CmoCh04G005470 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	WRKY family transcription factor
Location	Cmo_Chr04 : 2702157 .. 2702957 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTGATCTATCACTCAAAATTGATCATCACAAACAAGAACCGAACCAAGAACATCAAGAACACGACGAACACGAAGAACACGAAGAACACGAAGATTATCGAGTTCGAGAAAAAAAGGGAGTTGATGACACTGAAATTCATGTTGCTGCCTCTACTTTGAAAGTATTTTTGCCACAACACAACGTTAATGTAGGAGAGGTATCATTTAAAACCCTTTTTTCTATTCCTTTTTCTCAATTCAATTCATGAACGAGAGAATTAAATCGATGGGTCGGTAGAATTCAAACCTTTGACCTATTCATCGAGAATATATACTTATATCAATTGAATTAGCTCACGTTACTTTGATTCTATCAATTGCGTTATATTCATGGATTTGAAGAAAAATTCGTGTATATCGTTTTTTCTTGAATGGGTTCGTTTTTACGTTTGATATAAACGATAGATGATCTCATCATCGTGTATACATACACGGCGTGTTCGGTGTAGATCTCGGAGTTGCAAATGGAGATGAATCGTATGAAGGAAGAGAACAAGATGTTGAGAAAAGAAGTGGAACAAACCATGAAAGATTACTATGATCTTGAGATGAAAATTGCTATCATTCAACAAAACAATCTCCAAAAAAAGGTACCCAAAACCCCAATTCTCGTGTTTTTCAATATCAATATGAGTTTGATACTCGTAACGATTCTATCCGTGAGAATTCGAGCTATGATTTGTTTCTCGGTTGAATCCATACACAGGACTCTCACAACTTTCTACCGAGCCACGAAAATGAAAACAAGAGGATAG

mRNA sequence

ATGGAGATTGATCTATCACTCAAAATTGATCATCACAAACAAGAACCGAACCAAGAACATCAAGAACACGACGAACACGAAGAACACGAAGAACACGAAGATTATCGAGTTCGAGAAAAAAAGGGAGTTGATGACACTGAAATTCATGTTGCTGCCTCTACTTTGAAAGTATTTTTGCCACAACACAACGTTAATGTAGGAGAGATCTCGGAGTTGCAAATGGAGATGAATCGTATGAAGGAAGAGAACAAGATGTTGAGAAAAGAAGTGGAACAAACCATGAAAGATTACTATGATCTTGAGATGAAAATTGCTATCATTCAACAAAACAATCTCCAAAAAAAGGTACCCAAAACCCCAATTCTCGTGTTTTTCAATATCAATATGAGTTTGATACTCGTAACGATTCTATCCGTGAGAATTCGAGCTATGATTTGTTTCTCGGTTGAATCCATACACAGGACTCTCACAACTTTCTACCGAGCCACGAAAATGAAAACAAGAGGATAG

Coding sequence (CDS)

ATGGAGATTGATCTATCACTCAAAATTGATCATCACAAACAAGAACCGAACCAAGAACATCAAGAACACGACGAACACGAAGAACACGAAGAACACGAAGATTATCGAGTTCGAGAAAAAAAGGGAGTTGATGACACTGAAATTCATGTTGCTGCCTCTACTTTGAAAGTATTTTTGCCACAACACAACGTTAATGTAGGAGAGATCTCGGAGTTGCAAATGGAGATGAATCGTATGAAGGAAGAGAACAAGATGTTGAGAAAAGAAGTGGAACAAACCATGAAAGATTACTATGATCTTGAGATGAAAATTGCTATCATTCAACAAAACAATCTCCAAAAAAAGGTACCCAAAACCCCAATTCTCGTGTTTTTCAATATCAATATGAGTTTGATACTCGTAACGATTCTATCCGTGAGAATTCGAGCTATGATTTGTTTCTCGGTTGAATCCATACACAGGACTCTCACAACTTTCTACCGAGCCACGAAAATGAAAACAAGAGGATAG

Homology

[Close]

BLAST of CmoCh04G005470 vs. TrEMBL
Match: A0A0A0LC02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G212490 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-22
Identity = 74/124 (59.68%), Postives = 84/124 (67.74%), Query Frame = 1


Query: 1   MEIDLSLKIDHHKQE----------PNQEHQEHDEHEEHEEHEDYRVREKKGVDDTEIHV 60
           MEIDLSLKIDHHK+E           N + Q  D+H+  EE E     E++   D + HV
Sbjct: 1   MEIDLSLKIDHHKEEHHHHHLIKHQKNDQQQRQDDHDREEEGEGEGEEEEEEEIDIDHHV 60

Query: 61  AAST---LKVFLPQHNVNVGEISELQMEMNRMKEENKMLRKEVEQTMKDYYDLEMKIAII 112
             ST   LKVFLP +N NVGEISELQMEM+R+KEENK LRK VEQTMKDYYDLEMKI   
Sbjct: 61  VPSTTSGLKVFLPHNNTNVGEISELQMEMDRIKEENKALRKAVEQTMKDYYDLEMKIGFF 120

[Close]

BLAST of CmoCh04G005470 vs. TrEMBL
Match: A0A061DXG8_THECC (WRKY DNA-binding protein 9, putative isoform 1 OS=Theobroma cacao GN=TCM_006426 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 69/140 (49.29%), Postives = 89/140 (63.57%), Query Frame = 1


Query: 1   MEIDLSLKIDHHKQEPNQEHQEHDEHEEHEE--HEDYRVREKKGVDDTEIHVA-ASTLKV 60
           MEIDLSLKID  ++E  +E +E +E EE E+   E     E+    D E+  A A+T +V
Sbjct: 8   MEIDLSLKIDAKEEEEEEEEEEEEEVEEEEKDVEEAKETMEEDDNQDREVMTAIAATGEV 67

Query: 61  -------FLPQHNVNVGEISELQMEMNRMKEENKMLRKEVEQTMKDYYDLEMKIAIIQQN 120
                  F  Q N+   E+S LQMEM+RMKEENK+LRK VE+TM+DYYDL+MK A IQQN
Sbjct: 68  EVGAPLEFSLQENMKTEELSVLQMEMSRMKEENKVLRKVVEKTMQDYYDLQMKFAAIQQN 127

Query: 121 NLQKKVPKTPILVFFNINMS 131
           N QKK P+  + +  N N S
Sbjct: 128 N-QKKDPQIFLSLSGNENSS 146

[Close]

BLAST of CmoCh04G005470 vs. TrEMBL
Match: S5CKA9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=WRKY34 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-13
Identity = 67/136 (49.26%), Postives = 83/136 (61.03%), Query Frame = 1


Query: 1   MEIDLSLKIDHHKQEPNQEHQEHDEHEEHEEHEDYRVRE------KKGVDDTEIH----- 60
           M+IDLSLKID   +E  +E +E +E EE E  +   V+E      +K  D  EI+     
Sbjct: 1   MDIDLSLKIDTEDKEQEREEEEEEEEEEEEAKKAKEVQEMQENSREKRPDVQEINDNEAT 60

Query: 61  --------VAASTLKVFLPQHNVNVGEISELQMEMNRMKEENKMLRKEVEQTMKDYYDLE 118
                   V  S+L++ L Q N    E+S LQMEMNRMKEENK+LRK VEQTMKDYYDL+
Sbjct: 61  PTITGGEVVDDSSLELSL-QENTKTEELSALQMEMNRMKEENKVLRKVVEQTMKDYYDLQ 120

[Close]

BLAST of CmoCh04G005470 vs. TrEMBL
Match: W9SBD9_9ROSA (Putative WRKY transcription factor 9 OS=Morus notabilis GN=L484_024154 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.5e-13
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1


Query: 1   MEIDLSLKIDHHKQEPNQEHQEHDEHEEHEEHEDYRVREKKGVDDT-------------- 60
           MEIDLSLKIDH K+E + +H   ++  E EE ED    EK+  +++              
Sbjct: 2   MEIDLSLKIDHAKEEEDDDHDHEEDDNEVEEKEDKDEVEKQKDEESKEEQERIVHGQNNN 61

Query: 61  --------EIHVAASTLKVFLPQHNVNVGEISELQMEMNRMKEENKMLRKEVEQTMKDYY 115
                   E+   AS ++    Q N+   E++ LQMEMNRMKEENK+LRK VEQTMKD+Y
Sbjct: 62  EQAEATIGEVEDEASVVESL--QENMKSDELAVLQMEMNRMKEENKVLRKVVEQTMKDHY 121

[Close]

BLAST of CmoCh04G005470 vs. TrEMBL
Match: A0A0B2QN87_GLYSO (Putative WRKY transcription factor 9 OS=Glycine soja GN=glysoja_037424 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.3e-12
Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 1


Query: 1   MEIDLSLKID---HHKQEPNQEHQEHDEHEEHEEHEDYRVREKKGVDDTEIHVAASTLKV 60
           MEIDLSLKID    HK+E ++  +E DE +E  + +D    E       EI   AS ++ 
Sbjct: 11  MEIDLSLKIDTDDEHKEEEDERVKE-DEEQEMAQIQDNNKEEIPEATAGEIEDDASVIET 70

Query: 61  FLPQHNVNVGEISELQMEMNRMKEENKMLRKEVEQTMKDYYDLEMKIAIIQQNNLQK 115
            L Q N    E+S LQMEM  MKEENK+LRK VEQTMKDYYDL+MK + IQ+NN +K
Sbjct: 71  SL-QDNTKTKELSVLQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSAIQENNKRK 125

[Close]

BLAST of CmoCh04G005470 vs. NCBI nr
Match: gi|659112178|ref|XP_008456102.1| (PREDICTED: probable WRKY transcription factor 9 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-23
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 1


Query: 1   MEIDLSLKIDHHKQEPN------------QEHQEHDEHEEHEEHEDYRVREKKGVDDTEI 60
           MEIDLSLKIDHHK+E +            Q+HQ+  +H++ EE ED    E+  +D   +
Sbjct: 1   MEIDLSLKIDHHKEEHHHHHLIKHQKTDQQQHQDDHDHDKEEEEEDEEEEEEIDIDHHVV 60

Query: 61  HVAASTLKVFLPQHNVNVGEISELQMEMNRMKEENKMLRKEVEQTMKDYYDLEMKIAIIQ 112
               S LKV LP +N+NVGEISELQMEM+R+KEENK LRK VEQTMKDYYDLEMKI   Q
Sbjct: 61  PSTTSGLKVLLPHNNINVGEISELQMEMDRIKEENKALRKAVEQTMKDYYDLEMKIGFFQ 120

[Close]

BLAST of CmoCh04G005470 vs. NCBI nr
Match: gi|778674482|ref|XP_011650228.1| (PREDICTED: uncharacterized protein LOC101215114 isoform X1 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 74/124 (59.68%), Postives = 84/124 (67.74%), Query Frame = 1


Query: 1   MEIDLSLKIDHHKQE----------PNQEHQEHDEHEEHEEHEDYRVREKKGVDDTEIHV 60
           MEIDLSLKIDHHK+E           N + Q  D+H+  EE E     E++   D + HV
Sbjct: 1   MEIDLSLKIDHHKEEHHHHHLIKHQKNDQQQRQDDHDREEEGEGEGEEEEEEEIDIDHHV 60

Query: 61  AAST---LKVFLPQHNVNVGEISELQMEMNRMKEENKMLRKEVEQTMKDYYDLEMKIAII 112
             ST   LKVFLP +N NVGEISELQMEM+R+KEENK LRK VEQTMKDYYDLEMKI   
Sbjct: 61  VPSTTSGLKVFLPHNNTNVGEISELQMEMDRIKEENKALRKAVEQTMKDYYDLEMKIGFF 120

[Close]

BLAST of CmoCh04G005470 vs. NCBI nr
Match: gi|590683325|ref|XP_007041569.1| (WRKY DNA-binding protein 9, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 69/140 (49.29%), Postives = 89/140 (63.57%), Query Frame = 1


Query: 1   MEIDLSLKIDHHKQEPNQEHQEHDEHEEHEE--HEDYRVREKKGVDDTEIHVA-ASTLKV 60
           MEIDLSLKID  ++E  +E +E +E EE E+   E     E+    D E+  A A+T +V
Sbjct: 8   MEIDLSLKIDAKEEEEEEEEEEEEEVEEEEKDVEEAKETMEEDDNQDREVMTAIAATGEV 67

Query: 61  -------FLPQHNVNVGEISELQMEMNRMKEENKMLRKEVEQTMKDYYDLEMKIAIIQQN 120
                  F  Q N+   E+S LQMEM+RMKEENK+LRK VE+TM+DYYDL+MK A IQQN
Sbjct: 68  EVGAPLEFSLQENMKTEELSVLQMEMSRMKEENKVLRKVVEKTMQDYYDLQMKFAAIQQN 127

Query: 121 NLQKKVPKTPILVFFNINMS 131
           N QKK P+  + +  N N S
Sbjct: 128 N-QKKDPQIFLSLSGNENSS 146

[Close]

BLAST of CmoCh04G005470 vs. NCBI nr
Match: gi|802557761|ref|XP_012065723.1| (PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas])

HSP 1 Score: 82.8 bits (203), Expect = 6.3e-13
Identity = 67/136 (49.26%), Postives = 83/136 (61.03%), Query Frame = 1


Query: 1   MEIDLSLKIDHHKQEPNQEHQEHDEHEEHEEHEDYRVRE------KKGVDDTEIH----- 60
           M+IDLSLKID   +E  +E +E +E EE E  +   V+E      +K  D  EI+     
Sbjct: 9   MDIDLSLKIDTEDKEQEREEEEEEEEEEEEAKKAKEVQEMQENSREKRPDVQEINDNEAT 68

Query: 61  --------VAASTLKVFLPQHNVNVGEISELQMEMNRMKEENKMLRKEVEQTMKDYYDLE 118
                   V  S+L++ L Q N    E+S LQMEMNRMKEENK+LRK VEQTMKDYYDL+
Sbjct: 69  PTITGGEVVDDSSLELSL-QENTKTEELSALQMEMNRMKEENKVLRKVVEQTMKDYYDLQ 128

[Close]

BLAST of CmoCh04G005470 vs. NCBI nr
Match: gi|522191312|gb|AGQ04223.1| (WRKY transcription factor 34 [Jatropha curcas])

HSP 1 Score: 82.8 bits (203), Expect = 6.3e-13
Identity = 67/136 (49.26%), Postives = 83/136 (61.03%), Query Frame = 1


Query: 1   MEIDLSLKIDHHKQEPNQEHQEHDEHEEHEEHEDYRVRE------KKGVDDTEIH----- 60
           M+IDLSLKID   +E  +E +E +E EE E  +   V+E      +K  D  EI+     
Sbjct: 1   MDIDLSLKIDTEDKEQEREEEEEEEEEEEEAKKAKEVQEMQENSREKRPDVQEINDNEAT 60

Query: 61  --------VAASTLKVFLPQHNVNVGEISELQMEMNRMKEENKMLRKEVEQTMKDYYDLE 118
                   V  S+L++ L Q N    E+S LQMEMNRMKEENK+LRK VEQTMKDYYDL+
Sbjct: 61  PTITGGEVVDDSSLELSL-QENTKTEELSALQMEMNRMKEENKVLRKVVEQTMKDYYDLQ 120

The following BLAST results are available for this feature:

BLAST of CmoCh04G005470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G005470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC02_CUCSA	1.0e-22	59.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G212490 PE=4 SV=1	[more]
A0A061DXG8_THECC	1.2e-13	49.29	WRKY DNA-binding protein 9, putative isoform 1 OS=Theobroma cacao GN=TCM_006426 ...	[more]
S5CKA9_JATCU	4.4e-13	49.26	Uncharacterized protein OS=Jatropha curcas GN=WRKY34 PE=4 SV=1	[more]
W9SBD9_9ROSA	7.5e-13	44.12	Putative WRKY transcription factor 9 OS=Morus notabilis GN=L484_024154 PE=4 SV=1	[more]
A0A0B2QN87_GLYSO	8.3e-12	51.28	Putative WRKY transcription factor 9 OS=Glycine soja GN=glysoja_037424 PE=4 SV=1	[more]

BLAST of CmoCh04G005470 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G005470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112178\|ref\|XP_008456102.1\|	3.9e-23	57.72	PREDICTED: probable WRKY transcription factor 9 [Cucumis melo]	[more]
gi\|778674482\|ref\|XP_011650228.1\|	1.5e-22	59.68	PREDICTED: uncharacterized protein LOC101215114 isoform X1 [Cucumis sativus]	[more]
gi\|590683325\|ref\|XP_007041569.1\|	1.7e-13	49.29	WRKY DNA-binding protein 9, putative isoform 1 [Theobroma cacao]	[more]
gi\|802557761\|ref\|XP_012065723.1\|	6.3e-13	49.26	PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]	[more]
gi\|522191312\|gb\|AGQ04223.1\|	6.3e-13	49.26	WRKY transcription factor 34 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G005470.1	CmoCh04G005470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 69..96 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G005470	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G005470	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G005470	Wild cucumber (PI 183967)	cmocpiB698
CmoCh04G005470	Cucumber (Chinese Long) v2	cmocuB687
CmoCh04G005470	Melon (DHL92) v3.5.1	cmomeB683
CmoCh04G005470	Melon (DHL92) v3.5.1	cmomeB682
CmoCh04G005470	Watermelon (Charleston Gray)	cmowcgB658
CmoCh04G005470	Watermelon (Charleston Gray)	cmowcgB660
CmoCh04G005470	Watermelon (97103) v1	cmowmB697
CmoCh04G005470	Watermelon (97103) v1	cmowmB699
CmoCh04G005470	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G005470	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G005470	Bottle gourd (USVL1VR-Ls)	cmolsiB683
CmoCh04G005470	Cucumber (Gy14) v2	cgybcmoB386
CmoCh04G005470	Melon (DHL92) v3.6.1	cmomedB774
CmoCh04G005470	Silver-seed gourd	carcmoB0514
CmoCh04G005470	Silver-seed gourd	carcmoB0899
CmoCh04G005470	Cucumber (Chinese Long) v3	cmocucB0814
CmoCh04G005470	Watermelon (97103) v2	cmowmbB735
CmoCh04G005470	Wax gourd	cmowgoB0849
CmoCh04G005470	Cucurbita moschata (Rifu)	cmocmoB286