+ V+I+DEEA HF L +
Sbjct: 30  IRSSLLDVGGVIGDVHEGGVHHLVVDGVLGGSTHSSCSGVKIVDEEAAHFPLFN 83

The following BLAST results are available for this feature:
BLAST of CmoCh04G012420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G012420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A103Y6F2_CYNCS1.6e-2450.86Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_018324 PE=4 ... [more]
A0A124SGN3_CYNCS1.9e-0957.41Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_014683 PE=4 ... [more]
BLAST of CmoCh04G012420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G012420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|697114656|ref|XP_009611242.1|3.5e-3650.00PREDICTED: uncharacterized protein LOC104104787 [Nicotiana tomentosiformis][more]
gi|976918175|gb|KVI03372.1|2.3e-2450.86hypothetical protein Ccrd_018324 [Cynara cardunculus var. scolymus][more]
gi|976922580|gb|KVI06958.1|2.8e-0957.41hypothetical protein Ccrd_014683 [Cynara cardunculus var. scolymus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G012420.1CmoCh04G012420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G012420Cucurbita moschata (Rifu)cmocmoB266
CmoCh04G012420Cucurbita moschata (Rifu)cmocmoB368
CmoCh04G012420Cucurbita moschata (Rifu)cmocmoB450
CmoCh04G012420Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G012420Cucurbita moschata (Rifu)cmocmoB466
CmoCh04G012420Cucumber (Gy14) v1cgycmoB0372
CmoCh04G012420Cucumber (Gy14) v1cgycmoB0475
CmoCh04G012420Cucurbita maxima (Rimu)cmacmoB313
CmoCh04G012420Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G012420Cucurbita maxima (Rimu)cmacmoB730
CmoCh04G012420Wild cucumber (PI 183967)cmocpiB746
CmoCh04G012420Wild cucumber (PI 183967)cmocpiB773
CmoCh04G012420Cucumber (Chinese Long) v2cmocuB736
CmoCh04G012420Cucumber (Chinese Long) v2cmocuB764
CmoCh04G012420Melon (DHL92) v3.5.1cmomeB644
CmoCh04G012420Melon (DHL92) v3.5.1cmomeB675
CmoCh04G012420Melon (DHL92) v3.5.1cmomeB678
CmoCh04G012420Watermelon (Charleston Gray)cmowcgB625
CmoCh04G012420Watermelon (Charleston Gray)cmowcgB675
CmoCh04G012420Watermelon (97103) v1cmowmB668
CmoCh04G012420Watermelon (97103) v1cmowmB672
CmoCh04G012420Watermelon (97103) v1cmowmB734
CmoCh04G012420Cucurbita pepo (Zucchini)cmocpeB660
CmoCh04G012420Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G012420Cucurbita pepo (Zucchini)cmocpeB675
CmoCh04G012420Cucurbita pepo (Zucchini)cmocpeB706
CmoCh04G012420Cucurbita pepo (Zucchini)cmocpeB711
CmoCh04G012420Bottle gourd (USVL1VR-Ls)cmolsiB620
CmoCh04G012420Bottle gourd (USVL1VR-Ls)cmolsiB648
CmoCh04G012420Bottle gourd (USVL1VR-Ls)cmolsiB653
CmoCh04G012420Bottle gourd (USVL1VR-Ls)cmolsiB669
CmoCh04G012420Cucumber (Gy14) v2cgybcmoB387
CmoCh04G012420Cucumber (Gy14) v2cgybcmoB530
CmoCh04G012420Cucumber (Gy14) v2cgybcmoB651
CmoCh04G012420Cucumber (Gy14) v2cgybcmoB814
CmoCh04G012420Cucumber (Gy14) v2cgybcmoB820
CmoCh04G012420Melon (DHL92) v3.6.1cmomedB734
CmoCh04G012420Melon (DHL92) v3.6.1cmomedB764
CmoCh04G012420Melon (DHL92) v3.6.1cmomedB767
CmoCh04G012420Melon (DHL92) v3.6.1cmomedB799
CmoCh04G012420Silver-seed gourdcarcmoB0124
CmoCh04G012420Silver-seed gourdcarcmoB0371
CmoCh04G012420Silver-seed gourdcarcmoB0923
CmoCh04G012420Cucumber (Chinese Long) v3cmocucB0805
CmoCh04G012420Cucumber (Chinese Long) v3cmocucB0815
CmoCh04G012420Cucumber (Chinese Long) v3cmocucB0840
CmoCh04G012420Cucumber (Chinese Long) v3cmocucB0872
CmoCh04G012420Cucumber (Chinese Long) v3cmocucB0903
CmoCh04G012420Watermelon (97103) v2cmowmbB692
CmoCh04G012420Watermelon (97103) v2cmowmbB700
CmoCh04G012420Watermelon (97103) v2cmowmbB715
CmoCh04G012420Watermelon (97103) v2cmowmbB725
CmoCh04G012420Watermelon (97103) v2cmowmbB754
CmoCh04G012420Wax gourdcmowgoB0820
CmoCh04G012420Wax gourdcmowgoB0838
CmoCh04G012420Wax gourdcmowgoB0860
CmoCh04G012420Wax gourdcmowgoB0875
CmoCh04G012420Wax gourdcmowgoB0883