CmoCh04G004290 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G004290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 2129384 .. 2130554 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGAATCCGTAACCTCTCCAGATCTTCACCTTTCATGGCTACACAAACAATTCCTGTTCCATGTTTTACAATGAAAGCCATAGCCTCAGGAGTAGCAGCTTGTGCTGCCATTATCAAATCTCCCTCGTTTTCTCTATCTTCATCATCAACAACAAGCACCATCTGCAACATCACTGTTCTTGTTACTAAGATGAAAAGGAAAAAAAAAAACAAGAAAAAGAAATGCTCCATGTCATATTGGACAACCTTTCCCTGTCGAATATCTTCGACTGCATCAGCAACAGCAGCGAAACCTGCGGTGGGACGATCAAAATCATATTCATCTTCACCAACGGGAAAACTATTTCGAGTAGAAGCTGAATCTAGCTGATTTCCAAGGACGATATCGTTCGAAACAACAGCATTGCCATTGGAAGAAGACAGAACTCCTCCTTCACCAGATATCAACGTAGCTCTTGGTTGGACTGAACCCCTGGTGCCTAAAAACAGTTTACTAGCTTTACAGCTCGAGGTTAACTCCGAAACGAGGCTAGTTGCAACGTACGGTTTAACATGATTGATTCCACCAAAAGACTGCAAGTCTTTGAATCTTCTACATCATACAAAAATCAGGCAATTTGTTTAGAGAAAATTCATAGAAAACATCTAACATACTTCATTTACTTAAAGAATTCCTACCGGAAACACATTCTAATCAATGTTCTTAAGCTTCAATAGTAAAACTTAATAGCTAGATTTAGTTTTTTTGTGGAATGTAGAGCAAAAATTCGTGCCAAAAGCCTGTTAAACTCAAATAACAATAGCTAATCCAAATGGGATCAAGAATTTAATGCATAACATGATGTTATTTCTTCATTTCTCTTAAATCAATTGGTAGTAAAATGCGAGATGTTCATATGACGATGCGAAAATTTCGACTGTTCTAACAGAGAAGAATACAGAGGCCTCAGATGATCATACGAGACTTCGAAGTAAGTAAGATCCAAACAAATAAACAGTGAAATTTCATCATCAAACTTGATCTCAACCGATTTGGATATCAGAATCATGAAAATGAAGCAAAATCGAGGTATAAAACGCAGCAATCCATCAAAACGAGAAACCCAGAAACGAAAATCGCATATGATTCGAACAGATTACTCTCAAACAAGACGATAATTGAATGA

mRNA sequence

ATGAGCGGAATCCGTAACCTCTCCAGATCTTCACCTTTCATGGCTACACAAACAATTCCTGTTCCATGTTTTACAATGAAAGCCATAGCCTCAGGAGTAGCAGCTTGTGCTGCCATTATCAAATCTCCCTCGTTTTCTCTATCTTCATCATCAACAACAAGCACCATCTGCAACATCACTGTTCTTGTTACTAAGATGAAAAGGAAAAAAAAAAACAAGAAAAAGAAATGCTCCATGTCATATTGGACAACCTTTCCCTGTCGAATATCTTCGACTGCATCAGCAACAGCAGCGAAACCTGCGAGAAGAATACAGAGGCCTCAGATGATCATACGAGACTTCGAAAATCATGAAAATGAAGCAAAATCGAGGTATAAAACGCAGCAATCCATCAAAACGAGAAACCCAGAAACGAAAATCGCATATGATTCGAACAGATTACTCTCAAACAAGACGATAATTGAATGA

Coding sequence (CDS)

ATGAGCGGAATCCGTAACCTCTCCAGATCTTCACCTTTCATGGCTACACAAACAATTCCTGTTCCATGTTTTACAATGAAAGCCATAGCCTCAGGAGTAGCAGCTTGTGCTGCCATTATCAAATCTCCCTCGTTTTCTCTATCTTCATCATCAACAACAAGCACCATCTGCAACATCACTGTTCTTGTTACTAAGATGAAAAGGAAAAAAAAAAACAAGAAAAAGAAATGCTCCATGTCATATTGGACAACCTTTCCCTGTCGAATATCTTCGACTGCATCAGCAACAGCAGCGAAACCTGCGAGAAGAATACAGAGGCCTCAGATGATCATACGAGACTTCGAAAATCATGAAAATGAAGCAAAATCGAGGTATAAAACGCAGCAATCCATCAAAACGAGAAACCCAGAAACGAAAATCGCATATGATTCGAACAGATTACTCTCAAACAAGACGATAATTGAATGA
Homology
[Close]
BLAST of CmoCh04G004290 vs. TrEMBL
Match: A0A0A9D1E5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-10
Identity = 55/131 (41.98%), Postives = 68/131 (51.91%), Query Frame = 1 

Query: 1   MSGIRNLSRSSPFMATQTIPVPCFTMKAIASGVAACAAIIKSPSFSLSSSSTTSTICNIT 60
           + G  NLSRSS FM T TIPVPC T KAIASGV   AA ++SPSFSL SSSTT       
Sbjct: 39  IKGRANLSRSSSFMLTHTIPVPCLTTKAIASGVTKEAANMRSPSFSLDSSSTTI------ 98

Query: 61  VLVTKMKRKKKNKKKKCSMSYWTTFPCRISSTASATAAKPARRIQRPQMIIRDFENHENE 120
                                 T+FPCR+SS ASA  AKP+  + +   +     + EN 
Sbjct: 99  ----------------------TSFPCRMSSMASAMDAKPSVGLSKSSSV--SVSSSENL 139

Query: 121 AKSRYKTQQSI 132
           + +R K  + I
Sbjct: 159 SATRAKLAERI 139

[Close]
BLAST of CmoCh04G004290 vs. TrEMBL
Match: A0A0A9VI93_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.1e-10
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 3   GIRNLSRSSPFMATQTIPVPCFTMKAIASGVAACAAIIKSPSFSLSSSSTTST 56
           G  +LSRSS FM TQTIPVPC TMKAIASGV   AAII+SPSFSLSSSSTT T
Sbjct: 105 GSCSLSRSSSFMLTQTIPVPCLTMKAIASGVTFDAAIIRSPSFSLSSSSTTIT 157

[Close]
BLAST of CmoCh04G004290 vs. TrEMBL
Match: A0A0A9RNB8_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 3   GIRNLSRSSPFMATQTIPVPCFTMKAIASGVAACAAIIKSPSFSLSSSSTTST 56
           G  +LSRSS F+ TQTIPVPC TMKAIASGV   AAII+SPSFSLSSSSTT T
Sbjct: 105 GSCSLSRSSSFILTQTIPVPCLTMKAIASGVTFDAAIIRSPSFSLSSSSTTMT 157

The following BLAST results are available for this feature:
BLAST of CmoCh04G004290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G004290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9D1E5_ARUDO3.2e-1041.98Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9VI93_ARUDO7.1e-1079.25Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9RNB8_ARUDO1.6e-0977.36Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of CmoCh04G004290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G004290 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G004290.1CmoCh04G004290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G004290Cucurbita pepo (Zucchini)cmocpeB668
CmoCh04G004290Cucurbita pepo (Zucchini)cmocpeB671
CmoCh04G004290Cucurbita pepo (Zucchini)cmocpeB672
CmoCh04G004290Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G004290Cucurbita pepo (Zucchini)cmocpeB703
CmoCh04G004290Bottle gourd (USVL1VR-Ls)cmolsiB646
CmoCh04G004290Bottle gourd (USVL1VR-Ls)cmolsiB659
CmoCh04G004290Cucumber (Gy14) v2cgybcmoB516
CmoCh04G004290Cucumber (Gy14) v2cgybcmoB518
CmoCh04G004290Cucumber (Gy14) v2cgybcmoB528
CmoCh04G004290Cucumber (Gy14) v2cgybcmoB948
CmoCh04G004290Melon (DHL92) v3.6.1cmomedB751
CmoCh04G004290Melon (DHL92) v3.6.1cmomedB782
CmoCh04G004290Melon (DHL92) v3.6.1cmomedB788
CmoCh04G004290Silver-seed gourdcarcmoB0403
CmoCh04G004290Silver-seed gourdcarcmoB0514
CmoCh04G004290Silver-seed gourdcarcmoB1177
CmoCh04G004290Silver-seed gourdcarcmoB1178
CmoCh04G004290Cucumber (Chinese Long) v3cmocucB0830
CmoCh04G004290Cucumber (Chinese Long) v3cmocucB0841
CmoCh04G004290Cucumber (Chinese Long) v3cmocucB0910
CmoCh04G004290Watermelon (97103) v2cmowmbB684
CmoCh04G004290Watermelon (97103) v2cmowmbB694
CmoCh04G004290Watermelon (97103) v2cmowmbB749
CmoCh04G004290Watermelon (97103) v2cmowmbB771
CmoCh04G004290Wax gourdcmowgoB0810
CmoCh04G004290Cucurbita moschata (Rifu)cmocmoB125
CmoCh04G004290Cucurbita moschata (Rifu)cmocmoB286
CmoCh04G004290Cucurbita moschata (Rifu)cmocmoB289
CmoCh04G004290Cucurbita moschata (Rifu)cmocmoB395
CmoCh04G004290Cucumber (Gy14) v1cgycmoB0197
CmoCh04G004290Cucumber (Gy14) v1cgycmoB0632
CmoCh04G004290Cucumber (Gy14) v1cgycmoB1102
CmoCh04G004290Cucumber (Gy14) v1cgycmoB1101
CmoCh04G004290Cucurbita maxima (Rimu)cmacmoB156
CmoCh04G004290Cucurbita maxima (Rimu)cmacmoB338
CmoCh04G004290Cucurbita maxima (Rimu)cmacmoB530
CmoCh04G004290Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G004290Wild cucumber (PI 183967)cmocpiB708
CmoCh04G004290Wild cucumber (PI 183967)cmocpiB710
CmoCh04G004290Wild cucumber (PI 183967)cmocpiB720
CmoCh04G004290Wild cucumber (PI 183967)cmocpiB777
CmoCh04G004290Cucumber (Chinese Long) v2cmocuB700
CmoCh04G004290Cucumber (Chinese Long) v2cmocuB702
CmoCh04G004290Cucumber (Chinese Long) v2cmocuB710
CmoCh04G004290Cucumber (Chinese Long) v2cmocuB770
CmoCh04G004290Melon (DHL92) v3.5.1cmomeB665
CmoCh04G004290Melon (DHL92) v3.5.1cmomeB689
CmoCh04G004290Melon (DHL92) v3.5.1cmomeB694
CmoCh04G004290Watermelon (Charleston Gray)cmowcgB607
CmoCh04G004290Watermelon (Charleston Gray)cmowcgB610
CmoCh04G004290Watermelon (Charleston Gray)cmowcgB619
CmoCh04G004290Watermelon (97103) v1cmowmB658
CmoCh04G004290Watermelon (97103) v1cmowmB648