CmoCh04G006000 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G006000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Homogentisate 1,2-dioxygenase) (1.13.11.5)
LocationCmo_Chr04 : 2993659 .. 2994253 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTGATACTAAAACATACGAGGTATGCGTTGCTTCTTTTAAGTTCCATTATTCATTTAATTTCCGCCACATTCAAACTTTCTTCTTCACAAGATTCTCTGGTGGCATTTCGTAGTTGTAAGGTATTTAATTCTAGAGAAGTAGTCATTGTGGCATGACCGGATTCCCTCTAAAACCTCTAAGCCCTTTATAGATTACATGATCCTTATTGCCCACTATGTCAACTCATGGAAGTTTACTTGGAAAGCTACAAATGGATCTTCTCATTCTTCCAACAGTGTATACTTTTAGTTTAAACCATTCCTTTTATGATTCGACGAAAAGTCAGTAAGCATTCTCTTGATTTAGGCCACTATTGCTCGAGGAAACGAGGCTGGACCTTATCGAATCACCGACACAATGGCATTTATGTTTGAATCAAGTCTGATCCCTCGCGTATGCTCTTGGGCTCTGGAGTCTCCATGCATGGATCATGACTACTACCAATGCTGGATAGGATTGAAATCTCATTTCACAAGTGAAGGAACAACTAGAGACATGGATCCACAGAAGGTAAAAACTGATGTTGAAAATGGAAGACAGACTGTGTAG

mRNA sequence

ATGGCCCTGATACTAAAACATACGAGTTCCATTATTCATTTAATTTCCGCCACATTCAAACTTTCTTCTTCACAAGATTCTCTGGTGGCATTTCGTAGTTGTAAGTCATTGTGGCATGACCGGATTCCCTCTAAAACCTCTAAGCCCTTTATAGATTACATGATCCTTATTGCCCACTATGTCAACTCATGGAAGTTTACTTGGAAAGCTACAAATGGATCTTCTCATTCTTCCAACAGTGCCACTATTGCTCGAGGAAACGAGGCTGGACCTTATCGAATCACCGACACAATGGCATTTATGTTTGAATCAAGTCTGATCCCTCGCGTATGCTCTTGGGCTCTGGAGTCTCCATGCATGGATCATGACTACTACCAATGCTGGATAGGATTGAAATCTCATTTCACAAGTGAAGGAACAACTAGAGACATGGATCCACAGAAGGTAAAAACTGATGTTGAAAATGGAAGACAGACTGTGTAG

Coding sequence (CDS)

ATGGCCCTGATACTAAAACATACGAGTTCCATTATTCATTTAATTTCCGCCACATTCAAACTTTCTTCTTCACAAGATTCTCTGGTGGCATTTCGTAGTTGTAAGTCATTGTGGCATGACCGGATTCCCTCTAAAACCTCTAAGCCCTTTATAGATTACATGATCCTTATTGCCCACTATGTCAACTCATGGAAGTTTACTTGGAAAGCTACAAATGGATCTTCTCATTCTTCCAACAGTGCCACTATTGCTCGAGGAAACGAGGCTGGACCTTATCGAATCACCGACACAATGGCATTTATGTTTGAATCAAGTCTGATCCCTCGCGTATGCTCTTGGGCTCTGGAGTCTCCATGCATGGATCATGACTACTACCAATGCTGGATAGGATTGAAATCTCATTTCACAAGTGAAGGAACAACTAGAGACATGGATCCACAGAAGGTAAAAACTGATGTTGAAAATGGAAGACAGACTGTGTAG
BLAST of CmoCh04G006000 vs. Swiss-Prot
Match: HGD_ARATH (Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 5.0e-20
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G   ++  ATIAR N   P ++T TMAFMFES+LIPRVC WALESP +DHDYYQCWIGL
Sbjct: 377 HGPDTTTYEATIARVNAMAPSKLTGTMAFMFESALIPRVCHWALESPFLDHDYYQCWIGL 436

Query: 132 KSHFT 137
           KSHF+
Sbjct: 437 KSHFS 441

BLAST of CmoCh04G006000 vs. Swiss-Prot
Match: HGD_ORYSJ (Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G    +  ATI+R +   P R++ T+AFMFES+LIPRVC WAL+SP  D DYYQCWIGL
Sbjct: 392 HGPDTKTYEATISRPDANEPSRLSGTLAFMFESALIPRVCQWALDSPSRDLDYYQCWIGL 451

Query: 132 KSHFTSE 139
           KSHF+ +
Sbjct: 452 KSHFSHD 458

BLAST of CmoCh04G006000 vs. Swiss-Prot
Match: HGD_CUPPJ (Homogentisate 1,2-dioxygenase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=hmgA PE=3 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-08
Identity = 29/65 (44.62%), Postives = 37/65 (56.92%), Query Frame = 1

Query: 74  SSHSSNSATIARGNEAG---PYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIG 133
           S H  ++ T A+   A    P+ ITDTMAFMFE+  + R   +A  S  +  DYY CW G
Sbjct: 370 SGHGPDADTFAKATSADTSTPHHITDTMAFMFETPGVIRPTPYAARSASLQQDYYTCWQG 429

Query: 134 LKSHF 136
           LK HF
Sbjct: 430 LKKHF 434

BLAST of CmoCh04G006000 vs. Swiss-Prot
Match: HGD_MOUSE (Homogentisate 1,2-dioxygenase OS=Mus musculus GN=Hgd PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 9.9e-08
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1

Query: 91  PYRITD-TMAFMFESSLIPRVCSWALES-PCMDHDYYQCWIGLKSHFT 137
           P RI D TMAFMFESSL   V  W L++  C+D +YY+CW  L+SHFT
Sbjct: 388 PERIADGTMAFMFESSLSLAVTKWGLKTCSCLDENYYKCWEPLRSHFT 435

BLAST of CmoCh04G006000 vs. Swiss-Prot
Match: HGD_BORBR (Homogentisate 1,2-dioxygenase OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=hmgA PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 1

Query: 74  SSHSSNSATIARGNEAGP---YRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIG 133
           S H  ++ T  + + A     + I DTMAFMFE+  + R  + AL SP    DYYQCW G
Sbjct: 363 SGHGPDADTFEKASHADTSQAHYIRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQG 422

Query: 134 LKSHFTSE 139
           L+ HF  E
Sbjct: 423 LQKHFDPE 430

BLAST of CmoCh04G006000 vs. TrEMBL
Match: A0A0A0KYZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G088750 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.9e-27
Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G    +  ATIARGN+AGP++I+ TMAFMFESSLIPRVCSWALESP +DHDYYQCWIGL
Sbjct: 384 HGPDTKTYEATIARGNDAGPHKISGTMAFMFESSLIPRVCSWALESPFIDHDYYQCWIGL 443

Query: 132 KSHFTSEGTTRDMDPQKVKTDVENGRQ 159
           KSHF +E    D DPQKV+ + ENGRQ
Sbjct: 444 KSHFKNE-AIGDTDPQKVRIESENGRQ 469

BLAST of CmoCh04G006000 vs. TrEMBL
Match: A0A067ETR6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011768mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-23
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G    +  ATIARG+EAGPY+ITDTMAFMFES LIPR+C WALESP MDHDYY+CWIGL
Sbjct: 390 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGL 449

Query: 132 KSHFTSEGTTRDMDPQKVKTDVE 155
           +SHF+ E    + D +    D+E
Sbjct: 450 RSHFSYEEADNESDGELTMWDME 472

BLAST of CmoCh04G006000 vs. TrEMBL
Match: A0A067F4S9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011768mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-23
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G    +  ATIARG+EAGPY+ITDTMAFMFES LIPR+C WALESP MDHDYY+CWIGL
Sbjct: 386 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGL 445

Query: 132 KSHFTSEGTTRDMDPQKVKTDVE 155
           +SHF+ E    + D +    D+E
Sbjct: 446 RSHFSYEEADNESDGELTMWDME 468

BLAST of CmoCh04G006000 vs. TrEMBL
Match: A0A067ETI5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011768mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-23
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G    +  ATIARG+EAGPY+ITDTMAFMFES LIPR+C WALESP MDHDYY+CWIGL
Sbjct: 245 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGL 304

Query: 132 KSHFTSEGTTRDMDPQKVKTDVE 155
           +SHF+ E    + D +    D+E
Sbjct: 305 RSHFSYEEADNESDGELTMWDME 327

BLAST of CmoCh04G006000 vs. TrEMBL
Match: A0A068UEB1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021307001 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.6e-23
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G    S  ATIA G+EAGP +I DTMAFMFES LIPRVC WALESP MDHDYYQCWIGL
Sbjct: 385 HGPDTKSYEATIALGSEAGPQKIADTMAFMFESCLIPRVCQWALESPNMDHDYYQCWIGL 444

Query: 132 KSHFTSEGTTRDMDPQKVKTDVENG 157
           KSHFT E  T +       TD++NG
Sbjct: 445 KSHFTCEAATVE------NTDLQNG 463

BLAST of CmoCh04G006000 vs. TAIR10
Match: AT5G54080.1 (AT5G54080.1 homogentisate 1,2-dioxygenase)

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-21
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G   ++  ATIAR N   P ++T TMAFMFES+LIPRVC WALESP +DHDYYQCWIGL
Sbjct: 377 HGPDTTTYEATIARVNAMAPSKLTGTMAFMFESALIPRVCHWALESPFLDHDYYQCWIGL 436

Query: 132 KSHFT 137
           KSHF+
Sbjct: 437 KSHFS 441

BLAST of CmoCh04G006000 vs. NCBI nr
Match: gi|659101616|ref|XP_008451701.1| (PREDICTED: homogentisate 1,2-dioxygenase [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 4.3e-27
Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G    +  ATIARGN+AGP++I+ TMAFMFESSLIPRVCSWALESP MDHDYYQCWIGL
Sbjct: 405 HGPDTKTYEATIARGNDAGPHKISGTMAFMFESSLIPRVCSWALESPFMDHDYYQCWIGL 464

Query: 132 KSHFTSEGTTRDMDPQKVKTDVENGRQ 159
           KSHF +E    D DPQKV+   ENGRQ
Sbjct: 465 KSHFKNE-AIGDTDPQKVRIKSENGRQ 490

BLAST of CmoCh04G006000 vs. NCBI nr
Match: gi|449438877|ref|XP_004137214.1| (PREDICTED: homogentisate 1,2-dioxygenase [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27
Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G    +  ATIARGN+AGP++I+ TMAFMFESSLIPRVCSWALESP +DHDYYQCWIGL
Sbjct: 384 HGPDTKTYEATIARGNDAGPHKISGTMAFMFESSLIPRVCSWALESPFIDHDYYQCWIGL 443

Query: 132 KSHFTSEGTTRDMDPQKVKTDVENGRQ 159
           KSHF +E    D DPQKV+ + ENGRQ
Sbjct: 444 KSHFKNE-AIGDTDPQKVRIESENGRQ 469

BLAST of CmoCh04G006000 vs. NCBI nr
Match: gi|641839569|gb|KDO58497.1| (hypothetical protein CISIN_1g011768mg [Citrus sinensis])

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-23
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G    +  ATIARG+EAGPY+ITDTMAFMFES LIPR+C WALESP MDHDYY+CWIGL
Sbjct: 386 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGL 445

Query: 132 KSHFTSEGTTRDMDPQKVKTDVE 155
           +SHF+ E    + D +    D+E
Sbjct: 446 RSHFSYEEADNESDGELTMWDME 468

BLAST of CmoCh04G006000 vs. NCBI nr
Match: gi|568884307|ref|XP_006494848.1| (PREDICTED: homogentisate 1,2-dioxygenase [Citrus sinensis])

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-23
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G    +  ATIARG+EAGPY+ITDTMAFMFES LIPR+C WALESP MDHDYY+CWIGL
Sbjct: 390 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGL 449

Query: 132 KSHFTSEGTTRDMDPQKVKTDVE 155
           +SHF+ E    + D +    D+E
Sbjct: 450 RSHFSYEEADNESDGELTMWDME 472

BLAST of CmoCh04G006000 vs. NCBI nr
Match: gi|641839571|gb|KDO58499.1| (hypothetical protein CISIN_1g011768mg [Citrus sinensis])

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-23
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1

Query: 72  NGSSHSSNSATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGL 131
           +G    +  ATIARG+EAGPY+ITDTMAFMFES LIPR+C WALESP MDHDYY+CWIGL
Sbjct: 245 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGL 304

Query: 132 KSHFTSEGTTRDMDPQKVKTDVE 155
           +SHF+ E    + D +    D+E
Sbjct: 305 RSHFSYEEADNESDGELTMWDME 327

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
HGD_ARATH5.0e-2067.69Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2[more]
HGD_ORYSJ1.2e-1658.21Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1[more]
HGD_CUPPJ3.4e-0844.62Homogentisate 1,2-dioxygenase OS=Cupriavidus pinatubonensis (strain JMP 134 / LM... [more]
HGD_MOUSE9.9e-0858.33Homogentisate 1,2-dioxygenase OS=Mus musculus GN=Hgd PE=1 SV=2[more]
HGD_BORBR3.7e-0742.65Homogentisate 1,2-dioxygenase OS=Bordetella bronchiseptica (strain ATCC BAA-588 ... [more]
Match NameE-valueIdentityDescription
A0A0A0KYZ6_CUCSA3.9e-2770.11Uncharacterized protein OS=Cucumis sativus GN=Csa_4G088750 PE=4 SV=1[more]
A0A067ETR6_CITSI3.4e-2362.65Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011768mg PE=4 SV=1[more]
A0A067F4S9_CITSI3.4e-2362.65Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011768mg PE=4 SV=1[more]
A0A067ETI5_CITSI3.4e-2362.65Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011768mg PE=4 SV=1[more]
A0A068UEB1_COFCA7.6e-2365.88Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021307001 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G54080.12.8e-2167.69 homogentisate 1,2-dioxygenase[more]
Match NameE-valueIdentityDescription
gi|659101616|ref|XP_008451701.1|4.3e-2771.26PREDICTED: homogentisate 1,2-dioxygenase [Cucumis melo][more]
gi|449438877|ref|XP_004137214.1|5.6e-2770.11PREDICTED: homogentisate 1,2-dioxygenase [Cucumis sativus][more]
gi|641839569|gb|KDO58497.1|4.9e-2362.65hypothetical protein CISIN_1g011768mg [Citrus sinensis][more]
gi|568884307|ref|XP_006494848.1|4.9e-2362.65PREDICTED: homogentisate 1,2-dioxygenase [Citrus sinensis][more]
gi|641839571|gb|KDO58499.1|4.9e-2362.65hypothetical protein CISIN_1g011768mg [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005708Homogentis_dOase
IPR011051RmlC_Cupin_sf
Vocabulary: Molecular Function
TermDefinition
GO:0004411homogentisate 1,2-dioxygenase activity
Vocabulary: Biological Process
TermDefinition
GO:0006559L-phenylalanine catabolic process
GO:0006570tyrosine metabolic process
GO:0055114oxidation-reduction process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006559 L-phenylalanine catabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0042207 styrene catabolic process
biological_process GO:0006570 tyrosine metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004411 homogentisate 1,2-dioxygenase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G006000.1CmoCh04G006000.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005708Homogentisate 1,2-dioxygenasePANTHERPTHR11056HOMOGENTISATE 1,2-DIOXYGENASEcoord: 84..141
score: 1.3
IPR005708Homogentisate 1,2-dioxygenasePFAMPF04209HgmAcoord: 79..135
score: 4.4
IPR011051RmlC-like cupin domainunknownSSF51182RmlC-like cupinscoord: 84..138
score: 2.1
NoneNo IPR availablePANTHERPTHR11056:SF0HOMOGENTISATE 1,2-DIOXYGENASEcoord: 84..141
score: 1.3

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None