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The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAGATGGGTATTCAATTTCTGATGCTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGGCGCTGCTCCCGCTCAGCCGCCCACCACCCCGGCTGTTCCGCCCCCGTCTACTCCTCCTCCAGCTGCCTCCCCACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCACCGGCCACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCGAGCCAACCACCAGCCACACCTCCTACATCTCCAGCACCGACCTCCTCTCCAACTGCGCCACCAAAGGAGGGTCCAGCCTCATCTCCATCTCCATCCACCGCGTCTCCACCATCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCCCCACCCCCAGAAGATAATGGCGCAGTCTCCATTAGCCGGGTGGCGATGGTTGGCAGTGCTGTGAGCGGAGTTTTGTTGGCAATGGTGTTCGCTTAG mRNA sequence ATGAAGATGGGTATTCAATTTCTGATGCTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGGCGCTGCTCCCGCTCAGCCGCCCACCACCCCGGCTGTTCCGCCCCCGTCTACTCCTCCTCCAGCTGCCTCCCCACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCACCGGCCACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCGAGCCAACCACCAGCCACACCTCCTACATCTCCAGCACCGACCTCCTCTCCAACTGCGCCACCAAAGGAGGGTCCAGCCTCATCTCCATCTCCATCCACCGCGTCTCCACCATCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCCCCACCCCCAGAAGATAATGGCGCAGTCTCCATTAGCCGGGTGGCGATGGTTGGCAGTGCTGTGAGCGGAGTTTTGTTGGCAATGGTGTTCGCTTAG Coding sequence (CDS) ATGAAGATGGGTATTCAATTTCTGATGCTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGGCGCTGCTCCCGCTCAGCCGCCCACCACCCCGGCTGTTCCGCCCCCGTCTACTCCTCCTCCAGCTGCCTCCCCACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCACCGGCCACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCGAGCCAACCACCAGCCACACCTCCTACATCTCCAGCACCGACCTCCTCTCCAACTGCGCCACCAAAGGAGGGTCCAGCCTCATCTCCATCTCCATCCACCGCGTCTCCACCATCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCCCCACCCCCAGAAGATAATGGCGCAGTCTCCATTAGCCGGGTGGCGATGGTTGGCAGTGCTGTGAGCGGAGTTTTGTTGGCAATGGTGTTCGCTTAG
BLAST of CmoCh04G008980 vs. TrEMBL
Match: A0A0A0L0L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 8.3e-37 Identity = 123/194 (63.40%), Postives = 134/194 (69.07%), Query Frame = 1
Query: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
MKMG QF+M LA ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT--- 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---AP 120
PPPATPPPATPP A TPPSSPPSQPPA+PPTSP +P
Sbjct: 61 ----------------------PPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSP 120
Query: 121 TSSPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPP-PPEDNGAVSISRVAMV 180
+S PTAPPKEGP S P T+SPPSPP EGNVP+ +PGP+ PP PPE NGA S+SR MV
Sbjct: 121 SSPPTAPPKEGPISPP---TSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMV 166
Query: 181 GSAVSGVLLAMVFA 190
G AV+G LAMVFA
Sbjct: 181 GGAVAGAFLAMVFA 166
BLAST of CmoCh04G008980 vs. TrEMBL
Match: A0A0R0KYA8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G039700 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 6.0e-11 Identity = 85/187 (45.45%), Postives = 104/187 (55.61%), Query Frame = 1
Query: 5 IQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPP--STPPPAASPPXXXXXXXXXXXXX 64
+Q L++L LA+S +AQAPGAAP QPPTT PPP S P PA +PP
Sbjct: 6 LQLLLILGLLASSCLAQAPGAAPTQPPTTTPSPPPPRSAPAPAPTPP------------- 65
Query: 65 XXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTA 124
PPPATPPPA +ATPP P + PPAT PT P PT++PT
Sbjct: 66 ------------------ATPPPATPPPA---AATPP--PATSPPATTPT-PTPTAAPT- 125
Query: 125 PPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVSGV 184
P PA+SP PS +SPP+P T G P A G PPPP + A S S+ + GSA+SG+
Sbjct: 126 -PASSPATSPVPSASSPPAPGTAGPAPGPAGGAEPPPPP--SAAFSASKAFIAGSALSGI 151
Query: 185 LLAMVFA 190
+AMV A
Sbjct: 186 FVAMVLA 151
BLAST of CmoCh04G008980 vs. NCBI nr
Match: gi|700198508|gb|KGN53666.1| (hypothetical protein Csa_4G098710 [Cucumis sativus]) HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36 Identity = 123/194 (63.40%), Postives = 134/194 (69.07%), Query Frame = 1
Query: 1 MKMGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXX 60
MKMG QF+M LA ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT--- 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---AP 120
PPPATPPPATPP A TPPSSPPSQPPA+PPTSP +P
Sbjct: 61 ----------------------PPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSP 120
Query: 121 TSSPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPP-PPEDNGAVSISRVAMV 180
+S PTAPPKEGP S P T+SPPSPP EGNVP+ +PGP+ PP PPE NGA S+SR MV
Sbjct: 121 SSPPTAPPKEGPISPP---TSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMV 166
Query: 181 GSAVSGVLLAMVFA 190
G AV+G LAMVFA
Sbjct: 181 GGAVAGAFLAMVFA 166
BLAST of CmoCh04G008980 vs. NCBI nr
Match: gi|778697564|ref|XP_011654350.1| (PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus]) HSP 1 Score: 158.3 bits (399), Expect = 1.3e-35 Identity = 121/192 (63.02%), Postives = 132/192 (68.75%), Query Frame = 1
Query: 3 MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXXXX 62
MG QF+M LA ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP
Sbjct: 1 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT----- 60
Query: 63 XXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---APTS 122
PPPATPPPATPP A TPPSSPPSQPPA+PPTSP +P+S
Sbjct: 61 --------------------PPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSS 120
Query: 123 SPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPP-PPEDNGAVSISRVAMVGS 182
PTAPPKEGP S P T+SPPSPP EGNVP+ +PGP+ PP PPE NGA S+SR MVG
Sbjct: 121 PPTAPPKEGPISPP---TSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGG 164
Query: 183 AVSGVLLAMVFA 190
AV+G LAMVFA
Sbjct: 181 AVAGAFLAMVFA 164
BLAST of CmoCh04G008980 vs. NCBI nr
Match: gi|659111292|ref|XP_008455676.1| (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo]) HSP 1 Score: 157.9 bits (398), Expect = 1.7e-35 Identity = 120/192 (62.50%), Postives = 132/192 (68.75%), Query Frame = 1
Query: 3 MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPXXXXXXXXXXXXX 62
MG QF+M LA ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPP
Sbjct: 1 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT----- 60
Query: 63 XXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSA-TPPSSPPSQPPATPPTSP---APTS 122
PPPATPPPATPP A TPPSSPPSQPPA+PPTSP +P+S
Sbjct: 61 --------------------PPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSS 120
Query: 123 SPTAPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGS 182
PTAPPKEGP S P T+SPPSPP EGNVP+ +PGP+ PPPPE NGA S+SR MVG
Sbjct: 121 PPTAPPKEGPISPP---TSSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGG 164
Query: 183 AVSGVLLAMVFA 190
AV+G LAM+FA
Sbjct: 181 AVAGAFLAMIFA 164
BLAST of CmoCh04G008980 vs. NCBI nr
Match: gi|947121437|gb|KRH69643.1| (hypothetical protein GLYMA_02G039700 [Glycine max]) HSP 1 Score: 75.9 bits (185), Expect = 8.6e-11 Identity = 85/187 (45.45%), Postives = 104/187 (55.61%), Query Frame = 1
Query: 5 IQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPP--STPPPAASPPXXXXXXXXXXXXX 64
+Q L++L LA+S +AQAPGAAP QPPTT PPP S P PA +PP
Sbjct: 6 LQLLLILGLLASSCLAQAPGAAPTQPPTTTPSPPPPRSAPAPAPTPP------------- 65
Query: 65 XXXXXXXXXXXXXXXXXXXXPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTA 124
PPPATPPPA +ATPP P + PPAT PT P PT++PT
Sbjct: 66 ------------------ATPPPATPPPA---AATPP--PATSPPATTPT-PTPTAAPT- 125
Query: 125 PPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVSGV 184
P PA+SP PS +SPP+P T G P A G PPPP + A S S+ + GSA+SG+
Sbjct: 126 -PASSPATSPVPSASSPPAPGTAGPAPGPAGGAEPPPPP--SAAFSASKAFIAGSALSGI 151
Query: 185 LLAMVFA 190
+AMV A
Sbjct: 186 FVAMVLA 151
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L0L1_CUCSA | 8.3e-37 | 63.40 | Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1 | [more] |
| A0A0R0KYA8_SOYBN | 6.0e-11 | 45.45 | Uncharacterized protein OS=Glycine max GN=GLYMA_02G039700 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
The following terms have been associated with this gene:
Vocabulary: INTERPRO
| Term | Definition |
|---|
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008150 |
biological_process |
| cellular_component |
GO:0005575 |
cellular_component |
| molecular_function |
GO:0003674 |
molecular_function |
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PRINTS | PR01217 | PRICHEXTENSN | coord: 81..98
score: 2.8E-10coord: 99..124
score: 2.8E-10coord: 23..44
score: 2.8 |
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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