CmoCh04G011080 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G011080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Tryptophan--tRNA ligase
Location	Cmo_Chr04 : 5647317 .. 5650640 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATATGCTTGCCAATCTTGTAACTTATTTGTTAACTAGTATGTTCATTTCATCCAATACTCTTACAATGACATTAATTTGTCTTTTCTTTTGTTGGGGATTATGTTTCTTTTCTTCAGATAAACAAATATGCGTTCTCTGGTGGGCAAGATTCCATAGAAAAGCACAGATTATATGGTGCTAATCTCGAGGTACAAACTTTTTTCGTTGTATCATAAAGTTACATTTTTCATGCTATATTAGATTTTACTCATGATATATGACTTAAAGTAATAAATAAGGAACTAGACCAGTTTGATTGTGTATTTTGTTTTCTGTTTATTTGAAGCTTAATATACTAGTTCGTAATAAAGAAGCATTTTTTATATCAAGACCCAGATACAACGTGGCATAGGCTTACTCAAACACATGTTATTATCTGTTTTCAAGTATATTTGTATGCTGCCCTGTATATTTTTAAATCGTAAGGTTATTCCCAGAAGTATGGTATTGAAGGGTAGGAATTCTAGTATTTGTAGTAGTAAGGATGAGAGATCTTTCAATTCTGAGCAGGACTGAAAAGTTTGGAAGGGAGATTCTTTAGGTTCTCCAGTAATTCCGAATTTCTTTGCTTGATAGGTCCAGTGGAAGTCTAAAGAAAGCTGATGTTTTTCTTTGCTTTTCATTGTGGAATTAGCACTAATTACAGGATTAAACAGATTAGTACTAATATTCTCCTTCTAACCTAATTGATGTGCCCTTTGCAAGAGTTCTTCCAAAACTATAAATAACATATTCATTGGCTCTGCTCTCATGACTTCTTGTTGGTGAAATCTTTTTATACCTTTTGGTTTGGAGTTAGCTTTGTACTCCCTAACTCAGCACAAGGTTTGGTGTCTCTTCGACGCCATCCTCAGGATGGAAACCAAAGTTCTTCTGTCTCTTTCTTTTTTACCTCCTTGAAATTTACGTATATATTTAACTTTTTTCCCTATTGAATTCTTAGTTTCTTATCATAAAAGTACTTGAAAGAAGGTTCAATGTTGTTCAAGGTTCAAATTTCATTATCGTTATTGTTTTTGTTTGTCCGTGCTATGCATTGATACATTCACGTTTTGTCCCCCTGCTTCCAAGACTGTAGTCAACATTCCAGTAGGGTGTCTGAGAAGCAAATAGGAACTTGAAAATAAAGATCATGCAAAATTCTAATGTGATTTTTGTTAATTCTACCATAAACTATTCAGGTGGATATACCCATCAAATATTTGAACTTTTTCCTGGAAGACGATGCTGAACTTGAACATATAACAAAGGTGAGACTGCTGGTTCTATGATGGAGTTGATATTTTAACGATTCCTTTTTCCCATCTCTACAATGTTTTGGCCAACTAGGGTAAAATAAAATAATTTTTATTTCGTTCTTTCTCGCTTCAGGAGTATGGTGCTGGACGCATGCTAACAGGTGAAGTGAAACAGCGCCTTATACAAGTATTAACTGAAATTGTAGAAAGACATCGTAGAGCTCGGGCTGCTGTGACAGATGAGGTAAGTTTGTTGCATTCTATGTGAGGCATCCTCAAGTAGCTCGTCTACGTCCATATCATAGCAATTCATCCTTAATCTTGACTGATACTATCGTTATTACATTTTTAATCTTTGGGATGGCTATAATAATTGTTGATAACATTATGCTTATATATGAAGAAAAATCTTTATTTTTTTCAACCAGAAACAACTTCTCATTCTGTGATAAGTTCAAGGGATACAAGCTTTCAAAGGGAGTGAAAGAGAAAAATTAAAAACGACAAATACACCCATTTAGAGAACAACCATGAACAAAAACTTTTCATAGACCAAACAAAACACACCCCTACCGAAAATGACTCTATCATTGACTTTTGCTACCATTTTGAGAAACTTGAGAAAACTGGGGAGGGTATTTCAAAACTGTTGATATAGCTTTTACTTTGAACTTCTTAGAAATTGTGGAGTTAGCATCATTGACCTCTTGTTTTTATTGGAGAAGAATATCTAACTTCTTTTGAAGATATTACATTCTGCAAAGAACCATTTCATAACGAATTAATTCCTGCTGTCCATCAAGTTATGCGATCCAAACAGAAAGTTTATCCTATAAACAGAATTTGGCCCCAAAAAGAAGCTTTAATAAGCAAGGTACAGAGGAATGCATAAGTGCATAAGCAAGGTACGAAAGATTGCACTAGAAGACTAAATGAGGAGAAAATACACAACCCTTAAAAGAATAAGTCGATGAAAGAATGATCATTAAACTTTGAGGGAAAAATAGTATTGCAATAATAAGATGATGACATGTGTAAGAAAACATTGTTTTTGTTCCAGATTGTAGGGGAAAGTGATTAACGCTTAAGAATTAATAAAAATAAATAAAAAGAATTAGGAAGTAAGATGCTGAGGCGCACGCCACTAGTGCTGAGGCTTGTGCCTCAAGGGTGCACGCCACAAGTGCCGAGGCTTGTGCCTCAAGGGTGCACACCACAAGTGCTGAGGCGTGTCCTCAAGCGCGCTTCAGGTGCAGGGGCTGTGTCCTCAAGTACTTGGATAATTATATAATAGACAAGCAATATAAAGAAACCAACAAAATCAGCATTCCAAAGCTAAAGCATGAGTTTAAGCATAAATATAACCAGCTTATGCTCTTGAGATTTGAACTACAAAAGAGGCGAGACAGAAAGGATTTGCTGTCCTCTGTTTCCTATCAAGAATATTCTTAAGCATTGAATTGTTAGACGGCCTCAGTTGAATGCATGAAAAATTAGAACTACAAGATTTGGCTGCTATGGCCTTTACTTATTGTTGTGTTTCTTGTTCAGATGGTTGATGCGTTTATGGCAGTCAGACCCCTTCCTAACATGTTCGACTGAAGAAGTCATTCTTTGAACCACTATTTATCATTGAATTCAGGGGCCTACATTGGATACAACCAATGGGGCAGGGCGGGGCGGGGGCTCGTGCCATGACTCTCTACTCAGATTATTTATCAGTCAATCCCCCAAATGTATCTGAACTTAAAAAAACCAAGAAAACTATGTTTTGTAGAACGCTGTTAGGTTAGAGATTTTCAAGTCCAAAGCTTGATGAGTGAAGATGGTCAAATTGAGATGACTTGTAGTAGGTGATATTTGTAGGTCTTTGTTTTGTTTTGTCTTGTTTTTTCTTTTTTAAAATTAAAATTTTGACTATTCCTACGGTTTTTATTCAAACAAGAAACTACCTACTCTGGTATTCAAATTTTGTCTTATTTTCTCACTTCATTTATTTTATGTTAAGTTTTAATAATTGTATTAAAAAAAGTCGTAAATAG

mRNA sequence

ATGTATATGCTTGCCAATCTTATAAACAAATATGCGTTCTCTGGTGGGCAAGATTCCATAGAAAAGCACAGATTATATGGTGCTAATCTCGAGGTGGATATACCCATCAAATATTTGAACTTTTTCCTGGAAGACGATGCTGAACTTGAACATATAACAAAGGAGTATGGTGCTGGACGCATGCTAACAGGTGAAGTGAAACAGCGCCTTATACAAGTATTAACTGAAATTGTAGAAAGACATCGTAGAGCTCGGGCTGCTGTGACAGATGAGATGGTTGATGCGTTTATGGCAGTCAGACCCCTTCCTAACATGTTCGACTGAAGAAGTCATTCTTTGAACCACTATTTATCATTGAATTCAGGGGCCTACATTGGATACAACCAATGGGGCAGGGCGGGGCGGGGGCTCGTGCCATGACTCTCTACTCAGATTATTTATCAGTCAATCCCCCAAATGTATCTGAACTTAAAAAAACCAAGAAAACTATGTTTTGTAGAACGCTGTTAGGTTAGAGATTTTCAAGTCCAAAGCTTGATGAGTGAAGATGGTCAAATTGAGATGACTTGTAGTAGGTGATATTTGTAGGTCTTTGTTTTGTTTTGTCTTGTTTTTTCTTTTTTAAAATTAAAATTTTGACTATTCCTACGGTTTTTATTCAAACAAGAAACTACCTACTCTGGTATTCAAATTTTGTCTTATTTTCTCACTTCATTTATTTTATGTTAAGTTTTAATAATTGTATTAAAAAAAGTCGTAAATAG

Coding sequence (CDS)

ATGTATATGCTTGCCAATCTTATAAACAAATATGCGTTCTCTGGTGGGCAAGATTCCATAGAAAAGCACAGATTATATGGTGCTAATCTCGAGGTGGATATACCCATCAAATATTTGAACTTTTTCCTGGAAGACGATGCTGAACTTGAACATATAACAAAGGAGTATGGTGCTGGACGCATGCTAACAGGTGAAGTGAAACAGCGCCTTATACAAGTATTAACTGAAATTGTAGAAAGACATCGTAGAGCTCGGGCTGCTGTGACAGATGAGATGGTTGATGCGTTTATGGCAGTCAGACCCCTTCCTAACATGTTCGACTGA

Homology

[Close]

BLAST of CmoCh04G011080 vs. Swiss-Prot
Match: SYWC_ARATH (Tryptophan--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At3g04600 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.2e-45
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 1


Query: 4   LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLT 63
           + N IN+YAFSGGQDSIEKHR  GANLEVDIP+KYL+FFLEDD+ELEHI KEYG GRMLT
Sbjct: 299 IKNKINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKEYGEGRMLT 358

Query: 64  GEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 108
           GEVK+RL +VLTEIVERHRRARAAVTDEMVDAFMAVRPLP+MF+
Sbjct: 359 GEVKKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

[Close]

BLAST of CmoCh04G011080 vs. Swiss-Prot
Match: SYWC_RABIT (Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus GN=WARS PE=2 SV=3)

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-24
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = 1


Query: 8   INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVK 67
           +NK+AFSGG+D+IE+HR +G N +VD+   YL FFLEDD +LE I K+Y +G MLTGE+K
Sbjct: 376 VNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYSSGAMLTGELK 435

Query: 68  QRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL 103
           + LI VL  +V  H+  R  VTDEMV  FM  R L
Sbjct: 436 KELIDVLQPLVAEHQARRKEVTDEMVKEFMTPRQL 470

[Close]

BLAST of CmoCh04G011080 vs. Swiss-Prot
Match: SYWC_RAT (Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-23
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1


Query: 8   INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVK 67
           +NK+AFSGG+D++E+HR +G N EVD+   YL FFLEDD  LE I K+Y +G MLTGE+K
Sbjct: 376 VNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKDYTSGAMLTGELK 435

Query: 68  QRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL 103
           + LI VL  ++  H+  R AVT+E V  FMA R L
Sbjct: 436 KTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470

[Close]

BLAST of CmoCh04G011080 vs. Swiss-Prot
Match: SYWC_HUMAN (Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-23
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 1


Query: 8   INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVK 67
           +NK+AFSGG+D+IE+HR +G N +VD+   YL FFLEDD +LE I K+Y +G MLTGE+K
Sbjct: 372 VNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELK 431

Query: 68  QRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL 103
           + LI+VL  ++  H+  R  VTDE+V  FM  R L
Sbjct: 432 KALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466

[Close]

BLAST of CmoCh04G011080 vs. Swiss-Prot
Match: SYWC_PONAB (Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-23
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 1


Query: 8   INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVK 67
           +NK+AFSGG+D+IE+HR +G N +VD+   YL FFLEDD +LE I K+Y +G MLTGE+K
Sbjct: 373 VNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELK 432

Query: 68  QRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPL 103
           + LI+VL  ++  H+  R  VTDE+V  FM  R L
Sbjct: 433 KALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 467

[Close]

BLAST of CmoCh04G011080 vs. TrEMBL
Match: A0A0A0KJ91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G023880 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-48
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 1


Query: 4   LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLT 63
           + N INKYAFSGGQDSIEKHRLYGANLEVDIP KYLNFFL+DDAELEHITKEYGAGRMLT
Sbjct: 302 IKNKINKYAFSGGQDSIEKHRLYGANLEVDIPTKYLNFFLDDDAELEHITKEYGAGRMLT 361

Query: 64  GEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 108
           GEVKQRLIQVLTE+VERHRRARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 362 GEVKQRLIQVLTEMVERHRRARAAVTDEMVDAFMAVRPLPNMFD 405

[Close]

BLAST of CmoCh04G011080 vs. TrEMBL
Match: A0A061GVL2_THECC (Nucleotidylyl transferase superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_041147 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.8e-45
Identity = 91/100 (91.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 8   INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVK 67
           +NK+AF+GGQ+SIEKHR YGANLEVDIPIKYLNFFLEDDAELEHI KEYGAGRMLTGEVK
Sbjct: 302 VNKHAFTGGQESIEKHRQYGANLEVDIPIKYLNFFLEDDAELEHIKKEYGAGRMLTGEVK 361

Query: 68  QRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 108
           +RLI+VLTE+VERHRRARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 362 KRLIEVLTELVERHRRARAAVTDEMVDAFMAVRPLPNMFD 401

[Close]

BLAST of CmoCh04G011080 vs. TrEMBL
Match: A0A0D2SW54_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G118600 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.6e-45
Identity = 91/100 (91.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 8   INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVK 67
           +NK+AF+GGQ++IEKHR YGANLEVDIPIKYLNFFLEDDAELEHI KEYGAGRMLTGEVK
Sbjct: 302 VNKHAFTGGQETIEKHRQYGANLEVDIPIKYLNFFLEDDAELEHIKKEYGAGRMLTGEVK 361

Query: 68  QRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 108
           +RLI+VLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 362 KRLIEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 401

[Close]

BLAST of CmoCh04G011080 vs. TrEMBL
Match: A0A0B0NGP7_GOSAR (Tryptophan--tRNA ligase, cytoplasmic OS=Gossypium arboreum GN=F383_04677 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.6e-45
Identity = 91/100 (91.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 8   INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVK 67
           +NK+AF+GGQ++IEKHR YGANLEVDIPIKYLNFFLEDDAELEHI KEYGAGRMLTGEVK
Sbjct: 302 VNKHAFTGGQETIEKHRQYGANLEVDIPIKYLNFFLEDDAELEHIKKEYGAGRMLTGEVK 361

Query: 68  QRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 108
           +RLI+VLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 362 KRLIEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 401

[Close]

BLAST of CmoCh04G011080 vs. TrEMBL
Match: V7ALE4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G046300g PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.2e-44
Identity = 89/104 (85.58%), Postives = 98/104 (94.23%), Query Frame = 1


Query: 4   LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLT 63
           + N +NK+AFSGGQDSIEKHR  GANLEVDIPIKYL+FFLEDDAELEHI KEYG GRMLT
Sbjct: 299 IKNKVNKHAFSGGQDSIEKHRQLGANLEVDIPIKYLSFFLEDDAELEHIKKEYGEGRMLT 358

Query: 64  GEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 108
           GEVKQRL+QVLTE+VERHRRARA+VT+EMVDAFMAVRPLP+MFD
Sbjct: 359 GEVKQRLVQVLTEVVERHRRARASVTEEMVDAFMAVRPLPHMFD 402

[Close]

BLAST of CmoCh04G011080 vs. TAIR10
Match: AT3G04600.1 (AT3G04600.1 Nucleotidylyl transferase superfamily protein)

HSP 1 Score: 181.4 bits (459), Expect = 2.9e-46
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 1


Query: 4   LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLT 63
           + N IN+YAFSGGQDSIEKHR  GANLEVDIP+KYL+FFLEDD+ELEHI KEYG GRMLT
Sbjct: 299 IKNKINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKEYGEGRMLT 358

Query: 64  GEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 108
           GEVK+RL +VLTEIVERHRRARAAVTDEMVDAFMAVRPLP+MF+
Sbjct: 359 GEVKKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402

[Close]

BLAST of CmoCh04G011080 vs. NCBI nr
Match: gi|449449024|ref|XP_004142265.1| (PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-48
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 1


Query: 4   LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLT 63
           + N INKYAFSGGQDSIEKHRLYGANLEVDIP KYLNFFL+DDAELEHITKEYGAGRMLT
Sbjct: 302 IKNKINKYAFSGGQDSIEKHRLYGANLEVDIPTKYLNFFLDDDAELEHITKEYGAGRMLT 361

Query: 64  GEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 108
           GEVKQRLIQVLTE+VERHRRARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 362 GEVKQRLIQVLTEMVERHRRARAAVTDEMVDAFMAVRPLPNMFD 405

[Close]

BLAST of CmoCh04G011080 vs. NCBI nr
Match: gi|659103000|ref|XP_008452422.1| (PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 5.0e-48
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 1


Query: 4   LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLT 63
           + N INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFL+DDAELE ITKEYGAGRMLT
Sbjct: 302 IKNKINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLDDDAELERITKEYGAGRMLT 361

Query: 64  GEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 108
           GEVKQRLIQVLTE+VERHRRARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 362 GEVKQRLIQVLTEMVERHRRARAAVTDEMVDAFMAVRPLPNMFD 405

[Close]

BLAST of CmoCh04G011080 vs. NCBI nr
Match: gi|590585870|ref|XP_007015548.1| (Nucleotidylyl transferase superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 189.1 bits (479), Expect = 4.0e-45
Identity = 91/100 (91.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 8   INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVK 67
           +NK+AF+GGQ+SIEKHR YGANLEVDIPIKYLNFFLEDDAELEHI KEYGAGRMLTGEVK
Sbjct: 302 VNKHAFTGGQESIEKHRQYGANLEVDIPIKYLNFFLEDDAELEHIKKEYGAGRMLTGEVK 361

Query: 68  QRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 108
           +RLI+VLTE+VERHRRARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 362 KRLIEVLTELVERHRRARAAVTDEMVDAFMAVRPLPNMFD 401

[Close]

BLAST of CmoCh04G011080 vs. NCBI nr
Match: gi|823172703|ref|XP_012485210.1| (PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Gossypium raimondii])

HSP 1 Score: 188.7 bits (478), Expect = 5.2e-45
Identity = 91/100 (91.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 8   INKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLTGEVK 67
           +NK+AF+GGQ++IEKHR YGANLEVDIPIKYLNFFLEDDAELEHI KEYGAGRMLTGEVK
Sbjct: 302 VNKHAFTGGQETIEKHRQYGANLEVDIPIKYLNFFLEDDAELEHIKKEYGAGRMLTGEVK 361

Query: 68  QRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 108
           +RLI+VLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 362 KRLIEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMFD 401

[Close]

BLAST of CmoCh04G011080 vs. NCBI nr
Match: gi|1012232187|ref|XP_015938673.1| (PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Arachis duranensis])

HSP 1 Score: 186.8 bits (473), Expect = 2.0e-44
Identity = 91/103 (88.35%), Postives = 98/103 (95.15%), Query Frame = 1


Query: 4   LANLINKYAFSGGQDSIEKHRLYGANLEVDIPIKYLNFFLEDDAELEHITKEYGAGRMLT 63
           + N +NK+AFSGGQDSIEKHR  GANLEVDIP+KYL+FFLEDDAELEHI KEYGAGRMLT
Sbjct: 309 IKNKVNKHAFSGGQDSIEKHRQLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGRMLT 368

Query: 64  GEVKQRLIQVLTEIVERHRRARAAVTDEMVDAFMAVRPLPNMF 107
           GEVKQRLIQVLTE+VERHRRARAAVTDEMVDAFMAVRPLP+MF
Sbjct: 369 GEVKQRLIQVLTELVERHRRARAAVTDEMVDAFMAVRPLPHMF 411

The following BLAST results are available for this feature:

BLAST of CmoCh04G011080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SYWC_ARATH	5.2e-45	84.62	Tryptophan--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At3g04600 PE=2 S...	[more]
SYWC_RABIT	3.8e-24	55.79	Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus GN=WARS PE=2 SV=3	[more]
SYWC_RAT	1.1e-23	54.74	Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars PE=1 SV=2	[more]
SYWC_HUMAN	1.9e-23	53.68	Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2	[more]
SYWC_PONAB	1.9e-23	53.68	Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2	[more]

BLAST of CmoCh04G011080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ91_CUCSA	1.6e-48	94.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G023880 PE=3 SV=1	[more]
A0A061GVL2_THECC	2.8e-45	91.00	Nucleotidylyl transferase superfamily protein isoform 1 OS=Theobroma cacao GN=TC...	[more]
A0A0D2SW54_GOSRA	3.6e-45	91.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G118600 PE=3 SV=1	[more]
A0A0B0NGP7_GOSAR	3.6e-45	91.00	Tryptophan--tRNA ligase, cytoplasmic OS=Gossypium arboreum GN=F383_04677 PE=3 SV...	[more]
V7ALE4_PHAVU	5.2e-44	85.58	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G046300g PE=3 SV=1	[more]

BLAST of CmoCh04G011080 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04600.1	2.9e-46	84.62	Nucleotidylyl transferase superfamily protein	[more]

BLAST of CmoCh04G011080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449024\|ref\|XP_004142265.1\|	2.2e-48	94.23	PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Cucumis sativus]	[more]
gi\|659103000\|ref\|XP_008452422.1\|	5.0e-48	94.23	PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Cucumis melo]	[more]
gi\|590585870\|ref\|XP_007015548.1\|	4.0e-45	91.00	Nucleotidylyl transferase superfamily protein isoform 1 [Theobroma cacao]	[more]
gi\|823172703\|ref\|XP_012485210.1\|	5.2e-45	91.00	PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Gossypium raimondii]	[more]
gi\|1012232187\|ref\|XP_015938673.1\|	2.0e-44	88.35	PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002306	Trp-tRNA-ligase

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0004830	tryptophan-tRNA ligase activity
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006436	tryptophanyl-tRNA aminoacylation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009165	nucleotide biosynthetic process
biological_process	GO:0006568	tryptophan metabolic process
biological_process	GO:0006436	tryptophanyl-tRNA aminoacylation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004830	tryptophan-tRNA ligase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G011080.1	CmoCh04G011080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002306	Tryptophan-tRNA ligase	PANTHER	PTHR10055	TRYPTOPHANYL-TRNA SYNTHETASE	coord: 8..102 score: 3.5
None	No IPR available	GENE3D	G3DSA:1.10.240.10		coord: 6..102 score: 1.7
None	No IPR available	PANTHER	PTHR10055:SF1	TRYPTOPHAN--TRNA LIGASE, CYTOPLASMIC	coord: 8..102 score: 3.5
None	No IPR available	unknown	SSF52374	Nucleotidylyl transferase	coord: 6..100 score: 1.69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G011080	Cucsa.174080	Cucumber (Gy14) v1	cgycmoB0495
CmoCh04G011080	CmaCh04G010370	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G011080	CmaCh04G000820	Cucurbita maxima (Rimu)	cmacmoB730
CmoCh04G011080	Csa5G023880	Cucumber (Chinese Long) v2	cmocuB725
CmoCh04G011080	MELO3C016671	Melon (DHL92) v3.5.1	cmomeB699
CmoCh04G011080	CSPI05G00630	Wild cucumber (PI 183967)	cmocpiB732
CmoCh04G011080	Cp4.1LG01g05860	Cucurbita pepo (Zucchini)	cmocpeB675
CmoCh04G011080	Cp4.1LG01g07310	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G011080	CsaV3_5G014470	Cucumber (Chinese Long) v3	cmocucB0857
CmoCh04G011080	Bhi07G000374	Wax gourd	cmowgoB0888
CmoCh04G011080	CsGy5G010890	Cucumber (Gy14) v2	cgybcmoB638
CmoCh04G011080	Carg27435	Silver-seed gourd	carcmoB1306
CmoCh04G011080	Carg00145	Silver-seed gourd	carcmoB0923

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G011080	CmoCh04G000800	Cucurbita moschata (Rifu)	cmocmoB464

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G011080	Watermelon (Charleston Gray)	cmowcgB675
CmoCh04G011080	Watermelon (97103) v1	cmowmB677
CmoCh04G011080	Bottle gourd (USVL1VR-Ls)	cmolsiB662
CmoCh04G011080	Melon (DHL92) v3.6.1	cmomedB793
CmoCh04G011080	Watermelon (97103) v2	cmowmbB754