CmoCh04G006630 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G006630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal protein L27
Location	Cmo_Chr04 : 3296734 .. 3297141 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAATTCCTCAAGCAGAACAAGGCCGTCATCGTCCTTCAAGGACGTTACGCCGGTCGGAAGGCGGTCATCATTCGCGCCTTTGACGACGGAACTCGGGATCGTGCTTATGGTCACTGCTTGGTCGCCGGACTCAAGAAGTATCCGTCGAAGGTCATTAGGAAGGATTCTTCTAAGAAGACTGCTAAGAAGTCCAGAGTCAAGGCCTTCATTAAGCTTGTTAATTACAGACATCTAATGCCGACCAGGTACACTCTCGATGTAGATCTAAAGGATGTCGTCACCGTCGATTCCTTGCAGTCGAAGGACAAGAAGGTCACAGCCGCTAAAGAGACCAAGAAGAGATTCGAGGAGAGGTTCAAAACCGGCAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA

mRNA sequence

ATGGTGAAATTCCTCAAGCAGAACAAGGCCGTCATCGTCCTTCAAGGACGTTACGCCGGTCGGAAGGCGGTCATCATTCGCGCCTTTGACGACGGAACTCGGGATCGTGCTTATGGTCACTGCTTGGTCGCCGGACTCAAGAAGTATCCGTCGAAGGTCATTAGGAAGGATTCTTCTAAGAAGACTGCTAAGAAGTCCAGAGTCAAGGCCTTCATTAAGCTTGTTAATTACAGACATCTAATGCCGACCAGGTACACTCTCGATGTAGATCTAAAGGATGTCGTCACCGTCGATTCCTTGCAGTCGAAGGACAAGAAGGTCACAGCCGCTAAAGAGACCAAGAAGAGATTCGAGGAGAGGTTCAAAACCGGCAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA

Coding sequence (CDS)

ATGGTGAAATTCCTCAAGCAGAACAAGGCCGTCATCGTCCTTCAAGGACGTTACGCCGGTCGGAAGGCGGTCATCATTCGCGCCTTTGACGACGGAACTCGGGATCGTGCTTATGGTCACTGCTTGGTCGCCGGACTCAAGAAGTATCCGTCGAAGGTCATTAGGAAGGATTCTTCTAAGAAGACTGCTAAGAAGTCCAGAGTCAAGGCCTTCATTAAGCTTGTTAATTACAGACATCTAATGCCGACCAGGTACACTCTCGATGTAGATCTAAAGGATGTCGTCACCGTCGATTCCTTGCAGTCGAAGGACAAGAAGGTCACAGCCGCTAAAGAGACCAAGAAGAGATTCGAGGAGAGGTTCAAAACCGGCAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA

Homology

[Close]

BLAST of CmoCh04G006630 vs. Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 231.1 bits (588), Expect = 7.2e-60
Identity = 116/135 (85.93%), Postives = 126/135 (93.33%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAGLKKYPSKVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 231.1 bits (588), Expect = 7.2e-60
Identity = 116/135 (85.93%), Postives = 127/135 (94.07%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAGLKKYPSKVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.0e-58
Identity = 113/135 (83.70%), Postives = 125/135 (92.59%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLK NKAVI+LQGRYAG+KAVI++ FDDGTR++ YGHCLVAG+KK+PSKVI+KDS+K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK  EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.4e-54
Identity = 103/135 (76.30%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAGLKKYPSKVIRKDS+K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 7.2e-52
Identity = 107/139 (76.98%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           M KFLK NKAVI+LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAG+ +YP KVIRKDS+K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVTVDSLQSKDKKVTAAKETKKR 120
           K  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV  D LQ++DKKVT A+ TK R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVT-ARRTKAR 120

Query: 121 FEERFKTGKNRWFFTKLRF 136
             ERFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]

BLAST of CmoCh04G006630 vs. TrEMBL
Match: A0A0A0KVB4_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G062360 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.0e-65
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. TrEMBL
Match: A0A0A0KXF9_CUCSA (60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G061860 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 8.8e-65
Identity = 128/135 (94.81%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. TrEMBL
Match: W9SC93_9ROSA (60S ribosomal protein L27 OS=Morus notabilis GN=L484_017735 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-61
Identity = 123/135 (91.11%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+R FD+GTRDRAYGHCLVAG+KKYPSKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVILRTFDEGTRDRAYGHCLVAGIKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKDVVT D+LQSKDKKVTA KETKKR EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVTTDALQSKDKKVTALKETKKRLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. TrEMBL
Match: A0A0D2PJQ1_GOSRA (60S ribosomal protein L27 OS=Gossypium raimondii GN=B456_001G213400 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.5e-61
Identity = 122/135 (90.37%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+R+FDDGTRDRAYGHCLVAG+KKYPSKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRSFDDGTRDRAYGHCLVAGIKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLKDVVTVD+LQ+KDKKV A K TK+RFEER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKDVVTVDALQTKDKKVAACKATKERFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. TrEMBL
Match: I3NMK9_HEVBR (60S ribosomal protein L27 OS=Hevea brasiliensis GN=RPL27C PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.9e-61
Identity = 121/135 (89.63%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLK NKAVI+LQGRYAGRKAVI+++FDDGTRDRAYGHCLVAG+KKYPSKVI+KDS+K
Sbjct: 1   MVKFLKPNKAVIILQGRYAGRKAVIVKSFDDGTRDRAYGHCLVAGIKKYPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLKDVVTVD+LQSK+KKV AAKETK RFEER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKDVVTVDALQSKEKKVGAAKETKARFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. TAIR10
Match: AT3G22230.1 (AT3G22230.1 Ribosomal L27e protein family)

HSP 1 Score: 231.1 bits (588), Expect = 4.0e-61
Identity = 116/135 (85.93%), Postives = 127/135 (94.07%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAGLKKYPSKVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. TAIR10
Match: AT4G15000.1 (AT4G15000.1 Ribosomal L27e protein family)

HSP 1 Score: 231.1 bits (588), Expect = 4.0e-61
Identity = 116/135 (85.93%), Postives = 126/135 (93.33%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAGLKKYPSKVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. TAIR10
Match: AT2G32220.1 (AT2G32220.1 Ribosomal L27e protein family)

HSP 1 Score: 212.2 bits (539), Expect = 1.9e-55
Identity = 103/135 (76.30%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAGLKKYPSKVIRKDS+K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. NCBI nr
Match: gi|449460012|ref|XP_004147740.1| (PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 5.7e-65
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. NCBI nr
Match: gi|449460010|ref|XP_004147739.1| (PREDICTED: 60S ribosomal protein L27 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 1.3e-64
Identity = 128/135 (94.81%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. NCBI nr
Match: gi|659101899|ref|XP_008451849.1| (PREDICTED: 60S ribosomal protein L27-like [Cucumis melo])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-64
Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. NCBI nr
Match: gi|659101908|ref|XP_008451854.1| (PREDICTED: 60S ribosomal protein L27 [Cucumis melo])

HSP 1 Score: 252.7 bits (644), Expect = 3.7e-64
Identity = 127/135 (94.07%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of CmoCh04G006630 vs. NCBI nr
Match: gi|703161847|ref|XP_010112899.1| (60S ribosomal protein L27 [Morus notabilis])

HSP 1 Score: 243.8 bits (621), Expect = 1.7e-61
Identity = 123/135 (91.11%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGLKKYPSKVIRKDSSK 60
           MVKFLK NKAVIVLQGRYAGRKAVI+R FD+GTRDRAYGHCLVAG+KKYPSKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVILRTFDEGTRDRAYGHCLVAGIKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKDVVT D+LQSKDKKVTA KETKKR EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVTTDALQSKDKKVTALKETKKRLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

The following BLAST results are available for this feature:

BLAST of CmoCh04G006630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL273_ARATH	7.2e-60	85.93	60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2	[more]
RL272_ARATH	7.2e-60	85.93	60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2	[more]
RL27_PEA	1.0e-58	83.70	60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1	[more]
RL271_ARATH	3.4e-54	76.30	60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1	[more]
RL27_SOLTU	7.2e-52	76.98	60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1	[more]

BLAST of CmoCh04G006630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVB4_CUCSA	4.0e-65	97.04	60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G062360 PE=3 SV=1	[more]
A0A0A0KXF9_CUCSA	8.8e-65	94.81	60S ribosomal protein L27 OS=Cucumis sativus GN=Csa_4G061860 PE=3 SV=1	[more]
W9SC93_9ROSA	1.2e-61	91.11	60S ribosomal protein L27 OS=Morus notabilis GN=L484_017735 PE=3 SV=1	[more]
A0A0D2PJQ1_GOSRA	3.5e-61	90.37	60S ribosomal protein L27 OS=Gossypium raimondii GN=B456_001G213400 PE=3 SV=1	[more]
I3NMK9_HEVBR	5.9e-61	89.63	60S ribosomal protein L27 OS=Hevea brasiliensis GN=RPL27C PE=2 SV=1	[more]

BLAST of CmoCh04G006630 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22230.1	4.0e-61	85.93	Ribosomal L27e protein family	[more]
AT4G15000.1	4.0e-61	85.93	Ribosomal L27e protein family	[more]
AT2G32220.1	1.9e-55	76.30	Ribosomal L27e protein family	[more]

BLAST of CmoCh04G006630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460012\|ref\|XP_004147740.1\|	5.7e-65	97.04	PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus]	[more]
gi\|449460010\|ref\|XP_004147739.1\|	1.3e-64	94.81	PREDICTED: 60S ribosomal protein L27 [Cucumis sativus]	[more]
gi\|659101899\|ref\|XP_008451849.1\|	2.2e-64	95.56	PREDICTED: 60S ribosomal protein L27-like [Cucumis melo]	[more]
gi\|659101908\|ref\|XP_008451854.1\|	3.7e-64	94.07	PREDICTED: 60S ribosomal protein L27 [Cucumis melo]	[more]
gi\|703161847\|ref\|XP_010112899.1\|	1.7e-61	91.11	60S ribosomal protein L27 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001141	Ribosomal_L27e
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2
IPR018262	Ribosomal_L27e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G006630.1	CmoCh04G006630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001141	Ribosomal protein L27e	PRODOM	PD009396		coord: 60..135 score: 2.0
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 2..135 score: 5.5
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 52..135 score: 5.7
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 3..135 score: 1.5
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 3..117 score: 2.6
IPR018262	Ribosomal protein L27e, conserved site	PROSITE	PS01107	RIBOSOMAL_L27E	coord: 124..135 scor
None	No IPR available	unknown	Coil	Coil	coord: 100..120 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G006630	Cucurbita pepo (Zucchini)	cmocpeB670
CmoCh04G006630	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G006630	Bottle gourd (USVL1VR-Ls)	cmolsiB689
CmoCh04G006630	Cucumber (Gy14) v2	cgybcmoB515
CmoCh04G006630	Melon (DHL92) v3.6.1	cmomedB787
CmoCh04G006630	Silver-seed gourd	carcmoB0058
CmoCh04G006630	Silver-seed gourd	carcmoB0902
CmoCh04G006630	Cucumber (Chinese Long) v3	cmocucB0827
CmoCh04G006630	Watermelon (97103) v2	cmowmbB756
CmoCh04G006630	Wax gourd	cmowgoB0844
CmoCh04G006630	Cucurbita moschata (Rifu)	cmocmoB288
CmoCh04G006630	Cucumber (Gy14) v1	cgycmoB0512
CmoCh04G006630	Cucurbita maxima (Rimu)	cmacmoB340
CmoCh04G006630	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G006630	Wild cucumber (PI 183967)	cmocpiB707
CmoCh04G006630	Cucumber (Chinese Long) v2	cmocuB699
CmoCh04G006630	Melon (DHL92) v3.5.1	cmomeB693
CmoCh04G006630	Watermelon (Charleston Gray)	cmowcgB677
CmoCh04G006630	Watermelon (97103) v1	cmowmB686