CmoCh04G009880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G009880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cartilage matrix
Location	Cmo_Chr04 : 4984574 .. 4986823 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTGCGACTGCGCGCCACTTCCTGAAACACCTCCAAACCGTGCTACGGGAATTCAGATGAAATATGTACACCGTCCATTCCATCGACTCAATTCGAAAACTCCGCAAGTCAGACGGTCTGCAAACGTCCACAATGTAAATGGAGGTATTTTGAACGATGGGTTCAACGATGTAAATGGGTTCAACAATGGCCTGAAAATGGAGGTATTTTGAAGAAACTTTCAGAAGCCTCCAAACACAGAAATCGCTAATCTGGATTGCGAGTTTCTTTAACCCCACAAAAGTTTCAGCGTCCAAAAATGATGCCCATCAAGTCCTATGATCATTGGGCTTTTCTGGTATACTTTCTTGTTCTTGAATCATTTCATATTCTAGGATTCACTGGTTTTTTATTTTTTTGATTCTTATGGGAAAAAGGATATTTGATTGGTTAACTTCATACCCTCTTTCATATTTTGGTTTAATTTGTTAATATTATTTTTCGTTCTTTGTTTGCGTTCTTCCATTTTTCTTTTTTTTTTTTTGGATTTCTTGTGCAGAATTGATTGATTTTTCAATGTTTGATATCCTAGGTTTTCCATTTCGACCGCTGGTTTCTTGTGCAATTGATTATATTTGTTGTTTTCTGTTCATCAAATAATCCTGTCTATTCAAGTCACATTTCTCTTATTTTACTTGTGTTTGAGAATCAAGGGGGGAAGATAATGCCCAGTTATCCTGGAAATTGCTTCAGTTTTAACGATTCAGAATCTCAGATGAGAATCAGAATGCTTAGAGAGAGAAACGATGACCTTGCCTCATACATTTTCTACGTTTTTGTATTTGGGAATGATATTGATTTTAAAAATTAATCTTACAAAACCACGCATACTTGCACTTATTTCATAATGGGGCCGTATTTGTTCTTTTGGTGTGTAATTTCTGATTGAAACAGGAAGAAATTGAAGCACCCATGTGGGTTGATCTCACCTTAGAAGGGAAGTCCAAAAATCAGAACATGTGAGTATTTGATATAACTTGTGATGGTATATGTCAGATTAATATGCATTTCATGCCATTTTTTTCTTTTTAATTCCCCATATTCTCTTACTTTGATTGCAGTGATGATAAATGGTTCTGTACATACCACCCGTAAGCATCCTTGATTGTTTTTCCATTTGCAGAATAGATGTGAAACATTTCTTTTTCTTCATGATTTAGTTCTCTTTGTTTTCCTTAAAAACCAATGAACATGCCAGGGTCCACCAAACTTCCTCTCATGACCTGAAATCAGAATTTTCTCAGCTGTTTGAGGAAGCAAAGGCTTTAGATTTTGAATTATTGGTGTATTCTATTCCAAAAATTCTCACCTCTGTCTCAAGATCAAGAGGGAGAGATTTTGACAACAATAAATCGAAAGGTATCGGTCAGGATTTTGCAATGGACAAGCAAGTCATAGTTGAGGAGCTGAGTTCAGGATCAGCAGCCACTAAATGGAAGCCGAGGCCAAAGCCGAGCTTTACAGACTCAAAAAGAATCTTGAGTTCAGATCCAAGTTTGGTTTCTATTGCAACCTGTTTAACTGGAAATGCAATGCTAAATGTTTCAGCTACTGGTTCGAGTCCAGTGGGAAAGGAGCCAGCTGACAGCAGAACTGGTATCAGTCATCGACAACCGCATAAGCCAATGTTGGCAACAAGTCAAACATTGGGCCATTCTAGTAGACTTTTGTCAGATATGAGATGTCTCAGGAAAAGCTGTGTCATTAGTCAACAAGCATCAAGATTGGAGGATAATAGCCGTCAAAGGCAGTCAAGCGGCCATCACTCTTCTTTGAATAATTCAAGCGTATGCTCCTCTTTGAATCCTGGTTTTGGTGCCAAGAGTATCACCAACACTACTAGCTTTCCCAGGATGACTCAAGCAGCAATGAACAAAGACAAAGTTGCAAGCGTATGCTCAAGCACATTAATAATTCAAGTGGAAGATGCAAGTTCCAACACAAGGAGGGTCGGGAAACTCTATAATGATAAGCCAGTCCACCTCAAGCCTTCAAAACCAAAGGTAACTCCTGAATCAAACTTAAGGTTTTCTTGCAATCAATTTTCTTTCAGGGAGATGTGTTTAATCTTTTTTGTTTCTCATCAGATACTTCGTCCAAAAGTATCACTACTACAGAAAAAGGATGAGCGTAACACTTGTTTAAAGCCAAATAAACAGGATTTGGCTGGAACCGCTAGATGCAAAACCGTTGTAGCTGGAAAGTAG

mRNA sequence

ATGATTTGCGACTGCGCGCCACTTCCTGAAACACCTCCAAACCGTGCTACGGGAATTCAGATGAAATATGTACACCGTCCATTCCATCGACTCAATTCGAAAACTCCGCAAGTCAGACGGTCTGCAAACGTCCACAATGTAAATGGAGGTATTTTGAACGATGGGTTCAACGATGTAAATGGGTTCAACAATGGCCTGAAAATGGAGCGTCCAAAAATGATGCCCATCAAGTCCTATGATCATTGGGCTTTTCTGGAAGAAATTGAAGCACCCATGTGGGTTGATCTCACCTTAGAAGGGAAGTCCAAAAATCAGAACATTGATGATAAATGGTTCTGTACATACCACCCGGTCCACCAAACTTCCTCTCATGACCTGAAATCAGAATTTTCTCAGCTGTTTGAGGAAGCAAAGGCTTTAGATTTTGAATTATTGGTGTATTCTATTCCAAAAATTCTCACCTCTGTCTCAAGATCAAGAGGGAGAGATTTTGACAACAATAAATCGAAAGGTATCGGTCAGGATTTTGCAATGGACAAGCAAGTCATAGTTGAGGAGCTGAGTTCAGGATCAGCAGCCACTAAATGGAAGCCGAGGCCAAAGCCGAGCTTTACAGACTCAAAAAGAATCTTGAGTTCAGATCCAAGTTTGGTTTCTATTGCAACCTGTTTAACTGGAAATGCAATGCTAAATGTTTCAGCTACTGGTTCGAGTCCAGTGGGAAAGGAGCCAGCTGACAGCAGAACTGGTATCAGTCATCGACAACCGCATAAGCCAATGTTGGCAACAAGTCAAACATTGGGCCATTCTAGTAGACTTTTGTCAGATATGAGATGTCTCAGGAAAAGCTGTGTCATTAGTCAACAAGCATCAAGATTGGAGGATAATAGCCGTCAAAGGCAGTCAAGCGGCCATCACTCTTCTTTGAATAATTCAAGCGTATGCTCCTCTTTGAATCCTGGTTTTGGTGCCAAGAGTATCACCAACACTACTAGCTTTCCCAGGATGACTCAAGCAGCAATGAACAAAGACAAAGTTGCAAGCGTATGCTCAAGCACATTAATAATTCAAGTGGAAGATGCAAGTTCCAACACAAGGAGGGTCGGGAAACTCTATAATGATAAGCCAGTCCACCTCAAGCCTTCAAAACCAAAGATACTTCGTCCAAAAGTATCACTACTACAGAAAAAGGATGAGCGTAACACTTGTTTAAAGCCAAATAAACAGGATTTGGCTGGAACCGCTAGATGCAAAACCGTTGTAGCTGGAAAGTAG

Coding sequence (CDS)

ATGATTTGCGACTGCGCGCCACTTCCTGAAACACCTCCAAACCGTGCTACGGGAATTCAGATGAAATATGTACACCGTCCATTCCATCGACTCAATTCGAAAACTCCGCAAGTCAGACGGTCTGCAAACGTCCACAATGTAAATGGAGGTATTTTGAACGATGGGTTCAACGATGTAAATGGGTTCAACAATGGCCTGAAAATGGAGCGTCCAAAAATGATGCCCATCAAGTCCTATGATCATTGGGCTTTTCTGGAAGAAATTGAAGCACCCATGTGGGTTGATCTCACCTTAGAAGGGAAGTCCAAAAATCAGAACATTGATGATAAATGGTTCTGTACATACCACCCGGTCCACCAAACTTCCTCTCATGACCTGAAATCAGAATTTTCTCAGCTGTTTGAGGAAGCAAAGGCTTTAGATTTTGAATTATTGGTGTATTCTATTCCAAAAATTCTCACCTCTGTCTCAAGATCAAGAGGGAGAGATTTTGACAACAATAAATCGAAAGGTATCGGTCAGGATTTTGCAATGGACAAGCAAGTCATAGTTGAGGAGCTGAGTTCAGGATCAGCAGCCACTAAATGGAAGCCGAGGCCAAAGCCGAGCTTTACAGACTCAAAAAGAATCTTGAGTTCAGATCCAAGTTTGGTTTCTATTGCAACCTGTTTAACTGGAAATGCAATGCTAAATGTTTCAGCTACTGGTTCGAGTCCAGTGGGAAAGGAGCCAGCTGACAGCAGAACTGGTATCAGTCATCGACAACCGCATAAGCCAATGTTGGCAACAAGTCAAACATTGGGCCATTCTAGTAGACTTTTGTCAGATATGAGATGTCTCAGGAAAAGCTGTGTCATTAGTCAACAAGCATCAAGATTGGAGGATAATAGCCGTCAAAGGCAGTCAAGCGGCCATCACTCTTCTTTGAATAATTCAAGCGTATGCTCCTCTTTGAATCCTGGTTTTGGTGCCAAGAGTATCACCAACACTACTAGCTTTCCCAGGATGACTCAAGCAGCAATGAACAAAGACAAAGTTGCAAGCGTATGCTCAAGCACATTAATAATTCAAGTGGAAGATGCAAGTTCCAACACAAGGAGGGTCGGGAAACTCTATAATGATAAGCCAGTCCACCTCAAGCCTTCAAAACCAAAGATACTTCGTCCAAAAGTATCACTACTACAGAAAAAGGATGAGCGTAACACTTGTTTAAAGCCAAATAAACAGGATTTGGCTGGAACCGCTAGATGCAAAACCGTTGTAGCTGGAAAGTAG

Homology

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BLAST of CmoCh04G009880 vs. TrEMBL
Match: A0A0A0L7V1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099670 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.4e-37
Identity = 116/213 (54.46%), Postives = 137/213 (64.32%), Query Frame = 1


Query: 232 VSATGSSPVGKEPADSRT------GISHRQPHKPMLATSQTLGHSSRLLSDMR-CLRKSC 291
           V   GSS  GKE  DSRT      GI H+Q HKP   TSQ+L  SS+LL DMR  LRKSC
Sbjct: 183 VVVIGSSSEGKESVDSRTSSTIVSGIGHQQQHKPTEVTSQSLSSSSKLLLDMRRSLRKSC 242

Query: 292 VISQQASRLEDNSRQRQSSGHHSSLNNSSVCSSLNPGFGAKSITNTTS-----------F 351
             ++QASRLE N+ +RQSSG      NSS+ SSLNP FG+K+IT T+             
Sbjct: 243 A-TRQASRLEVNNCRRQSSGR-----NSSISSSLNPSFGSKNITKTSEHHLKNSQCVGGL 302

Query: 352 PRMTQAAMNKDKVASVCSSTLIIQVEDASSNTRRV-GKLYNDKPVHLKPSKPKILRPKVS 411
            RMTQA+MNK KV SV SSTL +Q+E  SSN+RRV GKL N  P   + SKPKILRPK S
Sbjct: 303 SRMTQASMNKSKVLSVLSSTLKVQLEGVSSNSRRVVGKLNNANP---EASKPKILRPKAS 362

Query: 412 LLQKKDERNTCLK-PNKQDLAGTARCKTVVAGK 425
           LL ++D +N+CL    K+ L  T RCKTV AGK
Sbjct: 363 LLLQRDNQNSCLNLKKKEGLERTGRCKTVEAGK 386

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BLAST of CmoCh04G009880 vs. TrEMBL
Match: B9N575_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41790g PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.1e-34
Identity = 133/375 (35.47%), Postives = 188/375 (50.13%), Query Frame = 1


Query: 73  MMPI-KSYDHWAFLEEIEAPMWVDLTLEGKSKNQNIDDKWFCTYHPVHQTSSHDLKSEFS 132
           M PI K+ DHWAFLEEIEAP+WVD  +E KS  Q++DD+WF T HP HQ SS  LK+ F+
Sbjct: 1   MDPINKARDHWAFLEEIEAPIWVDFLVEAKSNYQDVDDEWFRTSHPFHQCSSGQLKAAFA 60

Query: 133 QLFEEAKALDFELLVYSIPKILTSVSRSRGRDFDNNKSKGIGQDFAMDKQVIVEELSSGS 192
              E++ + DFE      P I +SVSRSRG+ + + K  G G D +M+KQ  V+ LS  S
Sbjct: 61  YSGEKSTSSDFECKGSFSPNIPSSVSRSRGKHYASKKWGGGGHDISMNKQHPVKVLSKSS 120

Query: 193 AATKW---KPRPKPSFTDSKRILSSDPSLVSIATCLTGNAMLNVSATGSSPVGKE----- 252
                   K +PK S  +SK    S  S+VS     T NA        S   G E     
Sbjct: 121 RVNSEPNDKIKPKLSLVNSKGTSRSKVSVVS-GKSFTRNAKETDLEAKSCQGGTESSLNS 180

Query: 253 ----PADSRTGI-----SHRQPHKPMLATSQTLGHSSRLLSDMRCLRKSCVISQQASRLE 312
                A+S T        H+   + +  +S+   H+S LLS +R   +   ++++ASR+E
Sbjct: 181 LVFKAAESNTSTVTSERDHQAKQRNLEVSSRGFDHASGLLSAVRNGLRKSFVTRKASRVE 240

Query: 313 DNSRQRQSSGHHSSLNNSSVCSSLNPGFGAKSIT--------NTTSFPRMTQAAMNKDKV 372
            N   +Q     SS + SS  SS NPG+ AKS T        ++ +  RMT+AA  K K 
Sbjct: 241 INDENKQLRDRKSSSSKSSWGSSSNPGYDAKSSTLAFKEQTPDSRNVARMTEAARKKTKD 300

Query: 373 ASVCSSTLIIQVEDASSNTRRVGKLYNDKPVHLKPSKPKILRPKVSLLQKKDERNTCLKP 422
           + + S    ++V++   N+R+ G     K   L+  K K+    + +    D R   L P
Sbjct: 301 SDM-SRASDVRVKEKVFNSRKGGISNVAKSASLEALKSKVQNQTLRVKALADHRGNELHP 360

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BLAST of CmoCh04G009880 vs. TrEMBL
Match: F6H2E5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g03670 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.6e-30
Identity = 127/342 (37.13%), Postives = 176/342 (51.46%), Query Frame = 1


Query: 77  KSYDHWAFLEEIEAPMWVDLTLEGKSKNQNIDDKWFCTYHPVHQTSSHDLKSEFSQLFEE 136
           K+ DHWAFLEE EAPMW DLTLE K+ NQ++           HQ SSH LKS FS   E 
Sbjct: 5   KTDDHWAFLEEFEAPMWADLTLEAKTNNQDV----------FHQFSSHQLKSAFSGSSEG 64

Query: 137 AKALDFELLVYSIPKILTSVSRSRGRDFDNNKSKGIGQDFAMDKQVIVEELSSGS----A 196
           ++ LDF+L   S PK+ +SVSRSRG+ + +         F+++KQ  V+ LS  +    +
Sbjct: 65  SENLDFDLHGPSSPKLPSSVSRSRGKHYRSRNWGKENGGFSLNKQHPVKSLSGKTSWVDS 124

Query: 197 ATKWKPRPKPSFTDSKRILSSDPSL---VSIATCLTGNAMLNVSATGS-----SPVGKEP 256
            +  + +PKPS  + K   SS  SL    S       N  + +S+ G      S V  + 
Sbjct: 125 GSSQEIKPKPSCGNLKGTCSSKTSLGCDSSSTRTSIPNYTIPISSFGDSKGRLSSVAIKA 184

Query: 257 ADSRTGIS-------HRQPHKPMLATSQTLGHSSRLLSDMR-CLRKSCVISQQASRLEDN 316
           ++S +  S       H+QP K +  +S   GH+S LLS MR  LRKSC  ++QASR+E N
Sbjct: 185 SESNSTTSTVTFEGTHQQPQKSLEVSSGPFGHTSGLLSVMRITLRKSCA-TRQASRVEIN 244

Query: 317 SRQRQSSGHHSSLNNSSVCSSLNPGFGAKSITNT-----------TSFPRMTQAAMNKDK 376
             Q QS G  SS   SSV SS NPG+  K  T T            +  R +Q A+N+ +
Sbjct: 245 KCQ-QSEGCKSSAGKSSVGSSSNPGYDVKDRTATEIRNRDRTPDSRNVMRTSQTAVNRGR 304

Query: 377 VASVCSSTLIIQVEDASSNTRRVGKLYNDKPVHLKPSKPKIL 388
            AS  S    I V+  ++N+R+ GK    K       K K++
Sbjct: 305 -ASTTSKASNILVDYRTNNSRKEGKRIVAKSTTKDAVKSKVV 333

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BLAST of CmoCh04G009880 vs. TrEMBL
Match: A0A061F7W8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_031307 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 131/367 (35.69%), Postives = 190/367 (51.77%), Query Frame = 1


Query: 80  DHWAFLEEIEAPMWVDLTLEGKSKNQNIDDKWFCTYHPVHQTSSHDLKSEFSQLFEEAKA 139
           DHWAFLEEIEAPMWVDLTLE K  +Q+ID  WF T H  H  SS  LKS FS+  E+   
Sbjct: 8   DHWAFLEEIEAPMWVDLTLEAKLNSQDIDGDWFQTSHLFHHCSSRKLKSAFSRSGEDGVN 67

Query: 140 LDFELLVYSIPKILTSVSRSRGRDFDNNKSKGIGQDFAMDK----QVIVEELSSGSAATK 199
            + +L+  S P +  SVSRSRG+D+ + K KG   D +++     +V+  + S   +   
Sbjct: 68  SELDLVGASSPTLPQSVSRSRGKDYRSKKWKGDCHDGSLNNIKPVKVLNGKFSRLDSGYG 127

Query: 200 WKPRPKPSFTDSKRILSSDPSLVSIATCLTGNAMLNVSATGSSPVGKEPADSRTGISHRQ 259
            + +PK SF   K   SS  SLVS  T        N  +T +S            +  +Q
Sbjct: 128 EEIKPKLSFVSLKGASSSKTSLVSEIT------ETNTRSTVTS----------ESVQQQQ 187

Query: 260 PHKPMLATSQTLGHSSRLLSDMR-CLRKSCVISQQASRLEDNSRQRQSSGHHSSLNNSSV 319
             K    +S+  G SS LL  +R  LRKSC I++ ASR+E N+ +R+S    SS + SSV
Sbjct: 188 QQKTFEVSSRGFGQSSGLLLSVRSSLRKSC-ITRPASRVEINADRRESRDRKSSSSKSSV 247

Query: 320 CSSLNPGFGAKSIT-----------NTTSFPRMTQAAMNKDKVASVCSSTLIIQVEDASS 379
            SS   G   K  +           ++ +  RMT+AA NK K +++C +T  ++ ++ + 
Sbjct: 248 GSSSFSGHDVKRSSIALIKRKEHTPDSRNVARMTEAAKNKVKPSNMC-NTSNVRGKEGNR 307

Query: 380 NTRRVGKLYNDKPVHLKPSKPK----ILRPKVSLLQKKDERNTCLKPNK-QDLAGTARCK 425
           N+R  G     KP   + +K K     LR K+S  Q  +E+ + +  +K +   G +R K
Sbjct: 308 NSRTGGLPTVAKPTCQEATKSKANSQTLRSKLS--QPLNEKKSLVAASKARKKVGVSRIK 354

[Close]

BLAST of CmoCh04G009880 vs. TrEMBL
Match: A0A067KS37_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00704 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.7e-29
Identity = 110/270 (40.74%), Postives = 152/270 (56.30%), Query Frame = 1


Query: 77  KSYDHWAFLEEIEAPMWVDLTLEGKSKNQNIDDKWFCTYHPVHQTSSHDLKSEFSQLFEE 136
           K  DHWAFLEEIEAP WVDLTLE KS  Q IDD WF T H  HQ SS +LK+ F+ + E 
Sbjct: 5   KKKDHWAFLEEIEAPTWVDLTLEAKSTYQEIDDGWFHTTHVFHQCSSQELKAAFAHVGEG 64

Query: 137 AKALDFELLVYSIPKILTSVSRSRGRDFDNNKSKGIGQDFAMDKQVIVEELSS----GSA 196
             + D  +   S PK+ +SVSRSRG+ +++NKS+    + +++KQ  V+ LS       +
Sbjct: 65  FMSSDIYMKAPSSPKLPSSVSRSRGKHYESNKSQD-DNNLSLNKQHPVKVLSGKPSRAHS 124

Query: 197 ATKWKPRPKPSFTDSKRILSSDPSLV--SIATCLTGNAMLNVSATGSSPVGKEPADSRTG 256
            +  + +PK SF +SK I  S  S V     T +  N    VS+ G S      A  ++G
Sbjct: 125 GSGEEIKPKLSFMNSKGISRSKRSFVLGKNLTEVKDNNFKAVSSYGHSEGSSSSAADKSG 184

Query: 257 ISH---------RQPHKPML-ATSQTLGHSSRLLSDMRCLRKSCVISQQASRLEDNSRQR 316
            S+         ++P +  L  +SQ LG+SS LLS MR   +    ++QASR++ N++ R
Sbjct: 185 ESNTSTVTSEGDQKPQRTNLEVSSQALGYSSGLLSAMRISLRKSYTTRQASRVDLNNK-R 244

Query: 317 QSSGHHSSLNNSSVCSSLNP--GFGAKSIT 329
           QS G +S  + SSV SS N   G G KS T
Sbjct: 245 QSRGRNSVSSKSSVGSSSNSNHGNGVKSST 272

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BLAST of CmoCh04G009880 vs. NCBI nr
Match: gi|778676253|ref|XP_011650558.1| (PREDICTED: uncharacterized protein LOC101210465 isoform X3 [Cucumis sativus])

HSP 1 Score: 334.3 bits (856), Expect = 3.0e-88
Identity = 212/375 (56.53%), Postives = 253/375 (67.47%), Query Frame = 1


Query: 71  PKMMPIKSYDHWAFLEEIEAPMWVDLTLEGKSKNQNIDDKWFCTYHPVHQTSSHDLKSEF 130
           PKM+ + S  +WAFLEEIEAPMWVDL+LEGKS NQNIDDKWF T+H VHQ+SSHDLK  F
Sbjct: 3   PKMVHLNSNHYWAFLEEIEAPMWVDLSLEGKSYNQNIDDKWFYTHHQVHQSSSHDLKLVF 62

Query: 131 SQLFEEAKALDFELL-VYSIPKILTSVSRSRGRDFDNNKSKGIGQDFAMDKQVIVEELSS 190
           +QL++E K LDFEL+   S P +  SVSRSRG+DFD  K KG  + FAM+K+V+ E+L S
Sbjct: 63  AQLYDEKKTLDFELIKASSSPTLPDSVSRSRGKDFDGRKCKGNCRGFAMNKEVVGEKLIS 122

Query: 191 GSAATKWKPRPKPSFTDSKRILSSDPSLVSIATCLTGNAMLNVSATGSSPVGKEPADSRT 250
           GS     K   K SFT+SK I SS  SLV  A+    N + NVS  GSS  GKE  DSRT
Sbjct: 123 GSTT---KLNSKSSFTNSKGISSSKSSLVPYASGFIENVVANVSVIGSSSEGKESVDSRT 182

Query: 251 ------GISHRQPHKPMLATSQTLGHSSRLLSDMR-CLRKSCVISQQASRLEDNSRQRQS 310
                 GI H+Q HKP   TSQ+L  SS+LL DMR  LRKSC  ++QASRLE N+ +RQS
Sbjct: 183 SSTIVSGIGHQQQHKPTEVTSQSLSSSSKLLLDMRRSLRKSCA-TRQASRLEVNNCRRQS 242

Query: 311 SGHHSSLNNSSVCSSLNPGFGAKSITNTTS-----------FPRMTQAAMNKDKVASVCS 370
           SG      NSS+ SSLNP FG+K+IT T+              RMTQA+MNK KV SV S
Sbjct: 243 SGR-----NSSISSSLNPSFGSKNITKTSEHHLKNSQCVGGLSRMTQASMNKSKVLSVLS 302

Query: 371 STLIIQVEDASSNTRRV-GKLYNDKPVHLKPSKPKILRPKVSLLQKKDERNTCLK-PNKQ 425
           STL +Q+E  SSN+RRV GKL N  P   + SKPKILRPK SLL ++D +N+CL    K+
Sbjct: 303 STLKVQLEGVSSNSRRVVGKLNNANP---EASKPKILRPKASLLLQRDNQNSCLNLKKKE 362

[Close]

BLAST of CmoCh04G009880 vs. NCBI nr
Match: gi|778676247|ref|XP_011650556.1| (PREDICTED: uncharacterized protein LOC101210465 isoform X1 [Cucumis sativus])

HSP 1 Score: 334.3 bits (856), Expect = 3.0e-88
Identity = 212/375 (56.53%), Postives = 253/375 (67.47%), Query Frame = 1


Query: 71  PKMMPIKSYDHWAFLEEIEAPMWVDLTLEGKSKNQNIDDKWFCTYHPVHQTSSHDLKSEF 130
           PKM+ + S  +WAFLEEIEAPMWVDL+LEGKS NQNIDDKWF T+H VHQ+SSHDLK  F
Sbjct: 3   PKMVHLNSNHYWAFLEEIEAPMWVDLSLEGKSYNQNIDDKWFYTHHQVHQSSSHDLKLVF 62

Query: 131 SQLFEEAKALDFELL-VYSIPKILTSVSRSRGRDFDNNKSKGIGQDFAMDKQVIVEELSS 190
           +QL++E K LDFEL+   S P +  SVSRSRG+DFD  K KG  + FAM+K+V+ E+L S
Sbjct: 63  AQLYDEKKTLDFELIKASSSPTLPDSVSRSRGKDFDGRKCKGNCRGFAMNKEVVGEKLIS 122

Query: 191 GSAATKWKPRPKPSFTDSKRILSSDPSLVSIATCLTGNAMLNVSATGSSPVGKEPADSRT 250
           GS     K   K SFT+SK I SS  SLV  A+    N + NVS  GSS  GKE  DSRT
Sbjct: 123 GSTT---KLNSKSSFTNSKGISSSKSSLVPYASGFIENVVANVSVIGSSSEGKESVDSRT 182

Query: 251 ------GISHRQPHKPMLATSQTLGHSSRLLSDMR-CLRKSCVISQQASRLEDNSRQRQS 310
                 GI H+Q HKP   TSQ+L  SS+LL DMR  LRKSC  ++QASRLE N+ +RQS
Sbjct: 183 SSTIVSGIGHQQQHKPTEVTSQSLSSSSKLLLDMRRSLRKSCA-TRQASRLEVNNCRRQS 242

Query: 311 SGHHSSLNNSSVCSSLNPGFGAKSITNTTS-----------FPRMTQAAMNKDKVASVCS 370
           SG      NSS+ SSLNP FG+K+IT T+              RMTQA+MNK KV SV S
Sbjct: 243 SGR-----NSSISSSLNPSFGSKNITKTSEHHLKNSQCVGGLSRMTQASMNKSKVLSVLS 302

Query: 371 STLIIQVEDASSNTRRV-GKLYNDKPVHLKPSKPKILRPKVSLLQKKDERNTCLK-PNKQ 425
           STL +Q+E  SSN+RRV GKL N  P   + SKPKILRPK SLL ++D +N+CL    K+
Sbjct: 303 STLKVQLEGVSSNSRRVVGKLNNANP---EASKPKILRPKASLLLQRDNQNSCLNLKKKE 362

[Close]

BLAST of CmoCh04G009880 vs. NCBI nr
Match: gi|659102750|ref|XP_008452295.1| (PREDICTED: uncharacterized protein DDB_G0271670-like isoform X2 [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 1.3e-54
Identity = 157/362 (43.37%), Postives = 204/362 (56.35%), Query Frame = 1


Query: 71  PKMMPIKSYDHWAFLEEIEAPMWVDLTLEGKSKNQNIDDKWFCTYHPVHQTSSHDLKSEF 130
           PKM+ +KS D+WAFLEEIEAPMWVDL+LEGK  NQNIDDKWF T+H  HQ+SSHDLK  F
Sbjct: 3   PKMVHLKSNDYWAFLEEIEAPMWVDLSLEGKPYNQNIDDKWFYTHHQAHQSSSHDLKLAF 62

Query: 131 SQLFEEAKALDFELL-VYSIPKILTSVSRSRGRDFDNNKSKGIGQDFAMDKQVIVEELSS 190
           SQL++E K LD EL+   S P +  SVSRSRG+DFD  K KG  Q FAM+KQ++V   SS
Sbjct: 63  SQLYDEGKTLDSELIKASSSPTLPDSVSRSRGKDFDGRKCKGNCQGFAMNKQIVVIGSSS 122

Query: 191 GSAATKWKPRPKPSFTDSKRILSSDPSLVSIATCLTGNAMLNVSATGSSPVGKEPADSRT 250
               +           DS+    +  +++S       +  + V +   S   K  +D R 
Sbjct: 123 EGKES----------VDSR----TSSTIISGIGHQQKHKPMEVISQPLSSSSKLLSDMRR 182

Query: 251 GI--SHRQPHKPMLATS----QTLGHSSRLLSDMRCLRKSCVISQQASRLEDNSRQRQSS 310
            +  SH       L  S    Q+ GH+S + S +     S  I+             ++S
Sbjct: 183 SLRKSHATRQASRLEVSNCRRQSSGHNSSISSSLNPSFGSKNIT-------------KTS 242

Query: 311 GHHSSLNNSSVCSSLNPGFGAKSITNTTSFPRMTQAAMNKDKVASVCSSTLIIQVEDASS 370
            HH   N+  V                  F RMTQA++NK KV+SV SSTL IQ+ED SS
Sbjct: 243 EHHLKKNSQCV----------------GGFSRMTQASINKSKVSSVLSSTLKIQLEDVSS 302

Query: 371 NTRRVGKLYNDKPVHLKPSKPKILRPKVSLLQKKDERNTCLK-PNKQDLAGTARCKTVVA 425
           N+RRVGKL N  P   + +KPKILRPK SLL +++++N+CL    K+ L  T RCKTV  
Sbjct: 303 NSRRVGKLNNANP---EAAKPKILRPKASLLLQRNDQNSCLNLKKKEGLERTGRCKTVET 318

[Close]

BLAST of CmoCh04G009880 vs. NCBI nr
Match: gi|659102748|ref|XP_008452294.1| (PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 1.3e-54
Identity = 157/362 (43.37%), Postives = 204/362 (56.35%), Query Frame = 1


Query: 71  PKMMPIKSYDHWAFLEEIEAPMWVDLTLEGKSKNQNIDDKWFCTYHPVHQTSSHDLKSEF 130
           PKM+ +KS D+WAFLEEIEAPMWVDL+LEGK  NQNIDDKWF T+H  HQ+SSHDLK  F
Sbjct: 3   PKMVHLKSNDYWAFLEEIEAPMWVDLSLEGKPYNQNIDDKWFYTHHQAHQSSSHDLKLAF 62

Query: 131 SQLFEEAKALDFELL-VYSIPKILTSVSRSRGRDFDNNKSKGIGQDFAMDKQVIVEELSS 190
           SQL++E K LD EL+   S P +  SVSRSRG+DFD  K KG  Q FAM+KQ++V   SS
Sbjct: 63  SQLYDEGKTLDSELIKASSSPTLPDSVSRSRGKDFDGRKCKGNCQGFAMNKQIVVIGSSS 122

Query: 191 GSAATKWKPRPKPSFTDSKRILSSDPSLVSIATCLTGNAMLNVSATGSSPVGKEPADSRT 250
               +           DS+    +  +++S       +  + V +   S   K  +D R 
Sbjct: 123 EGKES----------VDSR----TSSTIISGIGHQQKHKPMEVISQPLSSSSKLLSDMRR 182

Query: 251 GI--SHRQPHKPMLATS----QTLGHSSRLLSDMRCLRKSCVISQQASRLEDNSRQRQSS 310
            +  SH       L  S    Q+ GH+S + S +     S  I+             ++S
Sbjct: 183 SLRKSHATRQASRLEVSNCRRQSSGHNSSISSSLNPSFGSKNIT-------------KTS 242

Query: 311 GHHSSLNNSSVCSSLNPGFGAKSITNTTSFPRMTQAAMNKDKVASVCSSTLIIQVEDASS 370
            HH   N+  V                  F RMTQA++NK KV+SV SSTL IQ+ED SS
Sbjct: 243 EHHLKKNSQCV----------------GGFSRMTQASINKSKVSSVLSSTLKIQLEDVSS 302

Query: 371 NTRRVGKLYNDKPVHLKPSKPKILRPKVSLLQKKDERNTCLK-PNKQDLAGTARCKTVVA 425
           N+RRVGKL N  P   + +KPKILRPK SLL +++++N+CL    K+ L  T RCKTV  
Sbjct: 303 NSRRVGKLNNANP---EAAKPKILRPKASLLLQRNDQNSCLNLKKKEGLERTGRCKTVET 318

[Close]

BLAST of CmoCh04G009880 vs. NCBI nr
Match: gi|659102752|ref|XP_008452296.1| (PREDICTED: uncharacterized protein DDB_G0271670-like isoform X3 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 110/208 (52.88%), Postives = 136/208 (65.38%), Query Frame = 1


Query: 236 GSSPVGKEPADSRT------GISHRQPHKPMLATSQTLGHSSRLLSDMRCLRKSCVISQQ 295
           GSS  GKE  DSRT      GI H+Q HKPM   SQ L  SS+LLSDMR   +    ++Q
Sbjct: 71  GSSSEGKESVDSRTSSTIISGIGHQQKHKPMEVISQPLSSSSKLLSDMRRSLRKSHATRQ 130

Query: 296 ASRLEDNSRQRQSSGHHSSLNNSSVCSSLNPGFGAKSITNTTS------------FPRMT 355
           ASRLE ++ +RQSSGH     NSS+ SSLNP FG+K+IT T+             F RMT
Sbjct: 131 ASRLEVSNCRRQSSGH-----NSSISSSLNPSFGSKNITKTSEHHLKKNSQCVGGFSRMT 190

Query: 356 QAAMNKDKVASVCSSTLIIQVEDASSNTRRVGKLYNDKPVHLKPSKPKILRPKVSLLQKK 415
           QA++NK KV+SV SSTL IQ+ED SSN+RRVGKL N  P   + +KPKILRPK SLL ++
Sbjct: 191 QASINKSKVSSVLSSTLKIQLEDVSSNSRRVGKLNNANP---EAAKPKILRPKASLLLQR 250

Query: 416 DERNTCLK-PNKQDLAGTARCKTVVAGK 425
           +++N+CL    K+ L  T RCKTV  GK
Sbjct: 251 NDQNSCLNLKKKEGLERTGRCKTVETGK 270

The following BLAST results are available for this feature:

BLAST of CmoCh04G009880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7V1_CUCSA	8.4e-37	54.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099670 PE=4 SV=1	[more]
B9N575_POPTR	5.1e-34	35.47	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41790g PE=4 SV=1	[more]
F6H2E5_VITVI	7.6e-30	37.13	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g03670 PE=4 SV=...	[more]
A0A061F7W8_THECC	1.3e-29	35.69	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_031307 PE=4 SV=1	[more]
A0A067KS37_JATCU	1.7e-29	40.74	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00704 PE=4 SV=1	[more]

BLAST of CmoCh04G009880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676253\|ref\|XP_011650558.1\|	3.0e-88	56.53	PREDICTED: uncharacterized protein LOC101210465 isoform X3 [Cucumis sativus]	[more]
gi\|778676247\|ref\|XP_011650556.1\|	3.0e-88	56.53	PREDICTED: uncharacterized protein LOC101210465 isoform X1 [Cucumis sativus]	[more]
gi\|659102750\|ref\|XP_008452295.1\|	1.3e-54	43.37	PREDICTED: uncharacterized protein DDB_G0271670-like isoform X2 [Cucumis melo]	[more]
gi\|659102748\|ref\|XP_008452294.1\|	1.3e-54	43.37	PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Cucumis melo]	[more]
gi\|659102752\|ref\|XP_008452296.1\|	1.1e-37	52.88	PREDICTED: uncharacterized protein DDB_G0271670-like isoform X3 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009880.1	CmoCh04G009880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G009880	Cucsa.074460	Cucumber (Gy14) v1	cgycmoB0118
CmoCh04G009880	CmaCh16G008090	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G009880	CmaCh04G009190	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G009880	Cla011747	Watermelon (97103) v1	cmowmB674
CmoCh04G009880	Csa3G099670	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G009880	MELO3C016557	Melon (DHL92) v3.5.1	cmomeB680
CmoCh04G009880	ClCG10G006460	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G009880	CSPI03G05840	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G009880	Lsi05G006840	Bottle gourd (USVL1VR-Ls)	cmolsiB684
CmoCh04G009880	Cp4.1LG14g00230	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G009880	Cp4.1LG01g08410	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G009880	MELO3C016557.2	Melon (DHL92) v3.6.1	cmomedB775
CmoCh04G009880	CsaV3_3G005940	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G009880	Cla97C10G190430	Watermelon (97103) v2	cmowmbB689
CmoCh04G009880	CsGy3G005960	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G009880	Carg00036	Silver-seed gourd	carcmoB0923
CmoCh04G009880	Carg24076	Silver-seed gourd	carcmoB0305

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G009880	CmoCh16G008640	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G009880	Bottle gourd (USVL1VR-Ls)	cmolsiB678