CmoCh04G008980 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G008980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 4522641 .. 4523210 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGGGTATTCAATTTCTGATGCTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGGCGCTGCTCCCGCTCAGCCGCCCACCACCCCGGCTGTTCCGCCCCCGTCTACTCCTCCTCCAGCTGCCTCCCCACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCACCGGCCACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCGAGCCAACCACCAGCCACACCTCCTACATCTCCAGCACCGACCTCCTCTCCAACTGCGCCACCAAAGGAGGGTCCAGCCTCATCTCCATCTCCATCCACCGCGTCTCCACCATCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCCCCACCCCCAGAAGATAATGGCGCAGTCTCCATTAGCCGGGTGGCGATGGTTGGCAGTGCTGTGAGCGGAGTTTTGTTGGCAATGGTGTTCGCTTAG

mRNA sequence

ATGAAGATGGGTATTCAATTTCTGATGCTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGGCGCTGCTCCCGCTCAGCCGCCCACCACCCCGGCTGTTCCGCCCCCGTCTACTCCTCCTCCAGCTGCCTCCCCACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCACCGGCCACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCGAGCCAACCACCAGCCACACCTCCTACATCTCCAGCACCGACCTCCTCTCCAACTGCGCCACCAAAGGAGGGTCCAGCCTCATCTCCATCTCCATCCACCGCGTCTCCACCATCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCCCCACCCCCAGAAGATAATGGCGCAGTCTCCATTAGCCGGGTGGCGATGGTTGGCAGTGCTGTGAGCGGAGTTTTGTTGGCAATGGTGTTCGCTTAG

Coding sequence (CDS)

ATGAAGATGGGTATTCAATTTCTGATGCTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGGCGCTGCTCCCGCTCAGCCGCCCACCACCCCGGCTGTTCCGCCCCCGTCTACTCCTCCTCCAGCTGCCTCCCCACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCACCGGCCACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCGAGCCAACCACCAGCCACACCTCCTACATCTCCAGCACCGACCTCCTCTCCAACTGCGCCACCAAAGGAGGGTCCAGCCTCATCTCCATCTCCATCCACCGCGTCTCCACCATCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCCCCACCCCCAGAAGATAATGGCGCAGTCTCCATTAGCCGGGTGGCGATGGTTGGCAGTGCTGTGAGCGGAGTTTTGTTGGCAATGGTGTTCGCTTAG

Homology

[Close]

BLAST of CmoCh04G008980 vs. TrEMBL
Match: A0A0A0L0L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.3e-37
Identity = 123/194 (63.40%), Postives = 134/194 (69.07%), Query Frame = 1


Query: 1   MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
           MKMG QF+M LA  ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP           
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT--- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---AP 120
                                 PPPATPPPATPP A TPPSSPPSQPPA+PPTSP   +P
Sbjct: 61  ----------------------PPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSP 120

Query: 121 TSSPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPP-PPEDNGAVSISRVAMV 180
           +S PTAPPKEGP S P   T+SPPSPP EGNVP+ +PGP+ PP PPE NGA S+SR  MV
Sbjct: 121 SSPPTAPPKEGPISPP---TSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMV 166

Query: 181 GSAVSGVLLAMVFA 190
           G AV+G  LAMVFA
Sbjct: 181 GGAVAGAFLAMVFA 166

[Close]

BLAST of CmoCh04G008980 vs. TrEMBL
Match: A0A0R0KYA8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G039700 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.0e-11
Identity = 85/187 (45.45%), Postives = 104/187 (55.61%), Query Frame = 1


Query: 5   IQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPP--STPPPAASPPXXXXXXXXXXXXX 64
           +Q L++L  LA+S +AQAPGAAP QPPTT   PPP  S P PA +PP             
Sbjct: 6   LQLLLILGLLASSCLAQAPGAAPTQPPTTTPSPPPPRSAPAPAPTPP------------- 65

Query: 65  XXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTA 124
                               PPPATPPPA   +ATPP  P + PPAT PT P PT++PT 
Sbjct: 66  ------------------ATPPPATPPPA---AATPP--PATSPPATTPT-PTPTAAPT- 125

Query: 125 PPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVSGV 184
            P   PA+SP PS +SPP+P T G  P  A G   PPPP  + A S S+  + GSA+SG+
Sbjct: 126 -PASSPATSPVPSASSPPAPGTAGPAPGPAGGAEPPPPP--SAAFSASKAFIAGSALSGI 151

Query: 185 LLAMVFA 190
            +AMV A
Sbjct: 186 FVAMVLA 151

[Close]

BLAST of CmoCh04G008980 vs. NCBI nr
Match: gi|700198508|gb|KGN53666.1| (hypothetical protein Csa_4G098710 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 123/194 (63.40%), Postives = 134/194 (69.07%), Query Frame = 1


Query: 1   MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
           MKMG QF+M LA  ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP           
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT--- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---AP 120
                                 PPPATPPPATPP A TPPSSPPSQPPA+PPTSP   +P
Sbjct: 61  ----------------------PPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSP 120

Query: 121 TSSPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPP-PPEDNGAVSISRVAMV 180
           +S PTAPPKEGP S P   T+SPPSPP EGNVP+ +PGP+ PP PPE NGA S+SR  MV
Sbjct: 121 SSPPTAPPKEGPISPP---TSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMV 166

Query: 181 GSAVSGVLLAMVFA 190
           G AV+G  LAMVFA
Sbjct: 181 GGAVAGAFLAMVFA 166

[Close]

BLAST of CmoCh04G008980 vs. NCBI nr
Match: gi|778697564|ref|XP_011654350.1| (PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-35
Identity = 121/192 (63.02%), Postives = 132/192 (68.75%), Query Frame = 1


Query: 3   MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXXXX 62
           MG QF+M LA  ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP             
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT----- 60

Query: 63  XXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---APTS 122
                               PPPATPPPATPP A TPPSSPPSQPPA+PPTSP   +P+S
Sbjct: 61  --------------------PPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSS 120

Query: 123 SPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPP-PPEDNGAVSISRVAMVGS 182
            PTAPPKEGP S P   T+SPPSPP EGNVP+ +PGP+ PP PPE NGA S+SR  MVG 
Sbjct: 121 PPTAPPKEGPISPP---TSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGG 164

Query: 183 AVSGVLLAMVFA 190
           AV+G  LAMVFA
Sbjct: 181 AVAGAFLAMVFA 164

[Close]

BLAST of CmoCh04G008980 vs. NCBI nr
Match: gi|659111292|ref|XP_008455676.1| (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 1.7e-35
Identity = 120/192 (62.50%), Postives = 132/192 (68.75%), Query Frame = 1


Query: 3   MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXXXX 62
           MG QF+M LA  ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP             
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT----- 60

Query: 63  XXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---APTS 122
                               PPPATPPPATPP A TPPSSPPSQPPA+PPTSP   +P+S
Sbjct: 61  --------------------PPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSS 120

Query: 123 SPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGS 182
            PTAPPKEGP S P   T+SPPSPP EGNVP+ +PGP+  PPPPE NGA S+SR  MVG 
Sbjct: 121 PPTAPPKEGPISPP---TSSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGG 164

Query: 183 AVSGVLLAMVFA 190
           AV+G  LAM+FA
Sbjct: 181 AVAGAFLAMIFA 164

[Close]

BLAST of CmoCh04G008980 vs. NCBI nr
Match: gi|947121437|gb|KRH69643.1| (hypothetical protein GLYMA_02G039700 [Glycine max])

HSP 1 Score: 75.9 bits (185), Expect = 8.6e-11
Identity = 85/187 (45.45%), Postives = 104/187 (55.61%), Query Frame = 1


Query: 5   IQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPP--STPPPAASPPXXXXXXXXXXXXX 64
           +Q L++L  LA+S +AQAPGAAP QPPTT   PPP  S P PA +PP             
Sbjct: 6   LQLLLILGLLASSCLAQAPGAAPTQPPTTTPSPPPPRSAPAPAPTPP------------- 65

Query: 65  XXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTA 124
                               PPPATPPPA   +ATPP  P + PPAT PT P PT++PT 
Sbjct: 66  ------------------ATPPPATPPPA---AATPP--PATSPPATTPT-PTPTAAPT- 125

Query: 125 PPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVSGV 184
            P   PA+SP PS +SPP+P T G  P  A G   PPPP  + A S S+  + GSA+SG+
Sbjct: 126 -PASSPATSPVPSASSPPAPGTAGPAPGPAGGAEPPPPP--SAAFSASKAFIAGSALSGI 151

Query: 185 LLAMVFA 190
            +AMV A
Sbjct: 186 FVAMVLA 151

The following BLAST results are available for this feature:

BLAST of CmoCh04G008980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G008980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0L1_CUCSA	8.3e-37	63.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1	[more]
A0A0R0KYA8_SOYBN	6.0e-11	45.45	Uncharacterized protein OS=Glycine max GN=GLYMA_02G039700 PE=4 SV=1	[more]

BLAST of CmoCh04G008980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G008980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198508\|gb\|KGN53666.1\|	1.2e-36	63.40	hypothetical protein Csa_4G098710 [Cucumis sativus]	[more]
gi\|778697564\|ref\|XP_011654350.1\|	1.3e-35	63.02	PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus]	[more]
gi\|659111292\|ref\|XP_008455676.1\|	1.7e-35	62.50	PREDICTED: vegetative cell wall protein gp1 [Cucumis melo]	[more]
gi\|947121437\|gb\|KRH69643.1\|	8.6e-11	45.45	hypothetical protein GLYMA_02G039700 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G008980.1	CmoCh04G008980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 81..98 score: 2.8E-10coord: 99..124 score: 2.8E-10coord: 23..44 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G008980	Silver-seed gourd	carcmoB1259
CmoCh04G008980	Silver-seed gourd	carcmoB1371
CmoCh04G008980	Cucumber (Chinese Long) v3	cmocucB0831
CmoCh04G008980	Cucumber (Chinese Long) v3	cmocucB0909
CmoCh04G008980	Watermelon (97103) v2	cmowmbB682
CmoCh04G008980	Watermelon (97103) v2	cmowmbB689
CmoCh04G008980	Wax gourd	cmowgoB0811
CmoCh04G008980	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh04G008980	Cucurbita moschata (Rifu)	cmocmoB451
CmoCh04G008980	Cucumber (Gy14) v1	cgycmoB0229
CmoCh04G008980	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G008980	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G008980	Wild cucumber (PI 183967)	cmocpiB711
CmoCh04G008980	Wild cucumber (PI 183967)	cmocpiB775
CmoCh04G008980	Cucumber (Chinese Long) v2	cmocuB703
CmoCh04G008980	Cucumber (Chinese Long) v2	cmocuB768
CmoCh04G008980	Melon (DHL92) v3.5.1	cmomeB690
CmoCh04G008980	Melon (DHL92) v3.5.1	cmomeB702
CmoCh04G008980	Watermelon (Charleston Gray)	cmowcgB616
CmoCh04G008980	Watermelon (Charleston Gray)	cmowcgB641
CmoCh04G008980	Watermelon (97103) v1	cmowmB711
CmoCh04G008980	Cucurbita pepo (Zucchini)	cmocpeB655
CmoCh04G008980	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G008980	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G008980	Bottle gourd (USVL1VR-Ls)	cmolsiB685
CmoCh04G008980	Bottle gourd (USVL1VR-Ls)	cmolsiB628
CmoCh04G008980	Cucumber (Gy14) v2	cgybcmoB519
CmoCh04G008980	Cucumber (Gy14) v2	cgybcmoB824
CmoCh04G008980	Melon (DHL92) v3.6.1	cmomedB784
CmoCh04G008980	Melon (DHL92) v3.6.1	cmomedB801