CmoCh04G005590 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G005590
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 2753578 .. 2756228 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAATGCAGCCCCTGGCAGCACTGCAATCCTCTCCACATCTTCCCCTTCTTCCACAACGTCCACACACATTGCCAGATCCTTCACCATATACTCAGCATACCCACCAGGCCTGAAGTCCCTCTCTATCATCCTCCCCCCGAACAACTCCATTGCCATCGACCCTCCTGCCCCGCCCCTCACAGCTTCCACAAACTGCTTCACATCCAACCCCGCCTGCTCAGCGAACACCAGCCCTTCACTCACCCCTATCATGTTTCCCACAAGCGTTATCTGGTTCGCTATCTTGCAGCTCTGCCCACACCCTGCTTCACCCACGTATGTCACTTTCCCCAATGCTTCAAACAGAGGTGATAACCACTTCACTACCTCTGCATCGCCACCCCCAAAAATGGATAGCTTCCCGTCCCTAGCGCCAATGTCGCCTCCTGACACGGGCGCATCCACAGCCCAGCAACCTGCCAAGAATATTAGTAAACAAGCTTGAACTTCTTAGTTCAGGATGTTGGGAGGGAATCCCACATTAGAAATACATCTTGGTTCATACAAAAGACTTTTGAGAAGCCCAAACCAAATCCATCTAAACTTATGCTCAAACTAGACAATATGAGTTGATTTAATCTAGTAATTTAGTGAAAATTAACAAGACCTTTTGCTCGAGCGGCAGCGAAGATCTCGCGGGCAAGAGCGGGGTGGCTGCTGGTGGTGTCAACGATGACCCCACCAGGATTTAGTCCTTGTAGGAGCCCATTCTTCTGTAAGACATTTTGTCGAACATCTGATGGGTTTCCCACCATTGTGAAAACAACGTCGCAAGTCTGAGCTAATTCGGAAGGGGAATTGACGAGGGAAGCGCCTTTGGACTGTAAATCAAGAGCCTTGGAAGGGGAACGAGCGTAGATTGTGAGGGAGTATCCGGCGGCGAGGAGACGAGTGGCCATGGCGGCGCCCATCACACCTATGCCGATCCATCCAACGCGAGTTTTAGAAGGAGAGATGGGGATTGGGTAAGGGGTTTCCATGGTGGATTAAGGATTTATCAAAAGCAATTTACAGATGATCAACAGACACCGCCGTGGATCTTGGTTTATTTAGAGTCTAAGATGATAACTGAGCCAACACGAATATATGCTAAAATACCTTTTAACTTTTCAAATATCATTAATATCCTCCATTTTTTTTTTTTATCTTGTACTAAGCTTAAAAAAAAATATTCTTAAAATTTCAAAATAACATTAAAATTCTTAATCTTTATGAAAAAAAAAAAAAATTACCATCAATGTATGAACACAAACTTATATCCACGTCTCATAAATTATTTTCATTTAGAACAAAAATAAATAAATAAATAAATAAAATCTAAAAGTTAATGGTAAGGTTATTTTAAACTTTTTTTTTTTTTAAGATCTAAATGTATTTTTAAAGTTTTGTTAGAAAAAAGTTGGAATATTTATAAAAGTTACCGGATATTTTGAAATTTCAAAAGTATTAACGATGTTCATTTAAACTAAATGTAAATTTATTAACACATAAAATGTAATCATTAGCATAACCAAACCTATCAATTATCAAAATTCATTTCCACTCCAAGACAAAAAAGAATATATGAATGAACTAAAATCACATAAAAATACTTCAAAATTTAAAATTATTACCTATATTAATAAAGTGTATCTTTATTTTGGATAACTCTATCATAAAAACTCTATTGTTGGTACGTGGGTCAAGTCGTGTTAGTCTATAAGGTCACTATGTGTTGGTCTGTGGGAATTTTCTTCACTCTTAGGTGGATAACGTGGTCGTGTCACAAGAAAAGTAGAAAAATATCGGAACCATCAAATATTAAATTCAAACTCTGAATCCTAATGGAGTATTACCATTTTTTGAACAAAAATGGATTAGGAACTTACTCCAAAACAACTTAAAATATTTTTCTTGTAAAGGATAATTTTAAGAAACAATAGCATATTTTATTTTTTAAAACATAAACTATCAGTACAAGCCAGACAGAGAATTGGCTTCCAATCCCAAGTGCACAAACAAGCAATAAACAAACAAGTTTCTTACAGATTCACTTACTTGCCATTAAGCCTCTGAACAACAGAGATTAGCCCTTGAGTGCCAAACTTTCCATCTCCATTGGCCACCATTGCAGAGAACAATTGCTTGGCCAGTGCAGCCCCTGGCAACACTACAAGCCTCTCCACATCTTCCCCTTCTTCCACAACATCCACGCCCATTCCCAAATCCTTCACCATATACTCAGCAAACCCACCAGGCCTAAAGTCCCTCTCTATCATCCTCTCACCAAACAGCTCCATTGCCATTGACCCTGCAGCCCCACCCCTTAAAGCTTCCACAAACTGCTTCACATCCAACCCCGCCCGCTCAGCGAACACCAGCCCTTCACCCAGCCCCATCAGGTTTCCCCCAATCGCTATCTGGTTCGCTATCTTGCAGCTCTGTCCACACCCTGCTTCACCCACGTATGCCACTTTCCCCAATGCTTCAAACAGAGGTGACAACCACTTCACTACCCCTGCATCACCACCCCCAAAAATGGCCAACTTCCCATCTCTAGCGCCAATGTCGCCCCCTGACACGGGCGCATCCACAGCCCAGCAACCTGCCAAGAATATGAGCAAATAA

mRNA sequence

ATGGCCAATGCAGCCCCTGGCAGCACTGCAATCCTCTCCACATCTTCCCCTTCTTCCACAACGTCCACACACATTGCCAGATCCTTCACCATATACTCAGCATACCCACCAGGCCTGAAGTCCCTCTCTATCATCCTCCCCCCGAACAACTCCATTGCCATCGACCCTCCTGCCCCGCCCCTCACAGCTTCCACAAACTGCTTCACATCCAACCCCGCCTGCTCAGCGAACACCAGCCCTTCACTCACCCCTATCATGTTTCCCACAAGCGTTATCTGGTTCGCTATCTTGCAGCTCTGCCCACACCCTGCTTCACCCACGTATGTCACTTTCCCCAATGCTTCAAACAGAGGTGATAACCACTTCACTACCTCTGCATCGCCACCCCCAAAAATGGATAGCTTCCCGTCCCTAGCGCCAATGTCGCCTCCTGACACGGGCGCATCCACAGCCCAGCAACCTGCCAAGAATATTAATTGTGAGGGAGTATCCGGCGGCGAGGAGACGAGTGGCCATGGCGGCGCCCATCACACCTATGCCGATCCATCCAACGCGAAGAACAATTGCTTGGCCAGTGCAGCCCCTGGCAACACTACAAGCCTCTCCACATCTTCCCCTTCTTCCACAACATCCACGCCCATTCCCAAATCCTTCACCATATACTCAGCAAACCCACCAGGCCTAAAGTCCCTCTCTATCATCCTCTCACCAAACAGCTCCATTGCCATTGACCCTGCAGCCCCACCCCTTAAAGCTTCCACAAACTGCTTCACATCCAACCCCGCCCGCTCAGCGAACACCAGCCCTTCACCCAGCCCCATCAGGTTTCCCCCAATCGCTATCTGGTTCGCTATCTTGCAGCTCTGTCCACACCCTGCTTCACCCACGTATGCCACTTTCCCCAATGCTTCAAACAGAGGTGACAACCACTTCACTACCCCTGCATCACCACCCCCAAAAATGGCCAACTTCCCATCTCTAGCGCCAATGTCGCCCCCTGACACGGGCGCATCCACAGCCCAGCAACCTGCCAAGAATATGAGCAAATAA

Coding sequence (CDS)

ATGGCCAATGCAGCCCCTGGCAGCACTGCAATCCTCTCCACATCTTCCCCTTCTTCCACAACGTCCACACACATTGCCAGATCCTTCACCATATACTCAGCATACCCACCAGGCCTGAAGTCCCTCTCTATCATCCTCCCCCCGAACAACTCCATTGCCATCGACCCTCCTGCCCCGCCCCTCACAGCTTCCACAAACTGCTTCACATCCAACCCCGCCTGCTCAGCGAACACCAGCCCTTCACTCACCCCTATCATGTTTCCCACAAGCGTTATCTGGTTCGCTATCTTGCAGCTCTGCCCACACCCTGCTTCACCCACGTATGTCACTTTCCCCAATGCTTCAAACAGAGGTGATAACCACTTCACTACCTCTGCATCGCCACCCCCAAAAATGGATAGCTTCCCGTCCCTAGCGCCAATGTCGCCTCCTGACACGGGCGCATCCACAGCCCAGCAACCTGCCAAGAATATTAATTGTGAGGGAGTATCCGGCGGCGAGGAGACGAGTGGCCATGGCGGCGCCCATCACACCTATGCCGATCCATCCAACGCGAAGAACAATTGCTTGGCCAGTGCAGCCCCTGGCAACACTACAAGCCTCTCCACATCTTCCCCTTCTTCCACAACATCCACGCCCATTCCCAAATCCTTCACCATATACTCAGCAAACCCACCAGGCCTAAAGTCCCTCTCTATCATCCTCTCACCAAACAGCTCCATTGCCATTGACCCTGCAGCCCCACCCCTTAAAGCTTCCACAAACTGCTTCACATCCAACCCCGCCCGCTCAGCGAACACCAGCCCTTCACCCAGCCCCATCAGGTTTCCCCCAATCGCTATCTGGTTCGCTATCTTGCAGCTCTGTCCACACCCTGCTTCACCCACGTATGCCACTTTCCCCAATGCTTCAAACAGAGGTGACAACCACTTCACTACCCCTGCATCACCACCCCCAAAAATGGCCAACTTCCCATCTCTAGCGCCAATGTCGCCCCCTGACACGGGCGCATCCACAGCCCAGCAACCTGCCAAGAATATGAGCAAATAA
BLAST of CmoCh04G005590 vs. TrEMBL
Match: A0A0A9GSN2_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.0e-24
Identity = 78/156 (50.00%), Postives = 92/156 (58.97%), Query Frame = 1

Query: 185 AKNNCLASAAPGNTTSLSTSSPSSTTSTPIPKSFTIYSANPPGLKSLSIILSPNSSIAID 244
           A+N C  SAAPG+T +   SSP S TS+ +P+S T+Y   PP   S     SP  SI  D
Sbjct: 25  AENICRNSAAPGSTFA---SSPPSPTSSAMPRSLTMYRTGPPDANSRRSTRSPKMSITRD 84

Query: 245 PAAPPLKASTNCFTSNPARSANTSPSPSPIRFPPIAIWFAILQLCPHPASPTYATFPNAS 304
           PAAP   AS N   S+PA  AN + SP P   P  AIW AIL LCP P  P +  FP  +
Sbjct: 85  PAAPLDTASRNSGASSPAAVANATDSPRPTTAPATAIWLAILLLCPLPGGPMWVGFPRWA 144

Query: 305 NRGDNHFTTPASPPPKMANFPSLAPMSPPDTGASTA 341
             G +  TT +SPP KMA  PS AP SPP+TGASTA
Sbjct: 145 KSGASQVTTASSPPAKMARVPSRAPTSPPETGASTA 177

BLAST of CmoCh04G005590 vs. TrEMBL
Match: A0A0A9EWT7_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.3e-22
Identity = 75/156 (48.08%), Postives = 90/156 (57.69%), Query Frame = 1

Query: 185 AKNNCLASAAPGNTTSLSTSSPSSTTSTPIPKSFTIYSANPPGLKSLSIILSPNSSIAID 244
           A+N C  SAAPG+T +   SSP S TS+  P+S T+Y   PP   S     SP  SI  +
Sbjct: 30  AENICRNSAAPGSTLA---SSPPSPTSSATPRSLTMYRTGPPNANSRRSTRSPKMSITRE 89

Query: 245 PAAPPLKASTNCFTSNPARSANTSPSPSPIRFPPIAIWFAILQLCPHPASPTYATFPNAS 304
           PAAP   A      S+PA +AN + SP P   P  AIW AIL LCP P  P +  FP  +
Sbjct: 90  PAAPLDTA------SSPAAAANATDSPRPTTAPATAIWLAILLLCPLPGGPMWVGFPRCA 149

Query: 305 NRGDNHFTTPASPPPKMANFPSLAPMSPPDTGASTA 341
             G +  TT +SPP KMA  PS AP SPP+TGASTA
Sbjct: 150 KSGASQATTASSPPAKMARVPSRAPTSPPETGASTA 176

BLAST of CmoCh04G005590 vs. TrEMBL
Match: A0A0A9IU47_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 62/127 (48.82%), Postives = 73/127 (57.48%), Query Frame = 1

Query: 214 IPKSFTIYSANPPGLKSLSIILSPNSSIAIDPAAPPLKASTNCFTSNPARSANTSPSPSP 273
           +P+S T+Y   PP   S     SP  SI  +PAAP   AS N   S+PA  AN + SP P
Sbjct: 1   MPRSLTMYRTGPPDANSRRSTRSPKMSITREPAAPFDTASRNSGASSPAAVANATDSPRP 60

Query: 274 IRFPPIAIWFAILQLCPHPASPTYATFPNASNRGDNHFTTPASPPPKMANFPSLAPMSPP 333
              P  AIW AIL LCP P  P +  FP  +  G +  TT +SPP KMA  PS AP SPP
Sbjct: 61  TTAPATAIWLAILLLCPLPGGPMWVGFPRWAKSGASQATTASSPPAKMARVPSRAPTSPP 120

Query: 334 DTGASTA 341
           +TGASTA
Sbjct: 121 ETGASTA 127

BLAST of CmoCh04G005590 vs. TrEMBL
Match: C7IY07_ORYSJ (Os01g0742350 protein OS=Oryza sativa subsp. japonica GN=Os01g0742350 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 56/113 (49.56%), Postives = 64/113 (56.64%), Query Frame = 1

Query: 230 SLSIILSPNSSIAIDPAAPPLKASTNCFTSNPARSANTSPSPSPIRFPPIAIWFAILQLC 289
           S S I  P  S  +DPAAP   AS++  TS+PA  A T PS SP     IAIW      C
Sbjct: 2   SRSSIRFPYRSSDLDPAAPVEMASSHFATSSPALCAYTMPSTSPTMVDAIAIWLPSFARC 61

Query: 290 PHPASPTYATFPNASNRGDNHFTTPASPPPKMANFPSLAPMSPPDTGASTAQQ 343
           P P  P Y+ FP + NRG    TT ASPP KM +    AP SPP+TGASTA Q
Sbjct: 62  PAPGPPMYSAFPISLNRGARRATTAASPPAKMESVALRAPRSPPETGASTAAQ 114

BLAST of CmoCh04G005590 vs. TrEMBL
Match: A0A0A9JAG2_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.3e-14
Identity = 55/116 (47.41%), Postives = 64/116 (55.17%), Query Frame = 1

Query: 230 SLSIILSPNSSIAIDPAAPPLKASTNCFTSNPARSANTSPSPSPIRFPPIAIWFAILQLC 289
           S S I  P  S  +DPAAP   AS++  TS+PA  A T PS SP     +AIW      C
Sbjct: 2   SRSRIRFPYRSSDLDPAAPVDMASSHLATSSPALCAYTMPSTSPTMVDAMAIWLPSFARC 61

Query: 290 PHPASPTYATFPNASNRGDNHFTTPASPPPKMANFPSLAPMSPPDTGASTAQQPAK 346
           P P  P Y+ FP +   G    TT ASPP KM      AP SPP+TGASTA QPA+
Sbjct: 62  PAPGPPMYSAFPMSLKSGARRVTTAASPPEKMERVALRAPRSPPETGASTAAQPAE 117

BLAST of CmoCh04G005590 vs. NCBI nr
Match: gi|255673675|dbj|BAH91293.1| (Os01g0742350 [Oryza sativa Japonica Group])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 56/113 (49.56%), Postives = 64/113 (56.64%), Query Frame = 1

Query: 230 SLSIILSPNSSIAIDPAAPPLKASTNCFTSNPARSANTSPSPSPIRFPPIAIWFAILQLC 289
           S S I  P  S  +DPAAP   AS++  TS+PA  A T PS SP     IAIW      C
Sbjct: 2   SRSSIRFPYRSSDLDPAAPVEMASSHFATSSPALCAYTMPSTSPTMVDAIAIWLPSFARC 61

Query: 290 PHPASPTYATFPNASNRGDNHFTTPASPPPKMANFPSLAPMSPPDTGASTAQQ 343
           P P  P Y+ FP + NRG    TT ASPP KM +    AP SPP+TGASTA Q
Sbjct: 62  PAPGPPMYSAFPISLNRGARRATTAASPPAKMESVALRAPRSPPETGASTAAQ 114

BLAST of CmoCh04G005590 vs. NCBI nr
Match: gi|983579322|ref|WP_060729488.1| (hypothetical protein [Streptomyces albus])

HSP 1 Score: 63.9 bits (154), Expect = 6.3e-07
Identity = 44/119 (36.97%), Postives = 60/119 (50.42%), Query Frame = 1

Query: 37  PGLKSLSIILPPNNSIAIDPPAPPLTASTNCFTSNPACSANTSPSLTPIMFPTSVIWFAI 96
           PG KS S  L    +  ++P +PP   S+    S P  S  T+ S        ++ W A 
Sbjct: 4   PGAKSRSRKLVFLRASTVEPASPPPRTSSAAVRSTPDFSRKTTASAQAWRLTATMSWLAA 63

Query: 97  LQLCPHPASPTY-VTFPNASNRGDNHFTTSASPPPKMDSFPSLAPMSPPDTGASTAQQP 155
           L +CP P  P   +  P AS RG     +S +PP  MDS  S+AP SPP+TGAS+ + P
Sbjct: 64  LTVCPAPCGPQRTMVVPRASKRGRAASKSSWAPPTMMDSTASMAPASPPETGASSTRMP 122

BLAST of CmoCh04G005590 vs. NCBI nr
Match: gi|727242671|ref|WP_033702623.1| (hypothetical protein [Pseudomonas sp. WCS358])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 45/128 (35.16%), Postives = 58/128 (45.31%), Query Frame = 1

Query: 38  GLKSLSIILPPNNSIAIDPPAPPLTASTNCFTSNPACSANTSPSLTPIMFPTSVIWFAIL 97
           G K LS I         +   PP  AS     S P CSAN + S        ++IW   L
Sbjct: 3   GSKRLSAICGARICSGFESAKPPAKASAISVASTPDCSANATTSAITKALQATIIWLQAL 62

Query: 98  QLCPHPASPTYVT-FPNASNRGDNHFTTSASPPPKMDSFPSLAPMSPPDTGASTAQQPAK 157
              P P +P  VT +P A + G     ++ASPP  M   P+ AP  PPDTGAS+   P K
Sbjct: 63  VTWPAPTAPMCVTRWPRACSTGSARCKSAASPPTMMAKVPASAPGVPPDTGASSQAMPDK 122

Query: 158 NINCEGVS 165
             +   +S
Sbjct: 123 AASAAAIS 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A9GSN2_ARUDO3.0e-2450.00Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9EWT7_ARUDO6.3e-2248.08Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9IU47_ARUDO2.2e-1948.82Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
C7IY07_ORYSJ1.7e-1449.56Os01g0742350 protein OS=Oryza sativa subsp. japonica GN=Os01g0742350 PE=4 SV=1[more]
A0A0A9JAG2_ARUDO6.3e-1447.41Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|255673675|dbj|BAH91293.1|2.4e-1449.56Os01g0742350 [Oryza sativa Japonica Group][more]
gi|983579322|ref|WP_060729488.1|6.3e-0736.97hypothetical protein [Streptomyces albus][more]
gi|727242671|ref|WP_033702623.1|1.1e-0635.16hypothetical protein [Pseudomonas sp. WCS358][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G005590.1CmoCh04G005590.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None