CmoCh04G002200 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G002200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 1110353 .. 1111224 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCAAAGTAGGGTTTCTTTACTTTATGCCTTTCTCTCTCTAGATTCTAATTTGTTAGCCATGCATGGTGCTGTGGCTAGAGAGAGAAATTATAATATAAATTAAGCTTTTTAGTGGGTCTTTGAGGTGAGAGAAGGAATATTATTATTAACTAATTAATTAATTAATTAAAATATGAATAAATAAAAAGAAGATGAACAAAAATAAAAAAGGTGATGGGTGGAGGGAATACTCTGGGTGGAAGTGTCGCAATCGAATGTACCTTTGTTTCCACTATTACCCTTCTTTTGTTTTCTTCTTAATTATATTCTTTTATTATTTTCACTTTTTTCTTAATACTTCTTAATTAAGAAAACAAAATTAAAAATACATTTATTTCCAATAATTTATTTTCATAACGTTTGAGTATATTTTATTTATTTATTTTTAGTTTAGTGAAACTTNAACCAATACAATCTACGAGACGCAATTGCACGGTGTACCACTCAGGTAAAACCAAGCTCTAGTTTTCATTTACTTTACAACCATTTGTGAAGCATGAGGAAGAAAGATGAAGCTGTTGTTCATGGCAGGTGTATCCGAAGTCATGGACTGCAATATATGTGGCGCTGGACAACGTGGGAATGTGGAATTTAAGGTCGGAATTCTGGGCAAGGCAGTACCTGGGTCAACAGTTTTACTTGAGAGTTTACACGCCATCGACTTCATTGAGAGACGAGTACCCAATTCCAAAGAATGCTCTGCTCTGTGGAAGAGCCACTGGGAGACGAACCAGGCCACTCTAGGCTCTATCCTCTGAGCTCAACACAATCAAATGATTTGTCATGTCGTATCATATCATATTTAGTTCTTCTGGGAAGGATATTC

mRNA sequence

ATGGCCACCAAAGTAGGTTTAGTGAAACTTNAACCAATACAATCTACGAGACGCAATTGCACGGTGTACCACTCAGGTGTATCCGAAGTCATGGACTGCAATATATGTGGCGCTGGACAACGTGGGAATGTGGAATTTAAGGTCGGAATTCTGGGCAAGGCAGTACCTGGGTCAACAGTTTTACTTGAGAGTTTACACGCCATCGACTTCATTGAGAGACGAGTACCCAATTCCAAAGAATGCTCTGCTCTGTGGAAGAGCCACTGGGAGACGAACCAGGCCACTCTAGGCTCTATCCTCTGAGCTCAACACAATCAAATGATTTGTCATGTCGTATCATATCATATTTAGTTCTTCTGGGAAGGATATTC

Coding sequence (CDS)

ATGGCCACCAAAGTAGGTTTAGTGAAACTTNAACCAATACAATCTACGAGACGCAATTGCACGGTGTACCACTCAGGTGTATCCGAAGTCATGGACTGCAATATATGTGGCGCTGGACAACGTGGGAATGTGGAATTTAAGGTCGGAATTCTGGGCAAGGCAGTACCTGGGTCAACAGTTTTACTTGAGAGTTTACACGCCATCGACTTCATTGAGAGACGAGTACCCAATTCCAAAGAATGCTCTGCTCTGTGGAAGAGCCACTGGGAGACGAACCAGGCCACTCTAGGCTCTATCCTCTGA
Homology
[Close]
BLAST of CmoCh04G002200 vs. TrEMBL
Match: C0P3Q0_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-06
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 13  IQSTRRNCTVYHSGVSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAIDFIE 72
           +Q   R   V+ SGV +++D ++   GQRG+VE  VG LG+AVPG+ VL   L A+  + 
Sbjct: 266 LQPEGRRFAVHCSGVPQIVDGDLHAPGQRGHVERPVGELGQAVPGAAVLPPRLDAVHVVA 325

Query: 73  RRVPNSKE 81
           RRVP+ +E
Sbjct: 326 RRVPHPQE 333

[Close]
BLAST of CmoCh04G002200 vs. NCBI nr
Match: gi|223947065|gb|ACN27616.1| (unknown [Zea mays])

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-06
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 13  IQSTRRNCTVYHSGVSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAIDFIE 72
           +Q   R   V+ SGV +++D ++   GQRG+VE  VG LG+AVPG+ VL   L A+  + 
Sbjct: 266 LQPEGRRFAVHCSGVPQIVDGDLHAPGQRGHVERPVGELGQAVPGAAVLPPRLDAVHVVA 325

Query: 73  RRVPNSKE 81
           RRVP+ +E
Sbjct: 326 RRVPHPQE 333

The following BLAST results are available for this feature:
BLAST of CmoCh04G002200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G002200 vs. TrEMBL
Match NameE-valueIdentityDescription
C0P3Q0_MAIZE3.1e-0644.12Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
BLAST of CmoCh04G002200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G002200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223947065|gb|ACN27616.1|4.4e-0644.12unknown [Zea mays][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G002200.1CmoCh04G002200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G002200Wax gourdcmowgoB0821
CmoCh04G002200Wax gourdcmowgoB0842
CmoCh04G002200Wax gourdcmowgoB0876
CmoCh04G002200Wax gourdcmowgoB0877
CmoCh04G002200Wax gourdcmowgoB0893
CmoCh04G002200Cucurbita moschata (Rifu)cmocmoB259
CmoCh04G002200Cucurbita moschata (Rifu)cmocmoB421
CmoCh04G002200Cucurbita moschata (Rifu)cmocmoB433
CmoCh04G002200Cucurbita moschata (Rifu)cmocmoB448
CmoCh04G002200Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G002200Cucurbita moschata (Rifu)cmocmoB478
CmoCh04G002200Cucumber (Gy14) v1cgycmoB0474
CmoCh04G002200Cucumber (Gy14) v1cgycmoB1048
CmoCh04G002200Cucurbita maxima (Rimu)cmacmoB307
CmoCh04G002200Cucurbita maxima (Rimu)cmacmoB660
CmoCh04G002200Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G002200Cucurbita maxima (Rimu)cmacmoB731
CmoCh04G002200Wild cucumber (PI 183967)cmocpiB747
CmoCh04G002200Wild cucumber (PI 183967)cmocpiB721
CmoCh04G002200Wild cucumber (PI 183967)cmocpiB755
CmoCh04G002200Cucumber (Chinese Long) v2cmocuB746
CmoCh04G002200Cucumber (Chinese Long) v2cmocuB711
CmoCh04G002200Cucumber (Chinese Long) v2cmocuB737
CmoCh04G002200Melon (DHL92) v3.5.1cmomeB619
CmoCh04G002200Melon (DHL92) v3.5.1cmomeB646
CmoCh04G002200Melon (DHL92) v3.5.1cmomeB704
CmoCh04G002200Watermelon (Charleston Gray)cmowcgB604
CmoCh04G002200Watermelon (Charleston Gray)cmowcgB651
CmoCh04G002200Watermelon (Charleston Gray)cmowcgB676
CmoCh04G002200Watermelon (97103) v1cmowmB644
CmoCh04G002200Watermelon (97103) v1cmowmB673
CmoCh04G002200Watermelon (97103) v1cmowmB715
CmoCh04G002200Cucurbita pepo (Zucchini)cmocpeB653
CmoCh04G002200Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G002200Cucurbita pepo (Zucchini)cmocpeB674
CmoCh04G002200Cucurbita pepo (Zucchini)cmocpeB692
CmoCh04G002200Cucurbita pepo (Zucchini)cmocpeB705
CmoCh04G002200Bottle gourd (USVL1VR-Ls)cmolsiB619
CmoCh04G002200Bottle gourd (USVL1VR-Ls)cmolsiB630
CmoCh04G002200Bottle gourd (USVL1VR-Ls)cmolsiB634
CmoCh04G002200Bottle gourd (USVL1VR-Ls)cmolsiB655
CmoCh04G002200Bottle gourd (USVL1VR-Ls)cmolsiB670
CmoCh04G002200Cucumber (Gy14) v2cgybcmoB389
CmoCh04G002200Cucumber (Gy14) v2cgybcmoB522
CmoCh04G002200Cucumber (Gy14) v2cgybcmoB652
CmoCh04G002200Cucumber (Gy14) v2cgybcmoB662
CmoCh04G002200Melon (DHL92) v3.6.1cmomedB710
CmoCh04G002200Melon (DHL92) v3.6.1cmomedB733
CmoCh04G002200Melon (DHL92) v3.6.1cmomedB770
CmoCh04G002200Melon (DHL92) v3.6.1cmomedB798
CmoCh04G002200Silver-seed gourdcarcmoB0123
CmoCh04G002200Silver-seed gourdcarcmoB0369
CmoCh04G002200Silver-seed gourdcarcmoB0422
CmoCh04G002200Silver-seed gourdcarcmoB0924
CmoCh04G002200Silver-seed gourdcarcmoB1247
CmoCh04G002200Cucumber (Chinese Long) v3cmocucB0817
CmoCh04G002200Cucumber (Chinese Long) v3cmocucB0837
CmoCh04G002200Cucumber (Chinese Long) v3cmocucB0873
CmoCh04G002200Cucumber (Chinese Long) v3cmocucB0882
CmoCh04G002200Cucumber (Chinese Long) v3cmocucB0908
CmoCh04G002200Watermelon (97103) v2cmowmbB693
CmoCh04G002200Watermelon (97103) v2cmowmbB716
CmoCh04G002200Watermelon (97103) v2cmowmbB722
CmoCh04G002200Watermelon (97103) v2cmowmbB755
CmoCh04G002200Watermelon (97103) v2cmowmbB768