CmoCh04G008180 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G008180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 4074409 .. 4074630 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGCGAGGACGCTGAGGTGTCCCTTCAGTGCGTGGTTAAGCTGCTGAAGAGGAAGAAGCTGGAAGAGGAAAAGAATGGTAATGGCGAAGAAGGAGAAGAAGATAAGGTGAGAGCGGCGAAGAGATTGAAAGTTCTGGCGAAGAAGAAGGTGGCGGGAATGGTTACGAGAAGGAAGTTTGTCAGAAGGAATTTGTCAGAGGCTGAGATTAATTTCTAA

mRNA sequence

ATGAAGAGCGAGGACGCTGAGGTGTCCCTTCAGTGCGTGGTTAAGCTGCTGAAGAGGAAGAAGCTGGAAGAGGAAAAGAATGGTAATGGCGAAGAAGGAGAAGAAGATAAGGTGAGAGCGGCGAAGAGATTGAAAGTTCTGGCGAAGAAGAAGGTGGCGGGAATGGTTACGAGAAGGAAGTTTGTCAGAAGGAATTTGTCAGAGGCTGAGATTAATTTCTAA

Coding sequence (CDS)

ATGAAGAGCGAGGACGCTGAGGTGTCCCTTCAGTGCGTGGTTAAGCTGCTGAAGAGGAAGAAGCTGGAAGAGGAAAAGAATGGTAATGGCGAAGAAGGAGAAGAAGATAAGGTGAGAGCGGCGAAGAGATTGAAAGTTCTGGCGAAGAAGAAGGTGGCGGGAATGGTTACGAGAAGGAAGTTTGTCAGAAGGAATTTGTCAGAGGCTGAGATTAATTTCTAA
Homology
[Close]
BLAST of CmoCh04G008180 vs. TrEMBL
Match: A0A0A0KUR3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046070 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-07
Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = 1 

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEK-------------------NGNGEEGEED-KVRA 60
           MKSED +VSLQ +VKLLKRKKLE+E+                   N N E  EE+ K+R 
Sbjct: 429 MKSEDPDVSLQGLVKLLKRKKLEQEEEEDNGNTNGIINGISNGKSNDNSENSEEEGKLRE 488

Query: 61  AKRLKVLAKKKVAGMVTRRKFVR 64
           AKRLK+ A KKV   VTRRKFVR
Sbjct: 489 AKRLKIEAGKKVGTKVTRRKFVR 511

[Close]
BLAST of CmoCh04G008180 vs. NCBI nr
Match: gi|659102386|ref|XP_008452101.1| (PREDICTED: mitochondrial chaperone BCS1-like [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEK------NGNG-------EEGEEDKVRAAKRLKVL 60
           MKSED +VSLQ +VKLLKRKKLE+E+      NGNG       ++GEE K+R  KRLKV 
Sbjct: 429 MKSEDPDVSLQGLVKLLKRKKLEQEEEDNGNTNGNGDNNDNSEDDGEEGKLRETKRLKVE 488

Query: 61  AKKKVAGMVTRRKFVR 64
           A+KKV    TRRKF+R
Sbjct: 489 ARKKVGTKGTRRKFLR 504

[Close]
BLAST of CmoCh04G008180 vs. NCBI nr
Match: gi|449457628|ref|XP_004146550.1| (PREDICTED: probable mitochondrial chaperone BCS1-B [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = 1 

Query: 1   MKSEDAEVSLQCVVKLLKRKKLEEEK-------------------NGNGEEGEED-KVRA 60
           MKSED +VSLQ +VKLLKRKKLE+E+                   N N E  EE+ K+R 
Sbjct: 429 MKSEDPDVSLQGLVKLLKRKKLEQEEEEDNGNTNGIINGISNGKSNDNSENSEEEGKLRE 488

Query: 61  AKRLKVLAKKKVAGMVTRRKFVR 64
           AKRLK+ A KKV   VTRRKFVR
Sbjct: 489 AKRLKIEAGKKVGTKVTRRKFVR 511

The following BLAST results are available for this feature:
BLAST of CmoCh04G008180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G008180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUR3_CUCSA7.7e-0753.01Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046070 PE=3 SV=1[more]
BLAST of CmoCh04G008180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G008180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102386|ref|XP_008452101.1|3.4e-0857.89PREDICTED: mitochondrial chaperone BCS1-like [Cucumis melo][more]
gi|449457628|ref|XP_004146550.1|1.1e-0653.01PREDICTED: probable mitochondrial chaperone BCS1-B [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G008180.1CmoCh04G008180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G008180Carg14164Silver-seed gourdcarcmoB1259
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G008180Cucumber (Chinese Long) v3cmocucB0833
CmoCh04G008180Watermelon (97103) v2cmowmbB682
CmoCh04G008180Watermelon (97103) v2cmowmbB748
CmoCh04G008180Wax gourdcmowgoB0843
CmoCh04G008180Cucurbita moschata (Rifu)cmocmoB285
CmoCh04G008180Cucurbita moschata (Rifu)cmocmoB451
CmoCh04G008180Cucumber (Gy14) v1cgycmoB0596
CmoCh04G008180Cucurbita maxima (Rimu)cmacmoB337
CmoCh04G008180Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G008180Wild cucumber (PI 183967)cmocpiB715
CmoCh04G008180Wild cucumber (PI 183967)cmocpiB775
CmoCh04G008180Cucumber (Chinese Long) v2cmocuB705
CmoCh04G008180Melon (DHL92) v3.5.1cmomeB686
CmoCh04G008180Melon (DHL92) v3.5.1cmomeB702
CmoCh04G008180Watermelon (Charleston Gray)cmowcgB641
CmoCh04G008180Watermelon (Charleston Gray)cmowcgB670
CmoCh04G008180Watermelon (97103) v1cmowmB671
CmoCh04G008180Watermelon (97103) v1cmowmB711
CmoCh04G008180Cucurbita pepo (Zucchini)cmocpeB655
CmoCh04G008180Cucurbita pepo (Zucchini)cmocpeB667
CmoCh04G008180Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G008180Cucurbita pepo (Zucchini)cmocpeB684
CmoCh04G008180Bottle gourd (USVL1VR-Ls)cmolsiB632
CmoCh04G008180Bottle gourd (USVL1VR-Ls)cmolsiB692
CmoCh04G008180Melon (DHL92) v3.6.1cmomedB779
CmoCh04G008180Cucumber (Gy14) v2cgybcmoB521
CmoCh04G008180Melon (DHL92) v3.6.1cmomedB797
CmoCh04G008180Silver-seed gourdcarcmoB1371