CmoCh04G008820 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G008820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPhototropic-responsive NPH3 family protein
LocationCmo_Chr04 : 4430308 .. 4430964 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAGTAGTCAATAGGCCAGCGTCAAAGACCAAATTTATACAATAAACAACAATCAAACGACACAGTAAAACAAACAGAATAGGTCCATCTCAGTCAATAATTGGAGTCTCAGCTCTAAGAAATTCGGACATACAAGTAGCCAGTCAATAGTTTAGAGTTCTAAGTGGTACTCACAATACTTCTGAGTGAATATGCAGGTTCTGTTTTCAGAGCAAGTGAAGATGAGGTCAGCCATGCAAGAGAAGGAGAAAGCACCCAGTAGTGATAATTCAGTTGAGGATGGAAACCCTTTATCAACAGACAGAGAGATTAAAAACCTCAAGGAAGAACTTCAGAGCGTGAAGACACAGATGGCAGGGTTGCAACGTGACTACTCGGAGCTGCAACAAGAGTATGAAAAACTAAGCAACAAGCAGAAAAATGTAGCAGGTTGGGTATTTGGTTGGAAGAAGATAAAGAATTCTTTCCAAACAAGAGTTGATGGAGATGAACCTGCCCAGCGTAGATCCAGCAGGCTTAGTTCTCGAGTGAGCTTAAGAGATAGATTATCAATGACCTGAAGCCTTGGAATAAGAGAATCCTCTAAAAGCTAAATAATTCAAAGAAGTTGCTATTCCACGTTTTTAATATTGTTCACCGTGCAGAATGCAG

mRNA sequence

ATGGCGGCATCAATAGGCCAGCGTCAAAGACCAAATTTATACAATAAACAACAATCAAACGACACAGTTCTGTTTTCAGAGCAAGTGAAGATGAGGTCAGCCATGCAAGAGAAGGAGAAAGCACCCAGTAGTGATAATTCAGTTGAGGATGGAAACCCTTTATCAACAGACAGAGAGATTAAAAACCTCAAGGAAGAACTTCAGAGCGTGAAGACACAGATGGCAGGGTTGCAACGTGACTACTCGGAGCTGCAACAAGAGTATGAAAAACTAAGCAACAAGCAGAAAAATGTAGCAGGTTGGGTATTTGGTTGGAAGAAGATAAAGAATTCTTTCCAAACAAGAGTTGATGGAGATGAACCTGCCCAGCGTAGATCCAGCAGGCTTAGTTCTCGAGTGAGCTTAAGAGATAGATTATCAATGACCTGAAGCCTTGGAATAAGAGAATCCTCTAAAAGCTAAATAATTCAAAGAAGTTGCTATTCCACGTTTTTAATATTGTTCACCGTGCAGAATGCAG

Coding sequence (CDS)

ATGGCGGCATCAATAGGCCAGCGTCAAAGACCAAATTTATACAATAAACAACAATCAAACGACACAGTTCTGTTTTCAGAGCAAGTGAAGATGAGGTCAGCCATGCAAGAGAAGGAGAAAGCACCCAGTAGTGATAATTCAGTTGAGGATGGAAACCCTTTATCAACAGACAGAGAGATTAAAAACCTCAAGGAAGAACTTCAGAGCGTGAAGACACAGATGGCAGGGTTGCAACGTGACTACTCGGAGCTGCAACAAGAGTATGAAAAACTAAGCAACAAGCAGAAAAATGTAGCAGGTTGGGTATTTGGTTGGAAGAAGATAAAGAATTCTTTCCAAACAAGAGTTGATGGAGATGAACCTGCCCAGCGTAGATCCAGCAGGCTTAGTTCTCGAGTGAGCTTAAGAGATAGATTATCAATGACCTGA
BLAST of CmoCh04G008820 vs. Swiss-Prot
Match: DOT3_ARATH (BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-20
Identity = 67/140 (47.86%), Postives = 87/140 (62.14%), Query Frame = 1

Query: 7   QRQRPNLYNKQQSNDTVLFSEQVKMRSAMQEKEKAPSSDNSV-EDGNPLSTDREI-KNLK 66
           Q  R  L    Q N  VLFSEQVKMR  MQ+K      +NS   +   +S D EI K LK
Sbjct: 468 QNDRLPLRTIVQINTQVLFSEQVKMRMMMQDKLPEKEEENSGGREDKRMSRDNEIIKTLK 527

Query: 67  EELQSVKTQMAGLQRDYSELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDEPAQ- 126
           EEL++VK +M+ LQ DY+ELQQEYE+LS+KQK+   W   W+K+K SFQT+ + +E  + 
Sbjct: 528 EELENVKKKMSELQSDYNELQQEYERLSSKQKSSHNWGLRWQKVKKSFQTKREDEETRER 587

Query: 127 -RRSSRLSSRVSLRDRLSMT 143
            RR S    R S R R+SM+
Sbjct: 588 TRRRSSTGQRTSFRRRMSMS 607

BLAST of CmoCh04G008820 vs. TrEMBL
Match: A0A0A0KZ42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095570 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 99/120 (82.50%), Postives = 106/120 (88.33%), Query Frame = 1

Query: 23  VLFSEQVKMRSAMQEKEKAPSSDNSVEDGNPLSTDREIKNLKEELQSVKTQMAGLQRDYS 82
           VLFSEQVKMRSAMQEKEKAPSSD+   DGN LSTDREIKNLK EL+SVK QMA LQ DYS
Sbjct: 498 VLFSEQVKMRSAMQEKEKAPSSDSD-HDGNHLSTDREIKNLKTELESVKAQMAELQSDYS 557

Query: 83  ELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDEPAQRRSSRLSSRVSLRDRLSMT 142
           ELQQEYEK+SNKQKN+AGW FGWKKIKNSF TR+DGDEPA +R SR SSR+SLR RLSMT
Sbjct: 558 ELQQEYEKISNKQKNIAGWGFGWKKIKNSFHTRIDGDEPAHQRHSRTSSRISLRRRLSMT 616

BLAST of CmoCh04G008820 vs. TrEMBL
Match: V4S250_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025174mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.5e-27
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1

Query: 23  VLFSEQVKMRSAMQEKEKAPSSDNSVEDGNPLSTDREIKNLKEELQSVKTQMAGLQRDYS 82
           VLFSEQVKMR+AMQEKE A   DNS +D    ST  EIKNL+EEL++VKT+MA LQ+DYS
Sbjct: 450 VLFSEQVKMRTAMQEKEPALQCDNSEQDDTQPSTSIEIKNLREELENVKTRMAALQKDYS 509

Query: 83  ELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDEPAQRRSSRLSS--RVSLRDRLS 142
           ELQ+EYEKLSNK K V+ W  GW+KIKNSF ++ D DE   RR +  S+  + S R R S
Sbjct: 510 ELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTGRQTSFRRRPS 569

BLAST of CmoCh04G008820 vs. TrEMBL
Match: V4SR70_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025174mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.5e-27
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1

Query: 23  VLFSEQVKMRSAMQEKEKAPSSDNSVEDGNPLSTDREIKNLKEELQSVKTQMAGLQRDYS 82
           VLFSEQVKMR+AMQEKE A   DNS +D    ST  EIKNL+EEL++VKT+MA LQ+DYS
Sbjct: 500 VLFSEQVKMRTAMQEKEPALQCDNSEQDDTQPSTSIEIKNLREELENVKTRMAALQKDYS 559

Query: 83  ELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDEPAQRRSSRLSS--RVSLRDRLS 142
           ELQ+EYEKLSNK K V+ W  GW+KIKNSF ++ D DE   RR +  S+  + S R R S
Sbjct: 560 ELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTGRQTSFRRRPS 619

BLAST of CmoCh04G008820 vs. TrEMBL
Match: V4UPK6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025174mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.5e-27
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1

Query: 23  VLFSEQVKMRSAMQEKEKAPSSDNSVEDGNPLSTDREIKNLKEELQSVKTQMAGLQRDYS 82
           VLFSEQVKMR+AMQEKE A   DNS +D    ST  EIKNL+EEL++VKT+MA LQ+DYS
Sbjct: 474 VLFSEQVKMRTAMQEKEPALQCDNSEQDDTQPSTSIEIKNLREELENVKTRMAALQKDYS 533

Query: 83  ELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDEPAQRRSSRLSS--RVSLRDRLS 142
           ELQ+EYEKLSNK K V+ W  GW+KIKNSF ++ D DE   RR +  S+  + S R R S
Sbjct: 534 ELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTGRQTSFRRRPS 593

BLAST of CmoCh04G008820 vs. TrEMBL
Match: A0A067EN03_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0070151mg PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.0e-26
Identity = 72/121 (59.50%), Postives = 86/121 (71.07%), Query Frame = 1

Query: 23  VLFSEQVKMRSAMQEKEKAPSSDNSVEDGNPLSTDREIKNLKEELQSVKTQMAGLQRDYS 82
           VLFSEQVKMR+AMQE E A   DNS +     ST  EIKNL+EEL++VKT+MA LQ+DYS
Sbjct: 430 VLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYS 489

Query: 83  ELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDEPAQRRS--SRLSSRVSLRDRLS 142
           ELQ+EYEKLSNK K V+ W  GW+KIKNSF ++ D DE   RR   +  S R S R R S
Sbjct: 490 ELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTSRRTSFRRRPS 549

BLAST of CmoCh04G008820 vs. TAIR10
Match: AT5G10250.1 (AT5G10250.1 Phototropic-responsive NPH3 family protein)

HSP 1 Score: 100.9 bits (250), Expect = 6.6e-22
Identity = 67/140 (47.86%), Postives = 87/140 (62.14%), Query Frame = 1

Query: 7   QRQRPNLYNKQQSNDTVLFSEQVKMRSAMQEKEKAPSSDNSV-EDGNPLSTDREI-KNLK 66
           Q  R  L    Q N  VLFSEQVKMR  MQ+K      +NS   +   +S D EI K LK
Sbjct: 468 QNDRLPLRTIVQINTQVLFSEQVKMRMMMQDKLPEKEEENSGGREDKRMSRDNEIIKTLK 527

Query: 67  EELQSVKTQMAGLQRDYSELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDEPAQ- 126
           EEL++VK +M+ LQ DY+ELQQEYE+LS+KQK+   W   W+K+K SFQT+ + +E  + 
Sbjct: 528 EELENVKKKMSELQSDYNELQQEYERLSSKQKSSHNWGLRWQKVKKSFQTKREDEETRER 587

Query: 127 -RRSSRLSSRVSLRDRLSMT 143
            RR S    R S R R+SM+
Sbjct: 588 TRRRSSTGQRTSFRRRMSMS 607

BLAST of CmoCh04G008820 vs. NCBI nr
Match: gi|778691784|ref|XP_011653350.1| (PREDICTED: LOW QUALITY PROTEIN: BTB/POZ domain-containing protein DOT3 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 9.9e-44
Identity = 100/123 (81.30%), Postives = 107/123 (86.99%), Query Frame = 1

Query: 20  NDTVLFSEQVKMRSAMQEKEKAPSSDNSVEDGNPLSTDREIKNLKEELQSVKTQMAGLQR 79
           N  VLFSEQVKMRSAMQEKEKAPSSD+   DGN LSTDREIKNLK EL+SVK QMA LQ 
Sbjct: 506 NMQVLFSEQVKMRSAMQEKEKAPSSDSD-HDGNHLSTDREIKNLKTELESVKAQMAELQS 565

Query: 80  DYSELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDEPAQRRSSRLSSRVSLRDRL 139
           DYSELQQEYEK+SNKQKN+AGW FGWKKIKNSF TR+DGDEPA +R SR SSR+SLR RL
Sbjct: 566 DYSELQQEYEKISNKQKNIAGWGFGWKKIKNSFHTRIDGDEPAHQRHSRTSSRISLRRRL 625

Query: 140 SMT 143
           SMT
Sbjct: 626 SMT 627

BLAST of CmoCh04G008820 vs. NCBI nr
Match: gi|700198489|gb|KGN53647.1| (hypothetical protein Csa_4G095570 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 99/120 (82.50%), Postives = 106/120 (88.33%), Query Frame = 1

Query: 23  VLFSEQVKMRSAMQEKEKAPSSDNSVEDGNPLSTDREIKNLKEELQSVKTQMAGLQRDYS 82
           VLFSEQVKMRSAMQEKEKAPSSD+   DGN LSTDREIKNLK EL+SVK QMA LQ DYS
Sbjct: 498 VLFSEQVKMRSAMQEKEKAPSSDSD-HDGNHLSTDREIKNLKTELESVKAQMAELQSDYS 557

Query: 83  ELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDEPAQRRSSRLSSRVSLRDRLSMT 142
           ELQQEYEK+SNKQKN+AGW FGWKKIKNSF TR+DGDEPA +R SR SSR+SLR RLSMT
Sbjct: 558 ELQQEYEKISNKQKNIAGWGFGWKKIKNSFHTRIDGDEPAHQRHSRTSSRISLRRRLSMT 616

BLAST of CmoCh04G008820 vs. NCBI nr
Match: gi|659111284|ref|XP_008455672.1| (PREDICTED: putative BTB/POZ domain-containing protein DOT3 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 5.4e-42
Identity = 99/120 (82.50%), Postives = 104/120 (86.67%), Query Frame = 1

Query: 23  VLFSEQVKMRSAMQEKEKAPSSDNSVEDGNPLSTDREIKNLKEELQSVKTQMAGLQRDYS 82
           VLFSEQVKMRSAMQEKEKAPSSD+   DGN LST+REIKNLK EL+SVK QMA LQ DYS
Sbjct: 510 VLFSEQVKMRSAMQEKEKAPSSDSD-HDGNHLSTEREIKNLKTELESVKAQMAELQSDYS 569

Query: 83  ELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDEPAQRRSSRLSSRVSLRDRLSMT 142
           ELQQEYEK+SNKQKNVAGW FGW KIKNSF TRVDGDEPA  R SR SSR+SLR RLSMT
Sbjct: 570 ELQQEYEKISNKQKNVAGWGFGWMKIKNSFHTRVDGDEPAHLRPSRTSSRMSLRRRLSMT 628

BLAST of CmoCh04G008820 vs. NCBI nr
Match: gi|567871143|ref|XP_006428193.1| (hypothetical protein CICLE_v10025174mg [Citrus clementina])

HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1

Query: 23  VLFSEQVKMRSAMQEKEKAPSSDNSVEDGNPLSTDREIKNLKEELQSVKTQMAGLQRDYS 82
           VLFSEQVKMR+AMQEKE A   DNS +D    ST  EIKNL+EEL++VKT+MA LQ+DYS
Sbjct: 450 VLFSEQVKMRTAMQEKEPALQCDNSEQDDTQPSTSIEIKNLREELENVKTRMAALQKDYS 509

Query: 83  ELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDEPAQRRSSRLSS--RVSLRDRLS 142
           ELQ+EYEKLSNK K V+ W  GW+KIKNSF ++ D DE   RR +  S+  + S R R S
Sbjct: 510 ELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTGRQTSFRRRPS 569

BLAST of CmoCh04G008820 vs. NCBI nr
Match: gi|470105897|ref|XP_004289314.1| (PREDICTED: BTB/POZ domain-containing protein DOT3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27
Identity = 70/122 (57.38%), Postives = 91/122 (74.59%), Query Frame = 1

Query: 23  VLFSEQVKMRSAMQEKEKAPSSDNSVEDGNPLSTDREIKNLKEELQSVKTQMAGLQRDYS 82
           VLFSEQVKMR+A+Q KE AP+ +NS ++GN  STD EIKNLK EL++ K QMA LQ DYS
Sbjct: 502 VLFSEQVKMRTALQGKESAPNGNNSEQEGNHASTDAEIKNLKAELENAKKQMAELQSDYS 561

Query: 83  ELQQEYEKLSNKQKNVAGWVFGWKKIKNSFQTRVDGDE--PAQRRSSRLSSRVSLRDRLS 142
           ELQQEYEK+S+KQ++V+ W  GW+KIK SF T+ + +E    Q+R + +  R S R R S
Sbjct: 562 ELQQEYEKISSKQRSVSSWSSGWRKIKKSFHTKSEANETGEGQQRPNSIGGRFSFRRRSS 621

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DOT3_ARATH1.2e-2047.86BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KZ42_CUCSA1.2e-4382.50Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095570 PE=4 SV=1[more]
V4S250_9ROSI4.5e-2760.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025174mg PE=4 SV=1[more]
V4SR70_9ROSI4.5e-2760.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025174mg PE=4 SV=1[more]
V4UPK6_9ROSI4.5e-2760.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025174mg PE=4 SV=1[more]
A0A067EN03_CITSI5.0e-2659.50Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0070151mg PE=4 ... [more]
Match NameE-valueIdentityDescription
AT5G10250.16.6e-2247.86 Phototropic-responsive NPH3 family protein[more]
Match NameE-valueIdentityDescription
gi|778691784|ref|XP_011653350.1|9.9e-4481.30PREDICTED: LOW QUALITY PROTEIN: BTB/POZ domain-containing protein DOT3 [Cucumis ... [more]
gi|700198489|gb|KGN53647.1|1.7e-4382.50hypothetical protein Csa_4G095570 [Cucumis sativus][more]
gi|659111284|ref|XP_008455672.1|5.4e-4282.50PREDICTED: putative BTB/POZ domain-containing protein DOT3 [Cucumis melo][more]
gi|567871143|ref|XP_006428193.1|6.4e-2760.33hypothetical protein CICLE_v10025174mg [Citrus clementina][more]
gi|470105897|ref|XP_004289314.1|6.4e-2757.38PREDICTED: BTB/POZ domain-containing protein DOT3 [Fragaria vesca subsp. vesca][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
biological_process GO:0048513 animal organ development
biological_process GO:0048367 shoot system development
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G008820.1CmoCh04G008820.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 60..94
scor
NoneNo IPR availablePANTHERPTHR32370FAMILY NOT NAMEDcoord: 23..141
score: 9.3
NoneNo IPR availablePANTHERPTHR32370:SF37BTB/POZ DOMAIN-CONTAINING PROTEIN DOT3-RELATEDcoord: 23..141
score: 9.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G008820CmoCh16G007670Cucurbita moschata (Rifu)cmocmoB285