CmoCh04G009870 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G009870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 4982967 .. 4983744 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCAGAAGGTTCTCGAGGGGGCCTTTCCCAGTCACGATGGCCTGGACAAAGAACCCGAACATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTCAGCTCGGCGAAGGTGACGGGGTCGTCGGCCAGTCCGAGTGGGTCGAAGTACTGACCCCCCGGGTACAGGTCGTTGCCTTCGCCCACGCCGTCCAGCCCGTTGATGCGGAACCCTTCAACCAGCCCCATTAGGACCACTTGGAAACCCAAAACGGCTAGGATGCTCTGGGCGTGCACCAGGTTGGGGTTCCCCAAGTAGTCGAGCCCCCCTTCTGAGAAGATCTGGGCTCCGGCCTTGAACCAGACTGGCTCCTTGAAGTCCACTTTCAACCATTTTTCTAGCACCTCTGGTGTTATGCACCCGAAGGCTCCCAACATCGCCCACCTCCCGTGGATTACCTGCAATTCCGTTCGACCATATGTAAATCAAAATTTGAATTCATCAAATTAATACCTTAATTAATTCTTAAGTAAGGATGGGGATGGGAATTACCTCAAGAGCTCTGTTCTTGGCGAAGGCCTCGGGATCGGCGGACAACCCAGCAGTGTCCCATCCATAATCGCCGGGGAACTCTCCGTTCAAGTAGGAGGGAGTCTGAGCGGAAAACGGCCCCAAGTACTTGACTCTGTCTGGTCCATACCACAGTTCATTTCCCTATTCAAAATTGAAAAAAAGAAGAAAACATCATCAATTTCAATACTCCATAAGACAAAAAGGAAGCAAAGATAG

mRNA sequence

ATGGTCCAGAAGGTTCTCGAGGGGGCCTTTCCCAGTCACGATGGCCTGGACAAAGAACCCGAACATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTCAGCTCGGCGAAGGTGACGGGGTCGTCGGCCAGTCCGAGTGGGTCGAAGTACTGACCCCCCGGTCGAGCCCCCCTTCTGAGAAGATCTGGGCTCCGGCCTTGAACCAGACTGGCTCCTTGAAGTCCACTTTCAACCATTTTTCTAGCACCTCTGGTGTTATGCACCCGAAGGCTCCCAACATCGCCCACCTCCCGTGGATTACCTGCAATTCCGTTCGACCATATGATGGGGATGGGAATTACCTCAAGAGCTCTGTTCTTGGCGAAGGCCTCGGGATCGGCGGACAACCCAGCAGTGTCCCATCCATAATCGCCGGGGAACTCTCCGTTCAAGTAGGAGGGAGTCTGAGCGGAAAACGGCCCCAAGTACTTGACTCTGTCTGGTCCATACCACAGTTCATTTCCCTATTCAAAATTGAAAAAAAGAAGAAAACATCATCAATTTCAATACTCCATAAGACAAAAAGGAAGCAAAGATAG

Coding sequence (CDS)

ATGGTCCAGAAGGTTCTCGAGGGGGCCTTTCCCAGTCACGATGGCCTGGACAAAGAACCCGAACATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTCAGCTCGGCGAAGGTGACGGGGTCGTCGGCCAGTCCGAGTGGGTCGAAGTACTGACCCCCCGGTCGAGCCCCCCTTCTGAGAAGATCTGGGCTCCGGCCTTGAACCAGACTGGCTCCTTGAAGTCCACTTTCAACCATTTTTCTAGCACCTCTGGTGTTATGCACCCGAAGGCTCCCAACATCGCCCACCTCCCGTGGATTACCTGCAATTCCGTTCGACCATATGATGGGGATGGGAATTACCTCAAGAGCTCTGTTCTTGGCGAAGGCCTCGGGATCGGCGGACAACCCAGCAGTGTCCCATCCATAATCGCCGGGGAACTCTCCGTTCAAGTAGGAGGGAGTCTGAGCGGAAAACGGCCCCAAGTACTTGACTCTGTCTGGTCCATACCACAGTTCATTTCCCTATTCAAAATTGAAAAAAAGAAGAAAACATCATCAATTTCAATACTCCATAAGACAAAAAGGAAGCAAAGATAG

Homology

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BLAST of CmoCh04G009870 vs. TrEMBL
Match: A0A0D9V517_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.3e-12
Identity = 58/200 (29.00%), Postives = 101/200 (50.50%), Query Frame = 1


Query: 1    MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTPRSSP 60
            +V +VLEGA   ++GLD+E EHGEHG+  VL+LLHL+LG+  GV+ +++ VE     ++ 
Sbjct: 999  VVGQVLEGALAGNNGLDEETEHGEHGEATVLNLLHLELGKRLGVISETKRVE-----AAA 1058

Query: 61   PSEKIWAPALNQTGS---LKSTFNHFSSTSGVMHP---------------------KAPN 120
              E++   A   TG+   L  T  H  ++                           +   
Sbjct: 1059 GVERVDDLAERTTGNAVPLNGTHEHDLASPDCKDALRVDQARVAEVIEAALAEDLLEPDG 1118

Query: 121  IAHLPWITCNSVR---PYDGDG-----NYLKSSVLGEGLGIGGQPSSVPSIIAGELSVQV 169
            +A L  +    +R   P   +      ++L+ +VLGE LG+G +   VP+++ GE + +V
Sbjct: 1119 LAELNAVAGEELREDAPERAEHGPPAVDHLQLTVLGECLGVGREAGGVPTVVTGEFTCEV 1178

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BLAST of CmoCh04G009870 vs. TrEMBL
Match: C4J6D3_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.1e-11
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 1  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVL 55
          +V++VLEG     DGLD+E EHGEHG+  VLDLL L+LGEGDGVVG+++ VEVL
Sbjct: 46 VVEQVLEGPLAGDDGLDEEAEHGEHGEAAVLDLLDLELGEGDGVVGEAQRVEVL 99

[Close]

BLAST of CmoCh04G009870 vs. TrEMBL
Match: J3L3K6_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 1  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVE 53
          +V +VLEG     DGLD+E EHGEHG+  VLDLLHL+LGE  GV+GQ+E VE
Sbjct: 14 VVGQVLEGPLAGDDGLDEEAEHGEHGEAAVLDLLHLELGERLGVIGQAEGVE 65

[Close]

BLAST of CmoCh04G009870 vs. TrEMBL
Match: A0A0N8EJL8_9CRUS (Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-08
Identity = 61/198 (30.81%), Postives = 86/198 (43.43%), Query Frame = 1


Query: 4   KVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLTPRSSPP-- 63
           +V  GA   HDGL +E EH EHG+  VLDLLHL+L +G GVV Q++ VE L         
Sbjct: 52  QVGNGALAGHDGLHEEAEHAEHGEAAVLDLLHLELSQGVGVVSQAQGVEELAAGVQAVQV 111

Query: 64  -SEKIWAPALNQTGSLKSTFN---HFSSTSGVMHPKAPNIAHLPWITC-----NSVRPYD 123
            +E  W  A+     L ST     H       +      +A +   T        + P+ 
Sbjct: 112 LAEATWGTAVGAV-CLSSTHEDDLHSQGCQDALGVHQVLVAQVVQATVLEDLGTGLEPHG 171

Query: 124 -GDGNYLKSSVLG-----------------------EGLGIGGQPSSVPSIIAGELSVQV 167
             +G+ +    LG                       EGL + GQ  SVP+++A EL+ QV
Sbjct: 172 LTEGHAVLGQQLGGDAAQSAEHGPAGVDHLHLPVAGEGLRVSGQTGSVPAVVAWELASQV 231

[Close]

BLAST of CmoCh04G009870 vs. TrEMBL
Match: T1N1P0_TRIUA (Uncharacterized protein OS=Triticum urartu PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-08
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 1  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVL 55
          +V++VL+ A    D LD+EP+H EHG+  + DLLHL+L EGD VVG++E VEVL
Sbjct: 21 VVEQVLQWALTGDDSLDEEPKHREHGETAIFDLLHLKLSEGDRVVGKAERVEVL 74

[Close]

BLAST of CmoCh04G009870 vs. NCBI nr
Match: gi|238011396|gb|ACR36733.1| (unknown [Zea mays])

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 1  MVQKVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVL 55
          +V++VLEG     DGLD+E EHGEHG+  VLDLL L+LGEGDGVVG+++ VEVL
Sbjct: 46 VVEQVLEGPLAGDDGLDEEAEHGEHGEAAVLDLLDLELGEGDGVVGEAQRVEVL 99

[Close]

BLAST of CmoCh04G009870 vs. NCBI nr
Match: gi|223949697|gb|ACN28932.1| (unknown [Zea mays])

HSP 1 Score: 62.8 bits (151), Expect = 7.8e-07
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 4   KVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLT 56
           +VL+GAF    GLD+E EHGEHG+P VLDLLHL+ G   GV GQ++ VE  T
Sbjct: 78  EVLDGAFAGDVGLDEEGEHGEHGEPAVLDLLHLEDGGLVGVAGQAQGVEGAT 129

[Close]

BLAST of CmoCh04G009870 vs. NCBI nr
Match: gi|224030443|gb|ACN34297.1| (unknown [Zea mays])

HSP 1 Score: 62.8 bits (151), Expect = 7.8e-07
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 4   KVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVEVLT 56
           +VL+GAF    GLD+E EHGEHG+P VLDLLHL+ G   GV GQ++ VE  T
Sbjct: 78  EVLDGAFAGDVGLDEEGEHGEHGEPAVLDLLHLEDGGLVGVAGQAQGVEGAT 129

[Close]

BLAST of CmoCh04G009870 vs. NCBI nr
Match: gi|223975125|gb|ACN31750.1| (unknown [Zea mays])

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 4  KVLEGAFPSHDGLDKEPEHGEHGQPPVLDLLHLQLGEGDGVVGQSEWVE 53
          +VL GAF    GLD+E EHGEHGQP VLDLLHL+ G   GV GQ++ VE
Sbjct: 44 EVLHGAFAGDVGLDEEGEHGEHGQPAVLDLLHLEDGGLVGVAGQAQGVE 92

The following BLAST results are available for this feature:

BLAST of CmoCh04G009870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D9V517_9ORYZ	7.3e-12	29.00	Uncharacterized protein OS=Leersia perrieri PE=3 SV=1	[more]
C4J6D3_MAIZE	8.1e-11	64.81	Uncharacterized protein OS=Zea mays PE=2 SV=1	[more]
J3L3K6_ORYBR	4.4e-09	63.46	Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1	[more]
A0A0N8EJL8_9CRUS	6.4e-08	30.81	Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1	[more]
T1N1P0_TRIUA	6.4e-08	55.56	Uncharacterized protein OS=Triticum urartu PE=4 SV=1	[more]

BLAST of CmoCh04G009870 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|238011396\|gb\|ACR36733.1\|	1.2e-10	64.81	unknown [Zea mays]	[more]
gi\|223949697\|gb\|ACN28932.1\|	7.8e-07	59.62	unknown [Zea mays]	[more]
gi\|224030443\|gb\|ACN34297.1\|	7.8e-07	59.62	unknown [Zea mays]	[more]
gi\|223975125\|gb\|ACN31750.1\|	1.0e-06	63.27	unknown [Zea mays]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009870.1	CmoCh04G009870.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G009870	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G009870	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G009870	Bottle gourd (USVL1VR-Ls)	cmolsiB678
CmoCh04G009870	Bottle gourd (USVL1VR-Ls)	cmolsiB684
CmoCh04G009870	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G009870	Melon (DHL92) v3.6.1	cmomedB775
CmoCh04G009870	Silver-seed gourd	carcmoB0305
CmoCh04G009870	Silver-seed gourd	carcmoB0923
CmoCh04G009870	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G009870	Watermelon (97103) v2	cmowmbB689
CmoCh04G009870	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh04G009870	Cucumber (Gy14) v1	cgycmoB0118
CmoCh04G009870	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G009870	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G009870	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G009870	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G009870	Melon (DHL92) v3.5.1	cmomeB680
CmoCh04G009870	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G009870	Watermelon (97103) v1	cmowmB674