CmoCh04G006000 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCCTGATACTAAAACATACGAGGTATGCGTTGCTTCTTTTAAGTTCCATTATTCATTTAATTTCCGCCACATTCAAACTTTCTTCTTCACAAGATTCTCTGGTGGCATTTCGTAGTTGTAAGGTATTTAATTCTAGAGAAGTAGTCATTGTGGCATGACCGGATTCCCTCTAAAACCTCTAAGCCCTTTATAGATTACATGATCCTTATTGCCCACTATGTCAACTCATGGAAGTTTACTTGGAAAGCTACAAATGGATCTTCTCATTCTTCCAACAGTGTATACTTTTAGTTTAAACCATTCCTTTTATGATTCGACGAAAAGTCAGTAAGCATTCTCTTGATTTAGGCCACTATTGCTCGAGGAAACGAGGCTGGACCTTATCGAATCACCGACACAATGGCATTTATGTTTGAATCAAGTCTGATCCCTCGCGTATGCTCTTGGGCTCTGGAGTCTCCATGCATGGATCATGACTACTACCAATGCTGGATAGGATTGAAATCTCATTTCACAAGTGAAGGAACAACTAGAGACATGGATCCACAGAAGGTAAAAACTGATGTTGAAAATGGAAGACAGACTGTGTAG ATGGCCCTGATACTAAAACATACGAGTTCCATTATTCATTTAATTTCCGCCACATTCAAACTTTCTTCTTCACAAGATTCTCTGGTGGCATTTCGTAGTTGTAAGTCATTGTGGCATGACCGGATTCCCTCTAAAACCTCTAAGCCCTTTATAGATTACATGATCCTTATTGCCCACTATGTCAACTCATGGAAGTTTACTTGGAAAGCTACAAATGGATCTTCTCATTCTTCCAACAGTGCCACTATTGCTCGAGGAAACGAGGCTGGACCTTATCGAATCACCGACACAATGGCATTTATGTTTGAATCAAGTCTGATCCCTCGCGTATGCTCTTGGGCTCTGGAGTCTCCATGCATGGATCATGACTACTACCAATGCTGGATAGGATTGAAATCTCATTTCACAAGTGAAGGAACAACTAGAGACATGGATCCACAGAAGGTAAAAACTGATGTTGAAAATGGAAGACAGACTGTGTAG ATGGCCCTGATACTAAAACATACGAGTTCCATTATTCATTTAATTTCCGCCACATTCAAACTTTCTTCTTCACAAGATTCTCTGGTGGCATTTCGTAGTTGTAAGTCATTGTGGCATGACCGGATTCCCTCTAAAACCTCTAAGCCCTTTATAGATTACATGATCCTTATTGCCCACTATGTCAACTCATGGAAGTTTACTTGGAAAGCTACAAATGGATCTTCTCATTCTTCCAACAGTGCCACTATTGCTCGAGGAAACGAGGCTGGACCTTATCGAATCACCGACACAATGGCATTTATGTTTGAATCAAGTCTGATCCCTCGCGTATGCTCTTGGGCTCTGGAGTCTCCATGCATGGATCATGACTACTACCAATGCTGGATAGGATTGAAATCTCATTTCACAAGTGAAGGAACAACTAGAGACATGGATCCACAGAAGGTAAAAACTGATGTTGAAAATGGAAGACAGACTGTGTAG
BLAST of CmoCh04G006000 vs. Swiss-Prot
Match: HGD_ARATH (Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2) HSP 1 Score: 99.0 bits (245), Expect = 5.0e-20 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
BLAST of CmoCh04G006000 vs. Swiss-Prot
Match: HGD_ORYSJ (Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16 Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1
BLAST of CmoCh04G006000 vs. Swiss-Prot
Match: HGD_CUPPJ (Homogentisate 1,2-dioxygenase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=hmgA PE=3 SV=2) HSP 1 Score: 59.7 bits (143), Expect = 3.4e-08 Identity = 29/65 (44.62%), Postives = 37/65 (56.92%), Query Frame = 1
BLAST of CmoCh04G006000 vs. Swiss-Prot
Match: HGD_MOUSE (Homogentisate 1,2-dioxygenase OS=Mus musculus GN=Hgd PE=1 SV=2) HSP 1 Score: 58.2 bits (139), Expect = 9.9e-08 Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1
BLAST of CmoCh04G006000 vs. Swiss-Prot
Match: HGD_BORBR (Homogentisate 1,2-dioxygenase OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=hmgA PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07 Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 1
BLAST of CmoCh04G006000 vs. TrEMBL
Match: A0A0A0KYZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G088750 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 3.9e-27 Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 1
BLAST of CmoCh04G006000 vs. TrEMBL
Match: A0A067ETR6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011768mg PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 3.4e-23 Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1
BLAST of CmoCh04G006000 vs. TrEMBL
Match: A0A067F4S9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011768mg PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 3.4e-23 Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1
BLAST of CmoCh04G006000 vs. TrEMBL
Match: A0A067ETI5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011768mg PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 3.4e-23 Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1
BLAST of CmoCh04G006000 vs. TrEMBL
Match: A0A068UEB1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021307001 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 7.6e-23 Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 1
BLAST of CmoCh04G006000 vs. TAIR10
Match: AT5G54080.1 (AT5G54080.1 homogentisate 1,2-dioxygenase) HSP 1 Score: 99.0 bits (245), Expect = 2.8e-21 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
BLAST of CmoCh04G006000 vs. NCBI nr
Match: gi|659101616|ref|XP_008451701.1| (PREDICTED: homogentisate 1,2-dioxygenase [Cucumis melo]) HSP 1 Score: 129.8 bits (325), Expect = 4.3e-27 Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 1
BLAST of CmoCh04G006000 vs. NCBI nr
Match: gi|449438877|ref|XP_004137214.1| (PREDICTED: homogentisate 1,2-dioxygenase [Cucumis sativus]) HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27 Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 1
BLAST of CmoCh04G006000 vs. NCBI nr
Match: gi|641839569|gb|KDO58497.1| (hypothetical protein CISIN_1g011768mg [Citrus sinensis]) HSP 1 Score: 116.3 bits (290), Expect = 4.9e-23 Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1
BLAST of CmoCh04G006000 vs. NCBI nr
Match: gi|568884307|ref|XP_006494848.1| (PREDICTED: homogentisate 1,2-dioxygenase [Citrus sinensis]) HSP 1 Score: 116.3 bits (290), Expect = 4.9e-23 Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1
BLAST of CmoCh04G006000 vs. NCBI nr
Match: gi|641839571|gb|KDO58499.1| (hypothetical protein CISIN_1g011768mg [Citrus sinensis]) HSP 1 Score: 116.3 bits (290), Expect = 4.9e-23 Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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