CmoCh04G008820 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGCAGTAGTCAATAGGCCAGCGTCAAAGACCAAATTTATACAATAAACAACAATCAAACGACACAGTAAAACAAACAGAATAGGTCCATCTCAGTCAATAATTGGAGTCTCAGCTCTAAGAAATTCGGACATACAAGTAGCCAGTCAATAGTTTAGAGTTCTAAGTGGTACTCACAATACTTCTGAGTGAATATGCAGGTTCTGTTTTCAGAGCAAGTGAAGATGAGGTCAGCCATGCAAGAGAAGGAGAAAGCACCCAGTAGTGATAATTCAGTTGAGGATGGAAACCCTTTATCAACAGACAGAGAGATTAAAAACCTCAAGGAAGAACTTCAGAGCGTGAAGACACAGATGGCAGGGTTGCAACGTGACTACTCGGAGCTGCAACAAGAGTATGAAAAACTAAGCAACAAGCAGAAAAATGTAGCAGGTTGGGTATTTGGTTGGAAGAAGATAAAGAATTCTTTCCAAACAAGAGTTGATGGAGATGAACCTGCCCAGCGTAGATCCAGCAGGCTTAGTTCTCGAGTGAGCTTAAGAGATAGATTATCAATGACCTGAAGCCTTGGAATAAGAGAATCCTCTAAAAGCTAAATAATTCAAAGAAGTTGCTATTCCACGTTTTTAATATTGTTCACCGTGCAGAATGCAG ATGGCGGCATCAATAGGCCAGCGTCAAAGACCAAATTTATACAATAAACAACAATCAAACGACACAGTTCTGTTTTCAGAGCAAGTGAAGATGAGGTCAGCCATGCAAGAGAAGGAGAAAGCACCCAGTAGTGATAATTCAGTTGAGGATGGAAACCCTTTATCAACAGACAGAGAGATTAAAAACCTCAAGGAAGAACTTCAGAGCGTGAAGACACAGATGGCAGGGTTGCAACGTGACTACTCGGAGCTGCAACAAGAGTATGAAAAACTAAGCAACAAGCAGAAAAATGTAGCAGGTTGGGTATTTGGTTGGAAGAAGATAAAGAATTCTTTCCAAACAAGAGTTGATGGAGATGAACCTGCCCAGCGTAGATCCAGCAGGCTTAGTTCTCGAGTGAGCTTAAGAGATAGATTATCAATGACCTGAAGCCTTGGAATAAGAGAATCCTCTAAAAGCTAAATAATTCAAAGAAGTTGCTATTCCACGTTTTTAATATTGTTCACCGTGCAGAATGCAG ATGGCGGCATCAATAGGCCAGCGTCAAAGACCAAATTTATACAATAAACAACAATCAAACGACACAGTTCTGTTTTCAGAGCAAGTGAAGATGAGGTCAGCCATGCAAGAGAAGGAGAAAGCACCCAGTAGTGATAATTCAGTTGAGGATGGAAACCCTTTATCAACAGACAGAGAGATTAAAAACCTCAAGGAAGAACTTCAGAGCGTGAAGACACAGATGGCAGGGTTGCAACGTGACTACTCGGAGCTGCAACAAGAGTATGAAAAACTAAGCAACAAGCAGAAAAATGTAGCAGGTTGGGTATTTGGTTGGAAGAAGATAAAGAATTCTTTCCAAACAAGAGTTGATGGAGATGAACCTGCCCAGCGTAGATCCAGCAGGCTTAGTTCTCGAGTGAGCTTAAGAGATAGATTATCAATGACCTGA
BLAST of CmoCh04G008820 vs. Swiss-Prot
Match: DOT3_ARATH (BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=2 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.2e-20 Identity = 67/140 (47.86%), Postives = 87/140 (62.14%), Query Frame = 1
BLAST of CmoCh04G008820 vs. TrEMBL
Match: A0A0A0KZ42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095570 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43 Identity = 99/120 (82.50%), Postives = 106/120 (88.33%), Query Frame = 1
BLAST of CmoCh04G008820 vs. TrEMBL
Match: V4S250_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025174mg PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 4.5e-27 Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1
BLAST of CmoCh04G008820 vs. TrEMBL
Match: V4SR70_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025174mg PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 4.5e-27 Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1
BLAST of CmoCh04G008820 vs. TrEMBL
Match: V4UPK6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025174mg PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 4.5e-27 Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1
BLAST of CmoCh04G008820 vs. TrEMBL
Match: A0A067EN03_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0070151mg PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 5.0e-26 Identity = 72/121 (59.50%), Postives = 86/121 (71.07%), Query Frame = 1
BLAST of CmoCh04G008820 vs. TAIR10
Match: AT5G10250.1 (AT5G10250.1 Phototropic-responsive NPH3 family protein) HSP 1 Score: 100.9 bits (250), Expect = 6.6e-22 Identity = 67/140 (47.86%), Postives = 87/140 (62.14%), Query Frame = 1
BLAST of CmoCh04G008820 vs. NCBI nr
Match: gi|778691784|ref|XP_011653350.1| (PREDICTED: LOW QUALITY PROTEIN: BTB/POZ domain-containing protein DOT3 [Cucumis sativus]) HSP 1 Score: 184.9 bits (468), Expect = 9.9e-44 Identity = 100/123 (81.30%), Postives = 107/123 (86.99%), Query Frame = 1
BLAST of CmoCh04G008820 vs. NCBI nr
Match: gi|700198489|gb|KGN53647.1| (hypothetical protein Csa_4G095570 [Cucumis sativus]) HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43 Identity = 99/120 (82.50%), Postives = 106/120 (88.33%), Query Frame = 1
BLAST of CmoCh04G008820 vs. NCBI nr
Match: gi|659111284|ref|XP_008455672.1| (PREDICTED: putative BTB/POZ domain-containing protein DOT3 [Cucumis melo]) HSP 1 Score: 179.1 bits (453), Expect = 5.4e-42 Identity = 99/120 (82.50%), Postives = 104/120 (86.67%), Query Frame = 1
BLAST of CmoCh04G008820 vs. NCBI nr
Match: gi|567871143|ref|XP_006428193.1| (hypothetical protein CICLE_v10025174mg [Citrus clementina]) HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27 Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1
BLAST of CmoCh04G008820 vs. NCBI nr
Match: gi|470105897|ref|XP_004289314.1| (PREDICTED: BTB/POZ domain-containing protein DOT3 [Fragaria vesca subsp. vesca]) HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27 Identity = 70/122 (57.38%), Postives = 91/122 (74.59%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |