CmoCh04G002010 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G002010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionVesicle transport v-SNARE 12
LocationCmo_Chr04 : 999998 .. 1002652 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGGAAGGCATATTGACGTTGTCGGCAATTACTTTAGGTGTCTAACACTTCACAAACAAACTTCTCATCCGTTTCCGCTTTCCGAATAGGCTCGGCCTCTGTAACTTCCGATTTCCGATCTGCCGAGTTTTGCTGGAAAATTTTGAGCGAAGGAGTCGCCAGAAGGTCAACGTGAACTTTTCTCAGTCTTTCGTGAGAGTTTAGTCAAGATGAGTGAGGTTTTCGATGGGTACGAGCGCCAGTATTGTGAACTCTCCGCGAATGTTTCTCGGAAATACAACTCTTTCTCCGCCTCCGATTCAGGTACTTTCGGAGTGTTTTCTTTGTTCAATTTGACTTATGTGAGGGTTAACCTAGGCTTTTACCGCTACGATTTTCTATGTTTCGTTCCTAATTTGAAGGAAGAGATTTGTTTCTGTTGTTAGAGTTTGGAAGAGAATTCTTGAAATTGTGGTTGGAGATCTCGAGTTGAATGAGCAGATTCTGAAGTTTCGAAATCTTTGGAGATGAATGAAGGGATGTGAACATGGGATGAGGAATTTGTAGCTGATGGGATCGAATTACGCATATGGGGAATTTTAGCGTTCCTTACTAATTCGTTAGATTTTGGTTGTAAAATGACTTGCATATGCTGAATTGGATTTCTTTTTGGAAATGAACTGAATGGGATCGAATTACGCATATGGGGAATTTTAACGTTTGAATGAATGTTAAAGAGACTCTTCTTTTTTGAGGTGAGCGATTGGAAGGGTTGCTAATTTTAGCTTAACATGAATTGCAGAGCAGAAACAGCAATGGCTTTCGGAAATCAAAGTTAGTTTAGATGAGGCCGATGTTTTGGTACGTTTGAAGAGCCTTCTTTTGGTTCTTTTCTTCTGTTTTTTAGGTTGGTTAGATTCTTAATTATATGAATTCAATGTTGCATCTTTTACGATTTCTAGATCCGGAAAATGGACCTTGAGGCCAGAAGTTTGCAGCCAGGGGTAAAGGCTATGCTACTTGCTAAGCTTCGGGAGTACAAAGCTGATCTTGGGAAACTGAAAAAGGAACTCAAGAGGTTTACATCACCAAACGCTAATCAAGCTGCCCGTGAAGAGCTGTTGGAGTCTGGAATGGCGGATACACATCTGGTAGATCTTGATAATTCAATTTTTACAGTTACCTTCAAATTTAAGCATCACTACTACCTCTTCAGTAATACTCCAGTCATGAGTTGGGTTCTTAGTCTGAAATCCAATTGTGGGAACATACTAATTCAATTGAAATAACATCAATTTTTATTACTTACAAAGAACTTGGAGGAAATGATTTCTATCATGTTAGCTATGTGCCTAGAATTTAGTAACATATAAGTTTTCTTTACAACCTAATCTAATATATTTAGATTAGTCGAGATGCTTGTAAGTTGGCCCAATCACAAACAGATATTATAAAAAAAATCTTAATGTATCTATAGTTCTATACAAAATGTCCAAAGTTTTTATTCAGTCCATGTTTGTTTTTTCAGCCTCTCTTGTCGCTGAAGGGATGATATTTTCTAAGTCATGTTGATAGTCCTATCTTTTCCCCTTCAGTTTCTTTTGCAATGGTTGTTGGCTTTTACGTCTCGATAACTTAAACATGTTTGTGGAGTTGAGTTGCTGGACGCACCTTCTACAGCCAGTTCGATTCACATCATAGGATCAGTCTCATATCTTTTATATAGCCATAGGCCAAACGGATCTCATCATTGGAACATCTGCTCTAATTTTGATAATTAGAAGATATTTGTCTTGCAGAGGTTTAATTGATCGTTTTTGTTACCTTTTCCGCGTTCTTACAGGCATCAGCTGATCAAAGGGAGAGGCTGACAATGTCCATAGAGAGAATAAATCAGTCTGGTGAAAGAATCACAGAGAGTAGAAGAACCATGCTGGAGACCGAGGAGCTCGGTGTCTCAATTCTCCAGGATTTACATCAACAACGTGAAACTCTCCTTCACTCCCATAAGAGAGTAAGTTTTTTCTTGATATTATGTTCTGGCTGACTAGTAAGTAAGTTCTTAGCCACTCACTAATTACTCTGAATAAATCCCATCTTTGATGCCATTAAAATCCTTCAACTTCAACTCACTAATTTTAATTGCCAGCTCTTTTTCCATCTTTGATGCCATTAAAATGCTTCATGTTGCAGCTTTATGGGGTAGATGATGCCATTGATAAGAGTAAAAAGGTTCTGGTCACGATGTCTCGAAGAATCAGTCGAAATAAATGGATTGTTGGGTCAGTAATCGGAGTTCTGGTACTCGTTATTATCCTTATAATATATCTTAAGCTTTAAGATCAGGAAGAGATCTCTCCTTGATCATGAAAGGAGTTGCACTCTTATCATTTGATTTTTCCAATTGTACGATTGGTTGTCGATCATATGTTTGATGTATTTTATTACCGATACCTCGTGTTCATGTCTGTAATCGGACCAAATCTTGTAACTCAATAGCATGTTAACTAATCAATACCAGATAGTAGGCAGCTCTTGATTGTGTATATAATGGTTAATTACTTTCTGTACATGCACTTTAGGAAGTCAGGAGCCATCGTCCATTGATGATTCCATTTTTTCAATTTTTTTGTACTGGAACTTACTATGATATAGTAATTGCACTAGATAGCATAG

mRNA sequence

CGGGAAGGCATATTGACGTTGTCGGCAATTACTTTAGGTGTCTAACACTTCACAAACAAACTTCTCATCCGTTTCCGCTTTCCGAATAGGCTCGGCCTCTGTAACTTCCGATTTCCGATCTGCCGAGTTTTGCTGGAAAATTTTGAGCGAAGGAGTCGCCAGAAGGTCAACGTGAACTTTTCTCAGTCTTTCGTGAGAGTTTAGTCAAGATGAGTGAGGTTTTCGATGGGTACGAGCGCCAGTATTGTGAACTCTCCGCGAATGTTTCTCGGAAATACAACTCTTTCTCCGCCTCCGATTCAGAGCAGAAACAGCAATGGCTTTCGGAAATCAAAGTTAGTTTAGATGAGGCCGATGTTTTGATCCGGAAAATGGACCTTGAGGCCAGAAGTTTGCAGCCAGGGGTAAAGGCTATGCTACTTGCTAAGCTTCGGGAGTACAAAGCTGATCTTGGGAAACTGAAAAAGGAACTCAAGAGGTTTACATCACCAAACGCTAATCAAGCTGCCCGTGAAGAGCTGTTGGAGTCTGGAATGGCGGATACACATCTGGCATCAGCTGATCAAAGGGAGAGGCTGACAATGTCCATAGAGAGAATAAATCAGTCTGGTGAAAGAATCACAGAGAGTAGAAGAACCATGCTGGAGACCGAGGAGCTCGGTGTCTCAATTCTCCAGGATTTACATCAACAACGTGAAACTCTCCTTCACTCCCATAAGAGAATAGCATAG

Coding sequence (CDS)

ATGAGTGAGGTTTTCGATGGGTACGAGCGCCAGTATTGTGAACTCTCCGCGAATGTTTCTCGGAAATACAACTCTTTCTCCGCCTCCGATTCAGAGCAGAAACAGCAATGGCTTTCGGAAATCAAAGTTAGTTTAGATGAGGCCGATGTTTTGATCCGGAAAATGGACCTTGAGGCCAGAAGTTTGCAGCCAGGGGTAAAGGCTATGCTACTTGCTAAGCTTCGGGAGTACAAAGCTGATCTTGGGAAACTGAAAAAGGAACTCAAGAGGTTTACATCACCAAACGCTAATCAAGCTGCCCGTGAAGAGCTGTTGGAGTCTGGAATGGCGGATACACATCTGGCATCAGCTGATCAAAGGGAGAGGCTGACAATGTCCATAGAGAGAATAAATCAGTCTGGTGAAAGAATCACAGAGAGTAGAAGAACCATGCTGGAGACCGAGGAGCTCGGTGTCTCAATTCTCCAGGATTTACATCAACAACGTGAAACTCTCCTTCACTCCCATAAGAGAATAGCATAG
Homology
[Close]
BLAST of CmoCh04G002010 vs. Swiss-Prot
Match: VTI12_ARATH (Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-54
Identity = 114/173 (65.90%), Postives = 144/173 (83.24%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSA-SDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MS+VF+GYERQYCELS N+SRK +S S  S+ E+K+  ++EIK  +DEADVLIRKMDLEA
Sbjct: 1   MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
           RSLQP  KA+ L+KLREYK+DL +LKKE KR +S +A  ++REEL+ESGMAD H  SADQ
Sbjct: 61  RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           R RL MS+ER++QS +RI ESRR MLETEE+G+SI+QDL QQR+TLLH+H ++
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKL 173

[Close]
BLAST of CmoCh04G002010 vs. Swiss-Prot
Match: VTI11_ARATH (Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2)

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-51
Identity = 109/172 (63.37%), Postives = 139/172 (80.81%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS+VFDGYERQYCELSA++S+K +S  + D EQK+Q LSEIK  L+ A+VLIRKMDLEAR
Sbjct: 1   MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           +L P +K+ LL KLRE+K+DL   K E+KR TS   N AAR+ELLE+GMADT  ASADQR
Sbjct: 61  TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
            RL MS ER+ ++ +R+ +SRRTM+ETEE+GVSILQDLH QR++LL +H+ +
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETL 172

[Close]
BLAST of CmoCh04G002010 vs. Swiss-Prot
Match: VTI13_ARATH (Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.3e-49
Identity = 106/172 (61.63%), Postives = 135/172 (78.49%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS+ F+ YERQYCE+SAN+S+K  S  A D EQK+Q LSEIK  ++EA+ L++KMDLEAR
Sbjct: 1   MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQNLSEIKSGVEEAEALVKKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           +L P VK+ LL KLREYK+DL   K E+KR TS N N  AR+ELLE+GMADT  ASADQR
Sbjct: 61  NLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
            RL MS + + ++ +RI +SRRT+LETEELGVSILQDLH QR++LL +H+ +
Sbjct: 121 SRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETL 172

[Close]
BLAST of CmoCh04G002010 vs. Swiss-Prot
Match: VTI1A_HUMAN (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 6.9e-15
Identity = 50/172 (29.07%), Postives = 95/172 (55.23%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS  F+GYE+ +  L+A ++ K         ++K+Q ++ ++  L+EA  L+ +MDLE R
Sbjct: 1   MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
            + P  + M   ++R YK ++GKL+ + KR     +  A  +E+    + D   +S +QR
Sbjct: 61  EIPPQSRGMYSNRMRSYKQEMGKLETDFKR-----SRIAYSDEVRNELLGDDGNSSENQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
             L  + ER+ +S  R+    +  +ETE++G  +L++L   RE +  + +R+
Sbjct: 121 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERL 167

[Close]
BLAST of CmoCh04G002010 vs. Swiss-Prot
Match: VTI1A_RAT (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.0e-15
Identity = 48/174 (27.59%), Postives = 98/174 (56.32%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS  F+GYE+ +  L+A ++ K +       ++K+Q ++ ++  L+EA  L+ +MDLE R
Sbjct: 1   MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTH--LASAD 120
            + P  + M   ++R YK ++GKL+ + KR     +++   E L ++G +  +  +   +
Sbjct: 61  EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELLGDAGNSSENQLIKLRE 120

Query: 121 QRERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           +R  L  + ER+ +S  R+    +  +ETE++G  +L++L   RE +  + +R+
Sbjct: 121 ERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERL 174

[Close]
BLAST of CmoCh04G002010 vs. TrEMBL
Match: A0A0A0KLX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182770 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.8e-77
Identity = 158/172 (91.86%), Postives = 165/172 (95.93%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS VF+GYERQYCELSANVSRK NSF+ASDSEQKQQWLSEIKVSLDEA+VLIRKMDLEAR
Sbjct: 1   MSTVFEGYERQYCELSANVSRKSNSFAASDSEQKQQWLSEIKVSLDEAEVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKA LLAKLREYKADLGKLKKE KR T+PNA+QAAREELLESGMAD HLASADQR
Sbjct: 61  SLQPGVKATLLAKLREYKADLGKLKKEFKRLTTPNADQAAREELLESGMADAHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ER+TMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLL SHKR+
Sbjct: 121 ERMTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLQSHKRL 172

[Close]
BLAST of CmoCh04G002010 vs. TrEMBL
Match: A0A151TA56_CAJCA (Vesicle transport v-SNARE 12 (Fragment) OS=Cajanus cajan GN=KK1_018537 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.0e-66
Identity = 142/173 (82.08%), Postives = 155/173 (89.60%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFS-ASDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MSEVF+GYERQYCELSAN+SRK +S S  SD EQKQQ LSEIK  LD+ADVLIRKMDLEA
Sbjct: 3   MSEVFEGYERQYCELSANLSRKCSSTSLVSDQEQKQQKLSEIKTGLDDADVLIRKMDLEA 62

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
           RSLQP VKAMLLAKLREYK+DL  LKKE KR TSP+A++AAREELLE+GMADTHLASADQ
Sbjct: 63  RSLQPSVKAMLLAKLREYKSDLTNLKKEFKRITSPSADEAAREELLETGMADTHLASADQ 122

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           RERLTMS+ER NQS ERI ES RT+LETEELGVSILQDLH QRETLL+SHKR+
Sbjct: 123 RERLTMSVERTNQSSERIRESHRTLLETEELGVSILQDLHSQRETLLNSHKRL 175

[Close]
BLAST of CmoCh04G002010 vs. TrEMBL
Match: I1JE83_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G111400 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.9e-65
Identity = 140/173 (80.92%), Postives = 155/173 (89.60%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFS-ASDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MSEVF+GYERQYCELSAN+SRK +S S  S  EQ+QQ LSEIK  LD+ADVLIRKMDLEA
Sbjct: 1   MSEVFEGYERQYCELSANLSRKCSSASLVSGQEQQQQKLSEIKAGLDDADVLIRKMDLEA 60

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
           RSLQP VKAMLLAKLREYK+DL  LKKE KR TSPNA++ AREELLE+GMA+THLASADQ
Sbjct: 61  RSLQPSVKAMLLAKLREYKSDLTNLKKEFKRLTSPNADEVAREELLETGMANTHLASADQ 120

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           RERLTMS+ERINQSGERI ES RT+LETEELGV+ILQDLH QRETLL+SHKR+
Sbjct: 121 RERLTMSVERINQSGERIRESHRTLLETEELGVNILQDLHSQRETLLNSHKRL 173

[Close]
BLAST of CmoCh04G002010 vs. TrEMBL
Match: C6T3Z1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.9e-65
Identity = 140/173 (80.92%), Postives = 155/173 (89.60%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFS-ASDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MSEVF+GYERQYCELSAN+SRK +S S  S  EQ+QQ LSEIK  LD+ADVLIRKMDLEA
Sbjct: 1   MSEVFEGYERQYCELSANLSRKCSSASLVSGQEQQQQKLSEIKAGLDDADVLIRKMDLEA 60

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
           RSLQP VKAMLLAKLREYK+DL  LKKE KR TSPNA++ AREELLE+GMA+THLASADQ
Sbjct: 61  RSLQPSVKAMLLAKLREYKSDLTNLKKEFKRLTSPNADEVAREELLETGMANTHLASADQ 120

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           RERLTMS+ERINQSGERI ES RT+LETEELGV+ILQDLH QRETLL+SHKR+
Sbjct: 121 RERLTMSVERINQSGERIRESHRTLLETEELGVNILQDLHSQRETLLNSHKRL 173

[Close]
BLAST of CmoCh04G002010 vs. TrEMBL
Match: A0A0B2P2S2_GLYSO (Vesicle transport v-SNARE 12 OS=Glycine soja GN=glysoja_034509 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.9e-65
Identity = 140/173 (80.92%), Postives = 155/173 (89.60%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFS-ASDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MSEVF+GYERQYCELSAN+SRK +S S  S  EQ+QQ LSEIK  LD+ADVLIRKMDLEA
Sbjct: 1   MSEVFEGYERQYCELSANLSRKCSSASLVSGQEQQQQKLSEIKAGLDDADVLIRKMDLEA 60

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
           RSLQP VKAMLLAKLREYK+DL  LKKE KR TSPNA++ AREELLE+GMA+THLASADQ
Sbjct: 61  RSLQPSVKAMLLAKLREYKSDLTNLKKEFKRLTSPNADEVAREELLETGMANTHLASADQ 120

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           RERLTMS+ERINQSGERI ES RT+LETEELGV+ILQDLH QRETLL+SHKR+
Sbjct: 121 RERLTMSVERINQSGERIRESHRTLLETEELGVNILQDLHSQRETLLNSHKRL 173

[Close]
BLAST of CmoCh04G002010 vs. TAIR10
Match: AT1G26670.1 (AT1G26670.1 Vesicle transport v-SNARE family protein)

HSP 1 Score: 214.2 bits (544), Expect = 6.5e-56
Identity = 114/173 (65.90%), Postives = 144/173 (83.24%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSA-SDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MS+VF+GYERQYCELS N+SRK +S S  S+ E+K+  ++EIK  +DEADVLIRKMDLEA
Sbjct: 1   MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
           RSLQP  KA+ L+KLREYK+DL +LKKE KR +S +A  ++REEL+ESGMAD H  SADQ
Sbjct: 61  RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           R RL MS+ER++QS +RI ESRR MLETEE+G+SI+QDL QQR+TLLH+H ++
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKL 173

[Close]
BLAST of CmoCh04G002010 vs. TAIR10
Match: AT5G39510.1 (AT5G39510.1 Vesicle transport v-SNARE family protein)

HSP 1 Score: 203.8 bits (517), Expect = 8.8e-53
Identity = 109/172 (63.37%), Postives = 139/172 (80.81%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS+VFDGYERQYCELSA++S+K +S  + D EQK+Q LSEIK  L+ A+VLIRKMDLEAR
Sbjct: 1   MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           +L P +K+ LL KLRE+K+DL   K E+KR TS   N AAR+ELLE+GMADT  ASADQR
Sbjct: 61  TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
            RL MS ER+ ++ +R+ +SRRTM+ETEE+GVSILQDLH QR++LL +H+ +
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETL 172

[Close]
BLAST of CmoCh04G002010 vs. TAIR10
Match: AT3G29100.1 (AT3G29100.1 vesicle transport V-snare 13)

HSP 1 Score: 142.1 bits (357), Expect = 3.2e-34
Identity = 76/121 (62.81%), Postives = 96/121 (79.34%), Query Frame = 1 

Query: 52  IRKMDLEARSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMAD 111
           ++KMDLEAR+L P VK+ LL KLREYK+DL   K E+KR TS N N  AR+ELLE+GMAD
Sbjct: 26  VKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMAD 85

Query: 112 THLASADQRERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKR 171
           T  ASADQR RL MS + + ++ +RI +SRRT+LETEELGVSILQDLH QR++LL +H+ 
Sbjct: 86  TLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHET 145

Query: 172 I 173
           +
Sbjct: 146 L 146

[Close]
BLAST of CmoCh04G002010 vs. TAIR10
Match: AT5G39630.1 (AT5G39630.1 Vesicle transport v-SNARE family protein)

HSP 1 Score: 121.7 bits (304), Expect = 4.4e-28
Identity = 78/169 (46.15%), Postives = 114/169 (67.46%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYN-SFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MS VF  Y++QY ELS N+S+K + +FS    E+K++ LSEI   L+ A+ LI KMD  A
Sbjct: 1   MSNVFHEYDQQYSELSINLSKKCSLAFSLKGGEKKEK-LSEITYDLENAEKLISKMDHAA 60

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
            +L P +K++LL KL+E K+ L +L+ E+KR TS N     REE+LE+  AD     ADQ
Sbjct: 61  SNLPPNIKSILLEKLKESKSSLKRLRNEIKRNTSENLKVTTREEVLEAEKADL----ADQ 120

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHS 169
           R RL  S E + ++ E I +S+R +LETE +G+SIL++L +Q+E+L +S
Sbjct: 121 RSRLMKSTEGLVRTREMIKDSQRKLLETENIGISILENLQRQKESLQNS 164

[Close]
BLAST of CmoCh04G002010 vs. NCBI nr
Match: gi|659123502|ref|XP_008461698.1| (PREDICTED: vesicle transport v-SNARE 12-like [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 4.4e-78
Identity = 160/172 (93.02%), Postives = 166/172 (96.51%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MSEVF+GYERQYCELSANVSRK NSF+ASDSEQKQQWLSEIKVSLDEA+VLIRKMDLEAR
Sbjct: 1   MSEVFEGYERQYCELSANVSRKSNSFAASDSEQKQQWLSEIKVSLDEAEVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKAMLLAKLREYK DLGKLKKE KR TSPNA+QAAREELLESGMAD HLASADQR
Sbjct: 61  SLQPGVKAMLLAKLREYKTDLGKLKKEFKRLTSPNADQAAREELLESGMADAHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ER+TMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLL SHKR+
Sbjct: 121 ERMTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLQSHKRL 172

[Close]
BLAST of CmoCh04G002010 vs. NCBI nr
Match: gi|449459886|ref|XP_004147677.1| (PREDICTED: vesicle transport v-SNARE 12-like [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 8.3e-77
Identity = 158/172 (91.86%), Postives = 165/172 (95.93%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFSASDSEQKQQWLSEIKVSLDEADVLIRKMDLEAR 60
           MS VF+GYERQYCELSANVSRK NSF+ASDSEQKQQWLSEIKVSLDEA+VLIRKMDLEAR
Sbjct: 1   MSTVFEGYERQYCELSANVSRKSNSFAASDSEQKQQWLSEIKVSLDEAEVLIRKMDLEAR 60

Query: 61  SLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQR 120
           SLQPGVKA LLAKLREYKADLGKLKKE KR T+PNA+QAAREELLESGMAD HLASADQR
Sbjct: 61  SLQPGVKATLLAKLREYKADLGKLKKEFKRLTTPNADQAAREELLESGMADAHLASADQR 120

Query: 121 ERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           ER+TMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLL SHKR+
Sbjct: 121 ERMTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLQSHKRL 172

[Close]
BLAST of CmoCh04G002010 vs. NCBI nr
Match: gi|1012352762|gb|KYP63950.1| (Vesicle transport v-SNARE 12, partial [Cajanus cajan])

HSP 1 Score: 258.5 bits (659), Expect = 8.6e-66
Identity = 142/173 (82.08%), Postives = 155/173 (89.60%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFS-ASDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MSEVF+GYERQYCELSAN+SRK +S S  SD EQKQQ LSEIK  LD+ADVLIRKMDLEA
Sbjct: 3   MSEVFEGYERQYCELSANLSRKCSSTSLVSDQEQKQQKLSEIKTGLDDADVLIRKMDLEA 62

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
           RSLQP VKAMLLAKLREYK+DL  LKKE KR TSP+A++AAREELLE+GMADTHLASADQ
Sbjct: 63  RSLQPSVKAMLLAKLREYKSDLTNLKKEFKRITSPSADEAAREELLETGMADTHLASADQ 122

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           RERLTMS+ER NQS ERI ES RT+LETEELGVSILQDLH QRETLL+SHKR+
Sbjct: 123 RERLTMSVERTNQSSERIRESHRTLLETEELGVSILQDLHSQRETLLNSHKRL 175

[Close]
BLAST of CmoCh04G002010 vs. NCBI nr
Match: gi|734315605|gb|KHN01987.1| (Vesicle transport v-SNARE 12 [Glycine soja])

HSP 1 Score: 255.8 bits (652), Expect = 5.6e-65
Identity = 140/173 (80.92%), Postives = 155/173 (89.60%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFS-ASDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MSEVF+GYERQYCELSAN+SRK +S S  S  EQ+QQ LSEIK  LD+ADVLIRKMDLEA
Sbjct: 1   MSEVFEGYERQYCELSANLSRKCSSASLVSGQEQQQQKLSEIKAGLDDADVLIRKMDLEA 60

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
           RSLQP VKAMLLAKLREYK+DL  LKKE KR TSPNA++ AREELLE+GMA+THLASADQ
Sbjct: 61  RSLQPSVKAMLLAKLREYKSDLTNLKKEFKRLTSPNADEVAREELLETGMANTHLASADQ 120

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           RERLTMS+ERINQSGERI ES RT+LETEELGV+ILQDLH QRETLL+SHKR+
Sbjct: 121 RERLTMSVERINQSGERIRESHRTLLETEELGVNILQDLHSQRETLLNSHKRL 173

[Close]
BLAST of CmoCh04G002010 vs. NCBI nr
Match: gi|351725521|ref|NP_001238119.1| (uncharacterized protein LOC100527319 [Glycine max])

HSP 1 Score: 255.8 bits (652), Expect = 5.6e-65
Identity = 140/173 (80.92%), Postives = 155/173 (89.60%), Query Frame = 1 

Query: 1   MSEVFDGYERQYCELSANVSRKYNSFS-ASDSEQKQQWLSEIKVSLDEADVLIRKMDLEA 60
           MSEVF+GYERQYCELSAN+SRK +S S  S  EQ+QQ LSEIK  LD+ADVLIRKMDLEA
Sbjct: 1   MSEVFEGYERQYCELSANLSRKCSSASLVSGQEQQQQKLSEIKAGLDDADVLIRKMDLEA 60

Query: 61  RSLQPGVKAMLLAKLREYKADLGKLKKELKRFTSPNANQAAREELLESGMADTHLASADQ 120
           RSLQP VKAMLLAKLREYK+DL  LKKE KR TSPNA++ AREELLE+GMA+THLASADQ
Sbjct: 61  RSLQPSVKAMLLAKLREYKSDLTNLKKEFKRLTSPNADEVAREELLETGMANTHLASADQ 120

Query: 121 RERLTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLHSHKRI 173
           RERLTMS+ERINQSGERI ES RT+LETEELGV+ILQDLH QRETLL+SHKR+
Sbjct: 121 RERLTMSVERINQSGERIRESHRTLLETEELGVNILQDLHSQRETLLNSHKRL 173

The following BLAST results are available for this feature:
BLAST of CmoCh04G002010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
VTI12_ARATH1.2e-5465.90Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3[more]
VTI11_ARATH1.6e-5163.37Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2[more]
VTI13_ARATH3.3e-4961.63Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1[more]
VTI1A_HUMAN6.9e-1529.07Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens G... [more]
VTI1A_RAT9.0e-1527.59Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegi... [more]
BLAST of CmoCh04G002010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLX2_CUCSA5.8e-7791.86Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182770 PE=4 SV=1[more]
A0A151TA56_CAJCA6.0e-6682.08Vesicle transport v-SNARE 12 (Fragment) OS=Cajanus cajan GN=KK1_018537 PE=4 SV=1[more]
I1JE83_SOYBN3.9e-6580.92Uncharacterized protein OS=Glycine max GN=GLYMA_02G111400 PE=4 SV=1[more]
C6T3Z1_SOYBN3.9e-6580.92Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A0B2P2S2_GLYSO3.9e-6580.92Vesicle transport v-SNARE 12 OS=Glycine soja GN=glysoja_034509 PE=4 SV=1[more]
BLAST of CmoCh04G002010 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26670.16.5e-5665.90 Vesicle transport v-SNARE family protein[more]
AT5G39510.18.8e-5363.37 Vesicle transport v-SNARE family protein[more]
AT3G29100.13.2e-3462.81 vesicle transport V-snare 13[more]
AT5G39630.14.4e-2846.15 Vesicle transport v-SNARE family protein[more]
BLAST of CmoCh04G002010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123502|ref|XP_008461698.1|4.4e-7893.02PREDICTED: vesicle transport v-SNARE 12-like [Cucumis melo][more]
gi|449459886|ref|XP_004147677.1|8.3e-7791.86PREDICTED: vesicle transport v-SNARE 12-like [Cucumis sativus][more]
gi|1012352762|gb|KYP63950.1|8.6e-6682.08Vesicle transport v-SNARE 12, partial [Cajanus cajan][more]
gi|734315605|gb|KHN01987.1|5.6e-6580.92Vesicle transport v-SNARE 12 [Glycine soja][more]
gi|351725521|ref|NP_001238119.1|5.6e-6580.92uncharacterized protein LOC100527319 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007705Vesicle_trsprt_v-SNARE_N
IPR010989SNARE
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016049 cell growth
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016197 endosomal transport
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0006869 lipid transport
biological_process GO:0010351 lithium ion transport
biological_process GO:0061025 membrane fusion
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005768 endosome
cellular_component GO:0016020 membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005770 late endosome
cellular_component GO:0005794 Golgi apparatus
molecular_function GO:0005483 soluble NSF attachment protein activity
molecular_function GO:0005484 SNAP receptor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G002010.1CmoCh04G002010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007705Vesicle transport v-SNARE, N-terminalPFAMPF05008V-SNAREcoord: 12..90
score: 4.7
IPR010989t-SNAREunknownSSF47661t-snare proteinscoord: 6..92
score: 8.63
NoneNo IPR availableunknownCoilCoilcoord: 67..87
scor
NoneNo IPR availableGENE3DG3DSA:1.20.5.110coord: 128..172
score: 3.4
NoneNo IPR availableGENE3DG3DSA:1.20.58.400coord: 1..97
score: 8.8
NoneNo IPR availablePANTHERPTHR21230VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATEDcoord: 1..172
score: 1.4E
NoneNo IPR availablePANTHERPTHR21230:SF32SUBFAMILY NOT NAMEDcoord: 1..172
score: 1.4E
NoneNo IPR availablePFAMPF12352V-SNARE_Ccoord: 128..172
score: 1.1
NoneNo IPR availableunknownSSF58038SNARE fusion complexcoord: 130..172
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G002010Cucsa.165120Cucumber (Gy14) v1cgycmoB0474
CmoCh04G002010Cla003992Watermelon (97103) v1cmowmB673
CmoCh04G002010Csa5G182770Cucumber (Chinese Long) v2cmocuB737
CmoCh04G002010MELO3C023882Melon (DHL92) v3.5.1cmomeB646
CmoCh04G002010ClCG07G003550Watermelon (Charleston Gray)cmowcgB676
CmoCh04G002010CSPI05G09850Wild cucumber (PI 183967)cmocpiB747
CmoCh04G002010Lsi04G009040Bottle gourd (USVL1VR-Ls)cmolsiB670
CmoCh04G002010Cp4.1LG01g04980Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G002010MELO3C023882.2Melon (DHL92) v3.6.1cmomedB733
CmoCh04G002010CsaV3_5G008320Cucumber (Chinese Long) v3cmocucB0873
CmoCh04G002010Cla97C07G131850Watermelon (97103) v2cmowmbB755
CmoCh04G002010Bhi06G000867Wax gourdcmowgoB0837
CmoCh04G002010CsGy5G007220Cucumber (Gy14) v2cgybcmoB652
CmoCh04G002010Carg18335Silver-seed gourdcarcmoB0123
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G002010Watermelon (97103) v2cmowmbB722
CmoCh04G002010Wax gourdcmowgoB0864
CmoCh04G002010Cucurbita moschata (Rifu)cmocmoB267
CmoCh04G002010Cucurbita moschata (Rifu)cmocmoB448
CmoCh04G002010Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G002010Cucurbita moschata (Rifu)cmocmoB478
CmoCh04G002010Cucumber (Gy14) v1cgycmoB0373
CmoCh04G002010Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G002010Cucurbita maxima (Rimu)cmacmoB731
CmoCh04G002010Wild cucumber (PI 183967)cmocpiB776
CmoCh04G002010Cucumber (Chinese Long) v2cmocuB767
CmoCh04G002010Melon (DHL92) v3.5.1cmomeB676
CmoCh04G002010Watermelon (Charleston Gray)cmowcgB630
CmoCh04G002010Watermelon (97103) v1cmowmB737
CmoCh04G002010Cucurbita pepo (Zucchini)cmocpeB653
CmoCh04G002010Cucurbita pepo (Zucchini)cmocpeB674
CmoCh04G002010Bottle gourd (USVL1VR-Ls)cmolsiB630
CmoCh04G002010Bottle gourd (USVL1VR-Ls)cmolsiB649
CmoCh04G002010Cucumber (Gy14) v2cgybcmoB522
CmoCh04G002010Cucumber (Gy14) v2cgybcmoB823
CmoCh04G002010Melon (DHL92) v3.6.1cmomedB798
CmoCh04G002010Silver-seed gourdcarcmoB0372
CmoCh04G002010Silver-seed gourdcarcmoB0924
CmoCh04G002010Silver-seed gourdcarcmoB1247
CmoCh04G002010Cucumber (Chinese Long) v3cmocucB0837
CmoCh04G002010Cucumber (Chinese Long) v3cmocucB0906