CmoCh04G000890 (gene) Cucurbita moschata (Rifu)

BLAST of CmoCh04G000890 vs. Swiss-Prot
Match: RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1407.1 bits (3641), Expect = 0.0e+00
Identity = 709/1129 (62.80%), Postives = 853/1129 (75.55%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            MGKT+ + GFP+  +A+ VK FLE  TG GTVYAIKVR PK+GG RVYAIVQF       
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
            LII+ A +RL+YG SYLKA   + DIVPKPR  +HT+  L + FGCQVS++KF  LW   
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
               V+FG+ MRK++F       +YR +LSYENIWQI LH  Q +S K L+IQ+ GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            +K       +F   + +F+ +  D+QW+RT DFT S+ +GQS++ CL+LP    +P+FR 
Sbjct: 181  EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCS-DDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGP 300
            +FA Y E      L++ G+S+S + + LVPVVD  P   LP+EI+FK+N LVQN C++GP
Sbjct: 241  NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300

Query: 301  SLDTGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKY---AKHPSNSPA 360
            +LD  FYRL++  +     +++ LEKLFHL ECCYEP+ +L ++YKK+    K P  SP 
Sbjct: 301  ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPL-SPT 360

Query: 361  IALDDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRST 420
            I+LDDGLVY+ RVQ+TP +VYF GPEVNVSNRVLRH+S+ ++NFLRVSFVDE+ +K+RS 
Sbjct: 361  ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 420

Query: 421  DLLPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGL 480
            DL PR ++     +T +Y RI SVL++GI IGDKKF+FLAFSSSQLRENS WMFA    +
Sbjct: 421  DLSPRSSTQ---RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRI 480

Query: 481  DAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVF 540
             AA IR WMGDF HI+N AKYAARLGQSF SS ETL+V   E E+IPD+E+     +YVF
Sbjct: 481  TAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 540

Query: 541  SDGIGKISSDFAKRVASKCVLA-FTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFE 600
            SDGIGKIS++FA++VA KC L  F+PSAFQIRYGGYKGVVAVDP SS KLSLRKSM KFE
Sbjct: 541  SDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 600

Query: 601  SDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQE 660
            S+NTKLDVL +SKYQPC++NRQLITLLSTLGV D VFEKKQ E +++LDAILT PL+A E
Sbjct: 601  SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 660

Query: 661  ALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMM 720
            AL LM+PGENTNILK ++ CGYKPD EP+LSMMLQ FR SKLLELRTK+RIFI  GR+MM
Sbjct: 661  ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 720

Query: 721  GCLDETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDV 780
            GCLDET TLEYGQV VQ S             D        +I G V VAKNPCLHPGDV
Sbjct: 721  GCLDETRTLEYGQVVVQYS-------------DPMRPGRRFIITGPVVVAKNPCLHPGDV 780

Query: 781  RVLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMD 840
            RVL AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD EL+PPR   PMD
Sbjct: 781  RVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMD 840

Query: 841  YTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKL 900
            YTP P   LD DVTIE+V+EYF NY+VNDSLGIIANAHTAFADKEP KA S PCIELAK 
Sbjct: 841  YTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKK 900

Query: 901  FSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYI 960
            FS AVDFPKTGV A+IP HL VKE+PDFMEKPD+P+YESKNVIGKLFR VK  AP +  I
Sbjct: 901  FSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISI 960

Query: 961  RSFTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIM 1020
            +SFT DVA + YD DME +GFE+YV++A Y K  YD+KLGNL+DYYGIK+E+EI SG IM
Sbjct: 961  KSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM 1020

Query: 1021 RMSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSY 1080
            RMSKSFT+RRDAE+I  A R+LRKE  + FN  E       ++  AKASAWYHVTYH SY
Sbjct: 1021 RMSKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EENESAKASAWYHVTYHSSY 1080

Query: 1081 WGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSR 1125
            WG YN+G+ RDH+LSF WCVY KL+++K+ NL RR++   L  LD   R
Sbjct: 1081 WGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLERLDHVLR 1105

BLAST of CmoCh04G000890 vs. Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 961.1 bits (2483), Expect = 1.1e-278
Identity = 481/746 (64.48%), Postives = 586/746 (78.55%), Query Frame = 1

Query: 376  VYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLLPRMASSIENGKTDIYR 435
            VYF GPE+NVSNRV+R+FS D++NFLR+SFVDE+ +K+R+TDL PR AS  +  +T +Y+
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 436  RILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAAVIREWMGDFRHIKNPA 495
            R+LSVL +GI IG K F+FLAFSSSQLR+NS WMFASR GL A+ IR WMGDFR+I+N A
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 496  KYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSDGIGKISSDFAKRVASKC 555
            KYAARLGQSF SSTETL V ++E E I DI+      ++VFSDGIGKISS FA  VA KC
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAMKC 188

Query: 556  VLA-FTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNTKLDVLGYSKYQPCFL 615
             L  F PSAFQIRYGGYKGVVAVDP S  KLSLRKSM KF+SDN  +DVL YSKYQP FL
Sbjct: 189  NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248

Query: 616  NRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALELMSPGENTNILKEMLK 675
            NRQLITLLSTLGV+D VFE+KQ EA+ QL+ ++TDP  A EA+ELM  GE TN +KE+L 
Sbjct: 249  NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308

Query: 676  CGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLDETGTLEYGQVFVQIS 735
            CGY+PD EPYLSM+LQTFR SKLLEL+TKSRI IP GRAMMGCLDET TL+YGQVF++ +
Sbjct: 309  CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368

Query: 736  SVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDVRVLNAVNVPLLYHMVDCVV 795
            S     ++D          D   + G V +AKNPCLHPGD+R+L+AV+VP+L+HM +CVV
Sbjct: 369  S----GVNDN---------DRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 428

Query: 796  FPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPAPPIQLDRDVTIEDVQ 855
            FPQ+G RPHPNECSGSDLDGDIYFV WD  LIPPR + PMDYTPAP   LD DVTIE+V+
Sbjct: 429  FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 488

Query: 856  EYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIAVDFPKTGVPAIIPSH 915
            EYF NY+VN+SLG+IANAH  FADKE  KA S+PCIELAKLFSIAVDFPKTGVPA+IP  
Sbjct: 489  EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 548

Query: 916  LNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFTRDVAMRCYDSDMETE 975
            L+VKE+PDFMEK D+ +YESK VIGKL+R +K   P   +I+ FTR+VA R YD+DM  +
Sbjct: 549  LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP---HIKHFTREVARRSYDTDMIVD 608

Query: 976  GFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSKSFTRRRDAEAINLAA 1035
            G+EDY+ +A+  K  YD+KLGNL+D+YGIKSE+EI SG I++M+K+FT++ DA+AI LA 
Sbjct: 609  GYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAV 668

Query: 1036 RSLRKEARTWFNTKESGPDS-GSDDLFAKASAWYHVTYHHSYWGSYNDGMKRDHYLSFPW 1095
            RSLRKEAR+ F+      +  G D   AKASAWYHVTYH  +WG YN+G +R H++SFPW
Sbjct: 669  RSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPW 728

Query: 1096 CVYHKLMQVKENNLRRREKASRLATL 1120
            C+Y KL+++K+     R+    L +L
Sbjct: 729  CIYEKLLRIKQRRKFVRKMQPELFSL 735

BLAST of CmoCh04G000890 vs. Swiss-Prot
Match: RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)

HSP 1 Score: 778.1 bits (2008), Expect = 1.3e-223
Identity = 456/1144 (39.86%), Postives = 671/1144 (58.65%), Query Frame = 1

Query: 4    TVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGG--SRVYAIVQFIGA---AQ 63
            TV IS  P    AD +  FLEL  G  TV+A+++ P  R     R +A VQF      ++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70

Query: 64   AELIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEK-FHVLW 123
            A+L+ S    +L + +  L+   A  DI+P+P      L+D+ L  G   S EK F  L 
Sbjct: 71   AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130

Query: 124  EGDVELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMK--CLLIQLYG 183
            + D        E R++ F +  +   Y+ ++ +E+I +     +   + +    L++L  
Sbjct: 131  KWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKY 190

Query: 184  APRIYKKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQL 243
             P+++K+V       F    + F KE  D  W+RT DF+ S S+G S+  CL++ NG  +
Sbjct: 191  GPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTM 250

Query: 244  PNFRRHFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVL-LPYEIIFKVNVLVQNG 303
             +      YY E       VDG  +F+ +  +VP++++    L  PYEI+F++N LV   
Sbjct: 251  LDIFSGLPYYREDTLSLTYVDG-KTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQ 310

Query: 304  CIA-GPSLDTGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSN 363
             I+   + D    +++    +    V   L+KL      CY+P  F+  Q +   K   +
Sbjct: 311  KISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKH 370

Query: 364  SPAIAL----DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEE 423
            SPA A     +  ++  +R  +TP K+Y  GPE+  +N V+++F+  + +F+RV+FV+E+
Sbjct: 371  SPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEED 430

Query: 424  WDKMRSTDLLPRMASS--IENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSL 483
            W K+ +  L         ++  +T+IY R+LS+L  GI +G K+F+FLAFS+SQLR NS+
Sbjct: 431  WSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSV 490

Query: 484  WMFASRPGLDAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEV 543
            WMFAS   + A  IREWMG FR I++ +K AAR+GQ F +S +TL V   + E IPDIEV
Sbjct: 491  WMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEV 550

Query: 544  QHGEVKYVFSDGIGKISSDFAKRVASKCVLAFTPSAFQIRYGGYKGVVAVDPRSSVKLSL 603
                  Y FSDGIGKIS  FAK+VA KC L+  PSAFQIRYGGYKGV+AVD  S  KLSL
Sbjct: 551  TTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSL 610

Query: 604  RKSMCKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAIL 663
            R SM KF+S+N  L+V  +++  PCFLNR++I LLSTLG++D +FE  Q+  L  L  +L
Sbjct: 611  RDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNML 670

Query: 664  TDPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIF 723
             D   A   L+ +S   + N+L +ML  GY P  EPYLSMML+   ES+L EL+++ RI 
Sbjct: 671  EDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRIL 730

Query: 724  IPNGRAMMGCLDETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKN 783
            +P GR ++GC+DE G LEYGQV+V+++  +    S   ++     E+  V++G V V KN
Sbjct: 731  VPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKN 790

Query: 784  PCLHPGDVRVLNAVNVPLLYH--MVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTEL 843
            PCLHPGD+RVL+A+          +DC++FPQKG RPHPNECSG DLDGD +FV WD ++
Sbjct: 791  PCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKI 850

Query: 844  IPPRQIPPMDYTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKAR 903
            IP    PPMDY  + P  +D DVT+E++ ++FV+YM++D+LG+I+ AH   AD++P KAR
Sbjct: 851  IPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKAR 910

Query: 904  SAPCIELAKLFSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAV 963
            S  C+ELA L S AVDF KTG PA +P  L  +EFPDF+E+ ++P+Y S++V GKL+RAV
Sbjct: 911  SQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAV 970

Query: 964  KGIAPNISYIRSFTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKS 1023
            K    +++  +          YD  +E  GFE ++E A  H+ +Y  KL +L+ YYG  +
Sbjct: 971  KS---SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAAN 1030

Query: 1024 ESEIFSGNI----MRMSKSFTRRRD-AEAINLAARSLRKEARTWFNTKESGPDSGSDDLF 1083
            E EI +G +    M +++   R  D  + I L+ + L KEA  WF        S  D+  
Sbjct: 1031 EEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFE------KSCEDEQQ 1090

Query: 1084 AK--ASAWYHVTYHHSYWGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRR---EKASR 1120
             K  ASAWY+VTY+       N   ++  +LSFPW V   L+ +K  N +R+   EK S 
Sbjct: 1091 KKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQSVEEKTSG 1133

BLAST of CmoCh04G000890 vs. Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 756.9 bits (1953), Expect = 3.1e-217
Identity = 440/1134 (38.80%), Postives = 648/1134 (57.14%), Query Frame = 1

Query: 4    TVHISGFPSHATADSVKSFLELRTGL-GTVYAIKVRPPKRGG-SRVYAIVQFIGAAQAEL 63
            ++ +S  P  A A  + +F +    + G  +A ++    RG  SR +  VQF  AA A  
Sbjct: 11   SLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAA 70

Query: 64   IISLANQ-RL-WYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVL--W 123
               LA+  RL  +  + L    + VD++P+            L  G +V+   F     W
Sbjct: 71   AAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAW 130

Query: 124  EGDVELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAP 183
            +G    V  G   R+++ +L H+   Y+ ++ +E++       L    M  +L+QL  AP
Sbjct: 131  DGVRAEVIPG--KRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTLD--GMGAILLQLNYAP 190

Query: 184  RIYKKVA-PSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLP 243
            RI+  ++ P+    F D  F+  KE     WVR  DFTP+ S G+ S+L LKL     + 
Sbjct: 191  RIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVS 250

Query: 244  NFRRHFAYYEEF-EDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGC 303
            +  +   +     E     +DG      S ++VP+V    +  +PYE++F++N L+  G 
Sbjct: 251  DILKSLPFSGNLGELTMNSMDG---VGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGK 310

Query: 304  IAGPSLDTGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQ-YKKYAKHP--- 363
            I    ++   ++ +    + V+      EK+  L+  CY P  F+ ++ Y     H    
Sbjct: 311  IVAKHVNADLFKALQ--ELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLL 370

Query: 364  SNSPAIALDDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWD 423
            SN      +  L+   RV ITP K++  GPE  V+N V++H S    +F+RV+FVDE+W 
Sbjct: 371  SNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWS 430

Query: 424  KMRSTDLLPRMASSIENG--KTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWM 483
            K+ S  +  R+     +   KT +Y RILS+LK G +IG K F+FLAFS+SQLR NS+WM
Sbjct: 431  KLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWM 490

Query: 484  FASRPGLDAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQH 543
            FAS   L+A  IR WMG F +I++ +K AAR+GQ F SS +T  V R + E+IPDIE+  
Sbjct: 491  FASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITT 550

Query: 544  GEVKYVFSDGIGKISSDFAKRVASKCVLAFT--PSAFQIRYGGYKGVVAVDPRSSVKLSL 603
               KY+FSDGIGKIS  FAKRVA    L  T  PSAFQIRYGGYKGV+A+DP SS+ LSL
Sbjct: 551  DGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSL 610

Query: 604  RKSMCKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAIL 663
            R SM KFES++  L++  +SK QPC++NR++I+LLSTLG++DE+F   Q + + + + +L
Sbjct: 611  RPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEML 670

Query: 664  TDPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIF 723
            T+   A   L  +   E    +K +L+ GY+P  EPYLSM+L+  +E++L ++RT+ +I 
Sbjct: 671  TNKEVALSVLGKLGGSETKTAVKMLLQ-GYEPSSEPYLSMILKAHQENRLTDIRTRCKIH 730

Query: 724  IPNGRAMMGCLDETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKN 783
            +P GR ++GCLDETG LEYGQV+++I+           ++  +       +VG V + KN
Sbjct: 731  VPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKN 790

Query: 784  PCLHPGDVRVLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP 843
            PCLHPGD+RVL A+  P L  MVDC+VFPQ+G RPHPNECSG DLDGD+YF+ WD +LIP
Sbjct: 791  PCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIP 850

Query: 844  PRQIPPMDYTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSA 903
             +   PMDYT   P  +D  VT+E++Q++FV+YM+NDSLG I+ AH   AD+ P KARS 
Sbjct: 851  EKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSP 910

Query: 904  PCIELAKLFSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKG 963
             C++LA L S+AVDF KTG PA +P  L  +E+PDFME+ ++P Y S  V+GKL+R+  G
Sbjct: 911  ECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMG 970

Query: 964  IAPNISYIRSFTRDVAM--RCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKS 1023
                     + +   A     YD D+E  G +++++ A  +  +Y+ KL  L++YY  + 
Sbjct: 971  HMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAEL 1030

Query: 1024 ESEIFSGNIMRMSKSFTRRRD-------AEAINLAARSLRKEARTWFNTKESGPDSGSDD 1083
            E EI +GNI   +K    +RD        + I  A  +L +EAR W  +         +D
Sbjct: 1031 EDEILTGNI--RNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRK-----EED 1090

Query: 1084 LFAKASAWYHVTYHHSYWGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREK 1113
                ASAWY VTYH        D  +   + SFPW     L+ +K ++  RR +
Sbjct: 1091 ASRMASAWYRVTYH-------PDRRRGKRFWSFPWIACDNLLAIKASSQLRRRR 1120

BLAST of CmoCh04G000890 vs. Swiss-Prot
Match: SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1)

HSP 1 Score: 582.0 bits (1499), Expect = 1.4e-164
Identity = 377/999 (37.74%), Postives = 547/999 (54.75%), Query Frame = 1

Query: 143  EYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIYKKVAPSSGQIFDDPL-FNFFKE 202
            + + +    ++ +++L+RL       LL++L  AP ++ + A      F +P+ F+   +
Sbjct: 214  DVKLEFPVRDVLEVRLYRLDCS----LLLRLAAAPLVHYRTADDD---FHEPVPFDLLDD 273

Query: 203  VPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRRHFAYYEEFEDEFKLVDGG--- 262
              DD W+RT D TPS ++G+     +   + R  P   R   Y  E         GG   
Sbjct: 274  --DDPWIRTTDITPSGAIGRCGVYRISF-SARFWPKMDRALDYMRERRVAIVDCGGGWGP 333

Query: 263  -NSFSCSDDLV---PVVDS----RPNVLLPYEIIFKVNVLVQNGCIAGPSLDTGFYRLVD 322
                +  D+L    P+ D     +    L + ++F VN LV  G I    L   F+ L+ 
Sbjct: 334  RRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLG 393

Query: 323  PSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIALDDGLVYVRRVQ 382
             S   V     AL   +  K   ++    L +   + A++P    +   DD    VRR+ 
Sbjct: 394  RSEENVNVA--ALRDFWGDKFPVFDACGRLKKALNRVARNPKLLCSKVGDDH-AEVRRLV 453

Query: 383  ITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDL-------LPRMA 442
            ITP + Y   PEV  SNRVLRH+    D FLRV+F+DE    + +  L       +  + 
Sbjct: 454  ITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLM 513

Query: 443  SSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAAVIRE 502
            S+    KT +Y+R+  +L  G  +  +K+ FLAFSS+QLR+ S W FA         IR+
Sbjct: 514  SNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRK 573

Query: 503  WMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSDGIGKI 562
            WMG F   KN AK+AAR+GQ F S+  T+++   E +   D +V H E  Y+FSDGIGKI
Sbjct: 574  WMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFD-DVVHNE--YIFSDGIGKI 633

Query: 563  SSDFAKRVASKCVLAFTP-SAFQIRYGGYKGVVAV--DPRSSVKLSLRKSMCKFESDNTK 622
            + D A  VA +  L   P SA+QIR+ G+KGV+AV        +L LR SM KFES++  
Sbjct: 634  TPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLV 693

Query: 623  LDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALELM 682
            L+V+ ++K+QP FLNRQ+I LLS+L V D +F + Q   L  L+ IL+D   A E L   
Sbjct: 694  LEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTT- 753

Query: 683  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLDE 742
            S  ++ N    ML  G++P  EP+L  ML   R ++L +L  K+RIF+P GR +MGCLDE
Sbjct: 754  SCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDE 813

Query: 743  TGTLEYGQVFVQ--ISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDVRVL 802
             G LE GQ F++  + S+    +   S F  S  ++  VI+G V +AKNPCLHPGDVR+L
Sbjct: 814  LGVLEQGQCFIRATVPSLNSYFVKHGSRFS-STDKNTEVILGTVVIAKNPCLHPGDVRIL 873

Query: 803  NAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPP--RQIPPMDY 862
             AV+VP L+H+VDC+VFPQKG RPH NE SGSDLDGD+YFV WD +LIPP  +   PMDY
Sbjct: 874  EAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDY 933

Query: 863  TPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLF 922
            +P    QL R V+  D+ ++F+  M++++LG I NAH   AD   + A    CI LA+L 
Sbjct: 934  SPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELA 993

Query: 923  SIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIR 982
            + AVDFPKTG  AI+P HL  K +PDFM K D  SY+S+ ++G+L+R+++  A N   + 
Sbjct: 994  ATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQE-ASNGDVVS 1053

Query: 983  SFTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMR 1042
                      YD D+E  G  D++  A   K  YD +L  LL  Y +++E+E+ +G+I  
Sbjct: 1054 QEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITF 1113

Query: 1043 MSKSFTRRRD--AEAINLAARSLRKEARTWFNTKESGPDSGSDD-----LFAKASAWYHV 1102
            + K+ ++++    + +  A  +LRKE ++ F +  S      DD        KASAWY V
Sbjct: 1114 LVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQV 1173

Query: 1103 TYHHSYWGSYN-----DGMKRDHYLSFPWCVYHKLMQVK 1104
            TYH  +          DG +    LSF W     L ++K
Sbjct: 1174 TYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIK 1192

BLAST of CmoCh04G000890 vs. TrEMBL
Match: A0A0S1YD00_CUCME (RNA-dependent RNA polymerase 1a OS=Cucumis melo GN=RDR1a PE=2 SV=1)

HSP 1 Score: 1922.9 bits (4980), Expect = 0.0e+00
Identity = 943/1131 (83.38%), Postives = 1024/1131 (90.54%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            MGKT+HISGFPSH TAD+VK+FLE  TG GTVYAIKVRPPKRGG R+YAIVQF  A QAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
            LI+SLANQRLWYGSSYLKAR+ +VDIVPKP+TY++TL+DL LCFGCQVSSEKF VLWEG+
Sbjct: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
            V+LVTFG+ MRKMNFHL +N VEYR +LSYENIWQIQLH  Q QSMK LLIQLYGAPRIY
Sbjct: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            KKVAPSSGQIFD+P+ NFF EVPDDQWVRT DFT S S+GQSSSLCLKLPNG +LP F++
Sbjct: 181  KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300
            +FAYYEEFE EF+L+D G SFS   DL P+VDSRP+VL PYEIIFK+N LVQ+GCI    
Sbjct: 241  NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVL-PYEIIFKINALVQHGCIPWSL 300

Query: 301  LDTGFYRLVDPS-RIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360
            LDT FYRLV+    IR+E+VE+ALEKLFHLKEC Y+PS+FLTEQ+++Y++HP NSP I+L
Sbjct: 301  LDTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISL 360

Query: 361  DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420
            DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361  DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLL 420

Query: 421  PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480
            PRM+S  E+ KTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421  PRMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480

Query: 481  VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSDG 540
             IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSVA +EREIIPDIEVQHGEVKYVFSDG
Sbjct: 481  YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDG 540

Query: 541  IGKISSDFAKRVASKCVLAFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNT 600
            IGKISS FAK VA+KC     PSAFQIRYGGYKGVVAVDP S++KLSLRKSMCKFESDN 
Sbjct: 541  IGKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNI 600

Query: 601  KLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALEL 660
            KLDVLG+SKYQPCFLNRQLITLLSTLGV+DE+FEKKQSEA+EQLDAILTDPLKAQEALEL
Sbjct: 601  KLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660

Query: 661  MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLD 720
            MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFR SKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720

Query: 721  ETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDVRVLN 780
            ET TLEYGQVFVQIS  RHR++S++ AF+ SG E  LVI G VTVAKNPCLHPGDVRVL 
Sbjct: 721  ETMTLEYGQVFVQISGGRHRNLSESFAFN-SGQEHCLVIEGKVTVAKNPCLHPGDVRVLK 780

Query: 781  AVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPA 840
            AVNVP LYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPR+I PMDYTPA
Sbjct: 781  AVNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRRITPMDYTPA 840

Query: 841  PPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIA 900
             PI+LDRDVT ED+QEYFVNYMVNDSLGIIANAHTAFADKEPFKARS+PC+ELAK FSIA
Sbjct: 841  LPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIA 900

Query: 901  VDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFT 960
            VDFPKTGVPAIIPSHL VKEFPDFMEKPDRPSYESKNVIGKLFRAVK IAP +S+I+ FT
Sbjct: 901  VDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFT 960

Query: 961  RDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSK 1020
            RDVA RCYD DME EGFEDYVEDA YHK+ YD KLGNLLDYYGIKSE+EI SG+IMRMSK
Sbjct: 961  RDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSK 1020

Query: 1021 SFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWGSY 1080
            SFTRRRDAEAINLA RSLRKEARTWFN +E G DS SDDLFAKASAWY+VTYHHSYWG Y
Sbjct: 1021 SFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSYWGYY 1080

Query: 1081 NDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRVLNLDG 1131
            N+GMKRD+YLSFPWC+Y KLMQ+KENNLR+RE+A+RLAT DRF  VLNL G
Sbjct: 1081 NEGMKRDYYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGYVLNLGG 1128

BLAST of CmoCh04G000890 vs. TrEMBL
Match: E9NWK6_CUCSA (RNA-dependent RNA polymerase 1a OS=Cucumis sativus GN=RDR1a PE=2 SV=1)

HSP 1 Score: 1918.7 bits (4969), Expect = 0.0e+00
Identity = 938/1131 (82.94%), Postives = 1020/1131 (90.19%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            MGKT+HISGFPSH TAD+VK+FLE  TG GTVYAIKVRPPKRGG R+YAIVQF  A QAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
            LIISLANQRLWYGSSYLKARA +VDIVPKPRTY++TLE+L LCFGCQVS+EKF VLWEG+
Sbjct: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
            V+LVTFG+ MRKMNFHL +  VEYR +LSYE IWQIQLH  + QSMK LLIQL GAPRIY
Sbjct: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            KKVAP+SGQIFD+PL NFFKE  DDQWVRT DFT S S+GQSSSLCLKLPNGRQLP F++
Sbjct: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300
            +FAYYEEFE EF+L+D   +FS   DL P+VDSR +VL PY+I+FK+N LVQ GCI  P 
Sbjct: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVL-PYKILFKINALVQYGCIPWPL 300

Query: 301  LDTGFYRLVDPS-RIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360
            LD  FYRLV+     R+E+VE+ALEKLFHLKEC Y+PS+FLTEQY+KY++HP NSP I+L
Sbjct: 301  LDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISL 360

Query: 361  DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420
            DDGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361  DDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLL 420

Query: 421  PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480
            PRM+S  E+GKTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421  PRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480

Query: 481  VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSDG 540
             IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSVA +EREIIPDIEVQ GE+KYVFSDG
Sbjct: 481  YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDG 540

Query: 541  IGKISSDFAKRVASKCVLAFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNT 600
            IGKISS FAK VA+KC     PSAFQIRYGGYKGVVAVDP S++KLSLRKSMCKFESDNT
Sbjct: 541  IGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNT 600

Query: 601  KLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALEL 660
            KLDVLG+SKYQPCFLNRQLITL+STLGV+DE+FEKKQSEA+EQLDAILTDPLKAQEALEL
Sbjct: 601  KLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660

Query: 661  MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLD 720
            MSPGENTNILKEMLKCGY+PDVEPYLSMMLQTFR SKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720

Query: 721  ETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDVRVLN 780
            ET TLEYGQVFVQISS RHR++S++ AF+  G E HLVI GNVTVAKNPCLHPGDVRVL 
Sbjct: 721  ETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLK 780

Query: 781  AVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPA 840
            AVN+P LYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP RQIPPMDYTPA
Sbjct: 781  AVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPA 840

Query: 841  PPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIA 900
            PP +LDRDVT ED+QEYFVNYMVNDSLGIIANAHTAFADKE FKARS+PC+ELAKLFS+A
Sbjct: 841  PPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVA 900

Query: 901  VDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFT 960
            VDFPKTGVPAIIPSHL VKEFPDFMEKPDRPSYES  VIGKLFRAVK IAP +S+IRSFT
Sbjct: 901  VDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFT 960

Query: 961  RDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSK 1020
            RDVA RCYD DME EGFEDYVEDA YHK+ YDYKLGNLLDYYGIKSE+E+ SG+IMRMSK
Sbjct: 961  RDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSK 1020

Query: 1021 SFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWGSY 1080
            SFTRRRDAEAINLA RSLRKEARTWFN +E G DS SDDLFAKASAWY+VTYHHSYWG Y
Sbjct: 1021 SFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSYWGCY 1080

Query: 1081 NDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRVLNLDG 1131
            N+GMKRDHYLSFPWCVY KLMQ+KENNLRRRE+A+RLA+ DRF  VLNL G
Sbjct: 1081 NEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGG 1129

BLAST of CmoCh04G000890 vs. TrEMBL
Match: B9HJH7_POPTR (RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s13550g PE=4 SV=1)

HSP 1 Score: 1581.6 bits (4094), Expect = 0.0e+00
Identity = 776/1133 (68.49%), Postives = 918/1133 (81.02%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            M KTV +SGFPS  TA +V+ FLE  TG GTV A+K+R  + GG+R YAIVQF     AE
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
             IISLAN RLWYG SYL AR  D DI+P+PR+++HT+E +TL FG Q S EKF  +W G+
Sbjct: 61   QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
               V FG+ MRK++F L HN  EY+  L +ENIWQI+LHR + Q++K LLIQLYGAPRIY
Sbjct: 121  NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            ++  PSS  +F+DPL N+F++VPD+QWVRT DFTPS  +G SSSLCL+LPN  QLPNF  
Sbjct: 181  ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNE 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300
            +F YY+E E  F L + G +FS + DLVP+V     V LPY I+F+VN+LVQNGC+AG  
Sbjct: 241  NFFYYKENEGTFVL-ESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 300

Query: 301  LDTGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKY--AKHPSNSPAIA 360
            LD  FYRLVDP+R+ V  +E ALEKL+HLKECCYEPS +  EQYKKY  + +P  SP ++
Sbjct: 301  LDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 360

Query: 361  LDDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDL 420
            LD GLVYV +VQITPCKV+FCGPEVNVSNRVLR +  D+DNFLRVSFVDEE +K+ STD+
Sbjct: 361  LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDV 420

Query: 421  LPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDA 480
             PR +S  E  +T IY RILS L+NGI IGDKKF+FLAFSSSQLRENS WMFASR GL A
Sbjct: 421  SPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTA 480

Query: 481  AVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSD 540
            A IR WMG F  I+N A+YAARLGQSFGSSTETLSV+ HE EIIPDIEV  G  +Y+FSD
Sbjct: 481  ADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSD 540

Query: 541  GIGKISSDFAKRVASKC-VLAFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESD 600
            GIGKIS++FA++VA KC    FTPSAFQIRY GYKGVVAVDP SS KLSLR+SM K+ES+
Sbjct: 541  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 600

Query: 601  NTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEAL 660
            NTKLDVL +SKYQPCFLNRQLITLLSTLGV D  FE+KQ EA++QLDA+LTDPL+AQEAL
Sbjct: 601  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 660

Query: 661  ELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGC 720
            ELMSPGENTNILKEML CGY+PD EP+LSMMLQTFR SKLLELRTK+RIFIPNGR+MMGC
Sbjct: 661  ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 720

Query: 721  LDETGTLEYGQVFVQISSVRHRHISDTS-AFDMSGSEDHLVIVGNVTVAKNPCLHPGDVR 780
            LDET TLE+GQVFV+ S  R R++ D+S  F   G     +I G+V VAKNPCLHPGD+R
Sbjct: 721  LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 780

Query: 781  VLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDY 840
            +L AV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP +QI PMDY
Sbjct: 781  ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 840

Query: 841  TPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLF 900
            TP PP+QLD DVTIE+V+EYF NY+VNDSLG+IANAHTA ADKE  KA S PC+ELA+ F
Sbjct: 841  TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 900

Query: 901  SIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIR 960
            SIAVDFPKTGVPA IPS+L  +E+PDFMEKPD+PSYES+NVIGKLFR VK IAP  S IR
Sbjct: 901  SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 960

Query: 961  SFTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMR 1020
            SFT DVA +CYD DME +GFEDY++DA Y+K+ YDYKLGNL++YYGIK+E+E+ SG+ M+
Sbjct: 961  SFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMK 1020

Query: 1021 MSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYW 1080
            MSKSFT++RDAEAI +A RSL+KEAR+WFN K SG DS +DD+ AKASAWYHVTYHH+YW
Sbjct: 1021 MSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYW 1080

Query: 1081 GSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDR-FSRVLNL 1129
            G YN+GM RDH+LSFPWCVY KL+Q+K  N  R  ++  L +++R FSR L+L
Sbjct: 1081 GCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132

BLAST of CmoCh04G000890 vs. TrEMBL
Match: A0A061EGF4_THECC (RNA-dependent RNA polymerase 1 isoform 1 OS=Theobroma cacao GN=TCM_011292 PE=4 SV=1)

HSP 1 Score: 1545.8 bits (4001), Expect = 0.0e+00
Identity = 775/1132 (68.46%), Postives = 914/1132 (80.74%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            MGKT+ +S FPS+  A+ VK+FLEL TG  TVYA+K+R  K GG R YAIVQF  +  AE
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG-RAYAIVQFTKSTDAE 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
            LII L NQRL+YGSSYLKAR  + DIVPKPRT++HT+E +TL FGCQVS+EKF+VLWE  
Sbjct: 61   LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEV 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
               V FG+ MRK+ F L H+ VEYR  L YENIWQI+LHR ++Q+ K LLIQL+GAPRIY
Sbjct: 121  DVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIY 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            +K   SSG +F++PL N+F +VPDDQWVRT DFT S+ +GQSS LCL+LP   QLPNFR 
Sbjct: 181  EKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRE 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300
            +FAYY+E E +F +++ G+S+S + +LVP+V     + LPYEI+FK+N+LVQNGCI GP+
Sbjct: 241  NFAYYKESEGKF-VLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPA 300

Query: 301  LDTGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKY--AKHPSNSPAIA 360
            LD  FYRLV+P RI   Y+++ALEKL++LKECC+EPS +L EQYK Y  +K    SP I+
Sbjct: 301  LDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVIS 360

Query: 361  LDDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDL 420
            LDDGLV VRRVQITP +VYFCGPE+NVSNRVLRHF  D+DNFLR++FVDEE +K+ STDL
Sbjct: 361  LDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDL 420

Query: 421  LPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDA 480
            L R      N  T+IY RILS LKNGI IGDK+F+FLAFSSSQLRENS WMFASR GL A
Sbjct: 421  LTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTA 480

Query: 481  AVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSD 540
            A IR WMG+F  I+N AKYAARLGQSF SSTETLSVA+ E EII D+E++   + YVFSD
Sbjct: 481  ADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSD 540

Query: 541  GIGKISSDFAKRVASKCVL-AFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESD 600
            GIGKIS+ FAK+VA+KC L   TPSAFQIR GG+KGVVAVDP SS KLSLR SM K+ES+
Sbjct: 541  GIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESE 600

Query: 601  NTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEAL 660
            NTKLDVL +SKYQPCFLNRQLITLLSTLGV D  FE+KQ E ++QL+AILTDPLKAQEAL
Sbjct: 601  NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEAL 660

Query: 661  ELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGC 720
            ELMSPGENTNILKEML CGY+PD EP+LSMMLQTFR SKLLELRTKSRIF+ NGR+MMGC
Sbjct: 661  ELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGC 720

Query: 721  LDETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDVRV 780
            LDET TL+YGQVFVQ+S  R              SE   ++ G V VAKNPCLHPGDVRV
Sbjct: 721  LDETRTLDYGQVFVQVSGSR--------------SEQRFIVQGKVVVAKNPCLHPGDVRV 780

Query: 781  LNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYT 840
            L AVNVP L+HMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD ELIP +QIPPMDY+
Sbjct: 781  LTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYS 840

Query: 841  PAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFS 900
            PAP   L+ +VTIE+V+EYF NY+VNDSLGIIANAHT FAD+EP KA S+ C  LAKLFS
Sbjct: 841  PAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFS 900

Query: 901  IAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRS 960
            IAVDFPKTGVPA IP  L VKE+PDFMEKPD+P+Y+S NVIGKLFR VK +APN  +IRS
Sbjct: 901  IAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRS 960

Query: 961  FTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRM 1020
             TR+   R YD DME +G+EDYV+DA YHK+ YDYKLGNL++YYGIK+E+EI SG IM+M
Sbjct: 961  LTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKM 1020

Query: 1021 SKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWG 1080
            S+SFT++RDAEAI +A RSLRKEAR+WFN K +G DS +DDL+AKASAWYHVTYH SYWG
Sbjct: 1021 SRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYWG 1080

Query: 1081 SYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDR-FSRVLNL 1129
             YN+GM R+H+LSFPWCVY KL+ +K+    RR   SRL++L+  F+R L L
Sbjct: 1081 LYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRN--SRLSSLESLFARGLRL 1108

BLAST of CmoCh04G000890 vs. TrEMBL
Match: W9RFK1_9ROSA (RNA-dependent RNA polymerase 1 OS=Morus notabilis GN=L484_006779 PE=4 SV=1)

HSP 1 Score: 1537.3 bits (3979), Expect = 0.0e+00
Identity = 763/1134 (67.28%), Postives = 911/1134 (80.34%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            MGKT+ +SGFPSH +A+SVK FLE  TG GTVYAIK+RP K GGSR YAIVQF+    AE
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAE 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
            LII LAN RLWYG SYL AR  + DIVPKPR  +++L+++TL FGCQ+S EKF  LW   
Sbjct: 61   LIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRVG 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
               V FG+ +R++NF+L +  VEYR QL YEN+WQI+LHR + Q+ K LLIQL GAPR+Y
Sbjct: 121  NVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRVY 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            +K    S  I ++PLFN+FK+ PDDQWVR  DFT S  +G SS+L L+LP G  LP+ R 
Sbjct: 181  EKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDLRE 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300
            +F YY+E E+ F +++ G+SFS + DLVP+V     + LP+E +FK+N+L+QNGC++GP+
Sbjct: 241  NFVYYKESEERF-ILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPT 300

Query: 301  LDTGFYRLVDPSRIR-VEYVENALEKLFHLKECCYEPSSFLTEQYKKY--AKHPSNSPAI 360
            LD  FYRLVDP RIR V+ +  ALEKLF+LKEC YEP+++L EQY+KY  A  P   PAI
Sbjct: 301  LDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAI 360

Query: 361  ALDDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTD 420
            ALD GLVYVRRVQ+TP KVYFCGPE+NVSNRVLR +   +D FLRVSFVDEE +K+ STD
Sbjct: 361  ALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTD 420

Query: 421  LLPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLD 480
            L PR +++ E+ +T IYRRILSVL+NGI IGD+KF+FLAFSSSQLR+NSLWMFA+  G  
Sbjct: 421  LSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHS 480

Query: 481  AAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFS 540
            A  IR+W+GDFR I+N AKYAARLGQSFGSSTETL+V   E E+I DIE++ G VKYVFS
Sbjct: 481  ADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVFS 540

Query: 541  DGIGKISSDFAKRVASKCVLA-FTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFES 600
            DGIGKISS FAKRVA KC L    PSAFQIRY GYKGVVAVDP SS KLSLRKSM K+ES
Sbjct: 541  DGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYES 600

Query: 601  DNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEA 660
            +  KLDVL YSK Q C+LNRQLITLLSTLGV D VFEKKQ EA++QL+AIL DPL+A+EA
Sbjct: 601  ELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAREA 660

Query: 661  LELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMG 720
            L+LMS GE TNILKE+L CGY+P+ EP+LSMMLQ FR SKL ELRTK+RI IP+GRAMMG
Sbjct: 661  LDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMMG 720

Query: 721  CLDETGTLEYGQVFVQISSVRHR-HISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDV 780
            CLDE  TLEYG+VFVQ S + HR    D+     +GS  + ++VG V VAKNPCLHPGDV
Sbjct: 721  CLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPCLHPGDV 780

Query: 781  RVLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMD 840
            RVL AVNVP L+HMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD ELIP +Q  PMD
Sbjct: 781  RVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPMD 840

Query: 841  YTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKL 900
            Y+PAP  +LD DV IE+VQEYF NY+VNDSLGIIANAHTAFADKEP KA S  CIELA+L
Sbjct: 841  YSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELARL 900

Query: 901  FSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYI 960
            FSIAVDFPKTGVPA+IP  L VKE+PDFMEK ++P+YES+NVIGKLFR VK IAPN+  +
Sbjct: 901  FSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGSL 960

Query: 961  RSFTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIM 1020
              FT++VA R YD DME +GFEDY++DA Y+K+ YDYKLGNLLDYYGIKSE+EI  G+IM
Sbjct: 961  HFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSIM 1020

Query: 1021 RMSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSY 1080
            RMSKSFT+RRDAE+IN+A R+LRKEARTWFN K S  DS +DD++AKASAWY+VTYHHSY
Sbjct: 1021 RMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHSY 1080

Query: 1081 WGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDR-FSRVLNL 1129
            WG YN+GM RDHYLSFPWCVY KL+Q+K +    R ++ ++++L+R F R L+L
Sbjct: 1081 WGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVR-RSLQMSSLERAFDRRLHL 1132

BLAST of CmoCh04G000890 vs. TAIR10
Match: AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)

HSP 1 Score: 1407.1 bits (3641), Expect = 0.0e+00
Identity = 709/1129 (62.80%), Postives = 853/1129 (75.55%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            MGKT+ + GFP+  +A+ VK FLE  TG GTVYAIKVR PK+GG RVYAIVQF       
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
            LII+ A +RL+YG SYLKA   + DIVPKPR  +HT+  L + FGCQVS++KF  LW   
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
               V+FG+ MRK++F       +YR +LSYENIWQI LH  Q +S K L+IQ+ GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            +K       +F   + +F+ +  D+QW+RT DFT S+ +GQS++ CL+LP    +P+FR 
Sbjct: 181  EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCS-DDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGP 300
            +FA Y E      L++ G+S+S + + LVPVVD  P   LP+EI+FK+N LVQN C++GP
Sbjct: 241  NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300

Query: 301  SLDTGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKY---AKHPSNSPA 360
            +LD  FYRL++  +     +++ LEKLFHL ECCYEP+ +L ++YKK+    K P  SP 
Sbjct: 301  ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPL-SPT 360

Query: 361  IALDDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRST 420
            I+LDDGLVY+ RVQ+TP +VYF GPEVNVSNRVLRH+S+ ++NFLRVSFVDE+ +K+RS 
Sbjct: 361  ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 420

Query: 421  DLLPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGL 480
            DL PR ++     +T +Y RI SVL++GI IGDKKF+FLAFSSSQLRENS WMFA    +
Sbjct: 421  DLSPRSSTQ---RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRI 480

Query: 481  DAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVF 540
             AA IR WMGDF HI+N AKYAARLGQSF SS ETL+V   E E+IPD+E+     +YVF
Sbjct: 481  TAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 540

Query: 541  SDGIGKISSDFAKRVASKCVLA-FTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFE 600
            SDGIGKIS++FA++VA KC L  F+PSAFQIRYGGYKGVVAVDP SS KLSLRKSM KFE
Sbjct: 541  SDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 600

Query: 601  SDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQE 660
            S+NTKLDVL +SKYQPC++NRQLITLLSTLGV D VFEKKQ E +++LDAILT PL+A E
Sbjct: 601  SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 660

Query: 661  ALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMM 720
            AL LM+PGENTNILK ++ CGYKPD EP+LSMMLQ FR SKLLELRTK+RIFI  GR+MM
Sbjct: 661  ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 720

Query: 721  GCLDETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDV 780
            GCLDET TLEYGQV VQ S             D        +I G V VAKNPCLHPGDV
Sbjct: 721  GCLDETRTLEYGQVVVQYS-------------DPMRPGRRFIITGPVVVAKNPCLHPGDV 780

Query: 781  RVLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMD 840
            RVL AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD EL+PPR   PMD
Sbjct: 781  RVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMD 840

Query: 841  YTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKL 900
            YTP P   LD DVTIE+V+EYF NY+VNDSLGIIANAHTAFADKEP KA S PCIELAK 
Sbjct: 841  YTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKK 900

Query: 901  FSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYI 960
            FS AVDFPKTGV A+IP HL VKE+PDFMEKPD+P+YESKNVIGKLFR VK  AP +  I
Sbjct: 901  FSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISI 960

Query: 961  RSFTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIM 1020
            +SFT DVA + YD DME +GFE+YV++A Y K  YD+KLGNL+DYYGIK+E+EI SG IM
Sbjct: 961  KSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM 1020

Query: 1021 RMSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSY 1080
            RMSKSFT+RRDAE+I  A R+LRKE  + FN  E       ++  AKASAWYHVTYH SY
Sbjct: 1021 RMSKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EENESAKASAWYHVTYHSSY 1080

Query: 1081 WGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSR 1125
            WG YN+G+ RDH+LSF WCVY KL+++K+ NL RR++   L  LD   R
Sbjct: 1081 WGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLERLDHVLR 1105

BLAST of CmoCh04G000890 vs. TAIR10
Match: AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)

HSP 1 Score: 778.1 bits (2008), Expect = 7.4e-225
Identity = 456/1144 (39.86%), Postives = 671/1144 (58.65%), Query Frame = 1

Query: 4    TVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGG--SRVYAIVQFIGA---AQ 63
            TV IS  P    AD +  FLEL  G  TV+A+++ P  R     R +A VQF      ++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70

Query: 64   AELIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEK-FHVLW 123
            A+L+ S    +L + +  L+   A  DI+P+P      L+D+ L  G   S EK F  L 
Sbjct: 71   AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130

Query: 124  EGDVELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMK--CLLIQLYG 183
            + D        E R++ F +  +   Y+ ++ +E+I +     +   + +    L++L  
Sbjct: 131  KWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKY 190

Query: 184  APRIYKKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQL 243
             P+++K+V       F    + F KE  D  W+RT DF+ S S+G S+  CL++ NG  +
Sbjct: 191  GPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTM 250

Query: 244  PNFRRHFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVL-LPYEIIFKVNVLVQNG 303
             +      YY E       VDG  +F+ +  +VP++++    L  PYEI+F++N LV   
Sbjct: 251  LDIFSGLPYYREDTLSLTYVDG-KTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQ 310

Query: 304  CIA-GPSLDTGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSN 363
             I+   + D    +++    +    V   L+KL      CY+P  F+  Q +   K   +
Sbjct: 311  KISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKH 370

Query: 364  SPAIAL----DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEE 423
            SPA A     +  ++  +R  +TP K+Y  GPE+  +N V+++F+  + +F+RV+FV+E+
Sbjct: 371  SPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEED 430

Query: 424  WDKMRSTDLLPRMASS--IENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSL 483
            W K+ +  L         ++  +T+IY R+LS+L  GI +G K+F+FLAFS+SQLR NS+
Sbjct: 431  WSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSV 490

Query: 484  WMFASRPGLDAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEV 543
            WMFAS   + A  IREWMG FR I++ +K AAR+GQ F +S +TL V   + E IPDIEV
Sbjct: 491  WMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEV 550

Query: 544  QHGEVKYVFSDGIGKISSDFAKRVASKCVLAFTPSAFQIRYGGYKGVVAVDPRSSVKLSL 603
                  Y FSDGIGKIS  FAK+VA KC L+  PSAFQIRYGGYKGV+AVD  S  KLSL
Sbjct: 551  TTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSL 610

Query: 604  RKSMCKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAIL 663
            R SM KF+S+N  L+V  +++  PCFLNR++I LLSTLG++D +FE  Q+  L  L  +L
Sbjct: 611  RDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNML 670

Query: 664  TDPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIF 723
             D   A   L+ +S   + N+L +ML  GY P  EPYLSMML+   ES+L EL+++ RI 
Sbjct: 671  EDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRIL 730

Query: 724  IPNGRAMMGCLDETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKN 783
            +P GR ++GC+DE G LEYGQV+V+++  +    S   ++     E+  V++G V V KN
Sbjct: 731  VPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKN 790

Query: 784  PCLHPGDVRVLNAVNVPLLYH--MVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTEL 843
            PCLHPGD+RVL+A+          +DC++FPQKG RPHPNECSG DLDGD +FV WD ++
Sbjct: 791  PCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKI 850

Query: 844  IPPRQIPPMDYTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKAR 903
            IP    PPMDY  + P  +D DVT+E++ ++FV+YM++D+LG+I+ AH   AD++P KAR
Sbjct: 851  IPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKAR 910

Query: 904  SAPCIELAKLFSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAV 963
            S  C+ELA L S AVDF KTG PA +P  L  +EFPDF+E+ ++P+Y S++V GKL+RAV
Sbjct: 911  SQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAV 970

Query: 964  KGIAPNISYIRSFTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKS 1023
            K    +++  +          YD  +E  GFE ++E A  H+ +Y  KL +L+ YYG  +
Sbjct: 971  KS---SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAAN 1030

Query: 1024 ESEIFSGNI----MRMSKSFTRRRD-AEAINLAARSLRKEARTWFNTKESGPDSGSDDLF 1083
            E EI +G +    M +++   R  D  + I L+ + L KEA  WF        S  D+  
Sbjct: 1031 EEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFE------KSCEDEQQ 1090

Query: 1084 AK--ASAWYHVTYHHSYWGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRR---EKASR 1120
             K  ASAWY+VTY+       N   ++  +LSFPW V   L+ +K  N +R+   EK S 
Sbjct: 1091 KKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQSVEEKTSG 1133

BLAST of CmoCh04G000890 vs. TAIR10
Match: AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)

HSP 1 Score: 576.6 bits (1485), Expect = 3.3e-164
Identity = 383/1024 (37.40%), Postives = 552/1024 (53.91%), Query Frame = 1

Query: 143  EYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIYKKVAPSS------GQIFDDPLF 202
            +Y+ +L   +I  ++ ++  H  +  L++QL  +PR++ + A         G + DD   
Sbjct: 192  DYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVWYRTADDDIYDTVPGDLLDD--- 251

Query: 203  NFFKEVPDDQWVRTADFTPSNSVGQSSS--LCLKLPNGRQLPNFRRHFAYYEEFEDEFKL 262
                   DD W+RT DFT   ++G+  S  + +      +L     +F      E+  + 
Sbjct: 252  -------DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRW 311

Query: 263  VDGGNSFSCSDDLVPVVDS----RPNVLLPYEIIFKVNVLVQNGCIAGPSLDTGFYRLVD 322
                 +  C  +  PV D          + +EI+F VN ++  G      L   F+ L  
Sbjct: 312  PPRIRNEPCFGE--PVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDL-- 371

Query: 323  PSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYA-------KHPSNSPAIALDDGL 382
               +R +  +  +  L HL  C Y+   F  + YK+         K+P    +    + +
Sbjct: 372  ---LRNQPKDVNIASLKHL--CTYKRPVF--DAYKRLKLVQEWIQKNPKLLGSHEQSEDI 431

Query: 383  VYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDL----- 442
              +RR+ ITP + Y   PEV +SNRVLR +    + FLRV+F+DE    + S  L     
Sbjct: 432  SEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVA 491

Query: 443  --LPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGL 502
              +  + SS  + KT +++R+ S+L +G  +  +K+ FLAFS++QLR+ S W FA     
Sbjct: 492  PIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKT 551

Query: 503  DAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREI-IPDIEVQHGEVKYV 562
              + I+ WMG F+  KN AK AAR+G  F S+  T+ V  HE +  +PDIE ++G   YV
Sbjct: 552  RVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE-RNG---YV 611

Query: 563  FSDGIGKISSDFAKRVASKCVLA--FTPSAFQIRYGGYKGVVAVDPRSS--VKLSLRKSM 622
            FSDGIG I+ D A  V  K  L   ++P A+QIRY G+KGVVA  P  S  ++L+LR SM
Sbjct: 612  FSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSM 671

Query: 623  CKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPL 682
             KF S +T L++  ++++QP FLNRQ+ITLLS LGV DE+F   Q   L +L+ IL D  
Sbjct: 672  KKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTD 731

Query: 683  KAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNG 742
             A E L   S  E  N    ML  G+KP  EP+L  ML + R ++L  LR KSRIF+ +G
Sbjct: 732  VAFEVLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSG 791

Query: 743  RAMMGCLDETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSE------DHLVIVGNVTVA 802
            R +MGCLDE G LE+GQ F+Q+S       S  + F   GS       D  V+ G V +A
Sbjct: 792  RWLMGCLDEAGILEHGQCFIQVSKP-----SIENCFSKHGSRFKETKTDLEVVKGYVAIA 851

Query: 803  KNPCLHPGDVRVLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTEL 862
            KNPCLHPGDVR+L AV+VP L+HM DC++FPQKG RPH NE SGSDLDGD+YFV WD +L
Sbjct: 852  KNPCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKL 911

Query: 863  IPP--RQIPPMDYTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFK 922
            IPP  +  P M Y  A    L R V  +D+ ++F   + N+ LG I NAH   AD+  + 
Sbjct: 912  IPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYG 971

Query: 923  ARSAPCIELAKLFSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFR 982
            A    C+ LA+L + AVDFPKTG    +P HL  K +PDFM K D  +Y+S  ++G+L+R
Sbjct: 972  AMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYR 1031

Query: 983  AVKGIAPNISYIRS-FTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYG 1042
             VK +    +   S  + D +   YD+ +E  GFED + +A  HK +YD +L  LL  Y 
Sbjct: 1032 RVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYK 1091

Query: 1043 IKSESEIFSGNIMRMSKSFTRRRD--AEAINLAARSLRKEARTWFNTKESGPDSGSDD-- 1102
            ++ E EI +G+I  M K  ++++    E +  +  SL+KE R  F       ++ S++  
Sbjct: 1092 VQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEK 1151

Query: 1103 ---LFAKASAWYHVTYHHSYWG---SYNDGMKRDH--YLSFPWCVYHKLMQVKENNLRRR 1115
                  KASAWYHVTYH  +        D  +  H   LSF W     L ++K   +R R
Sbjct: 1152 NILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIK---IRSR 1178

BLAST of CmoCh04G000890 vs. TAIR10
Match: AT2G19930.1 (AT2G19930.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 118.6 bits (296), Expect = 2.4e-26
Identity = 161/640 (25.16%), Postives = 256/640 (40.00%), Query Frame = 1

Query: 398 DNFLRVSFVDEEWDKMRSTDLLPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAF 457
           DN L V F D +  K  ST  +            D Y     + KNGI IG ++++F  F
Sbjct: 242 DNVLTVKFADVQ--KSSSTYSI------------DHYFTYKGIAKNGIMIGLRRYQFFVF 301

Query: 458 SSSQLRENSLWMFASRPGLDAAVIREWMGDFRHIKNP----------------------- 517
                 E    +   +  +    IR     F  ++NP                       
Sbjct: 302 KDGGKEEKKKDLSTKK--VKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPT 361

Query: 518 -AKYAARLGQSFGSSTETLSVARH--EREIIPDIEVQHGEVKYVF---------SDGIGK 577
            A Y AR      S T+TL V       + I DI     + K V          SDG G 
Sbjct: 362 LANYMARFSLIL-SKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGY 421

Query: 578 ISSDFAKRVA-----SKCVLAFT---------PSAFQIR--YGGY--KGVVAVDPR---- 637
           IS D A+         KC+ + +         P   Q R  Y GY  KG   ++ +    
Sbjct: 422 ISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPR 481

Query: 638 ------SSVKLSLRKSMCKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEK 697
                 S +K+S   S+  F + N    V   +  +   L++ L+ LLS  G+ +E F  
Sbjct: 482 TVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLD 541

Query: 698 KQSEALEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGY---KPDVEPYLSMMLQT 757
                LE+  +I  +   A  A       ++ N   +M+  G    +P ++ YLS++L+T
Sbjct: 542 ILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAA-QMILVGIPLDEPHLKNYLSILLKT 601

Query: 758 FRESKLLELRTKSRIFIPNGRAMMGCLDETGTLEYGQVFVQISSVRHRHISDTSAFDMSG 817
            +     +L+   ++ +     +MG +D TG L+  +V V + S +              
Sbjct: 602 EKN----DLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVILESGQ-------------- 661

Query: 818 SEDHLVIVGNVTVAKNPCLHPGDVRVLNAVNVPLLYHMVD----CVVFPQKGSRPHPNEC 877
                 I G V V +NP LH GD+ +L A  V  L   V      V FPQKG R   +E 
Sbjct: 662 ------ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEI 721

Query: 878 SGSDLDGDIYFVCWDTELI---PPRQIPPMDYTP-------APPIQLDRDVTIEDVQEYF 937
           +G D DGD+YF+  + EL+    P + P +  TP         P QL  +   E++ E F
Sbjct: 722 AGGDFDGDMYFISRNPELLENFKPSE-PWVSLTPPSKSNSGRAPSQLSPEELEEELFEMF 781

Query: 938 V--NYMVNDSLGIIANAHTAFADK---------EPFKARSAPCIELAKLFSIAVDFPKTG 947
           +   +  ++ +GI A++     D+         E         +EL  ++  A+D PK G
Sbjct: 782 LTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKG 835

BLAST of CmoCh04G000890 vs. TAIR10
Match: AT2G19920.1 (AT2G19920.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-24
Identity = 160/639 (25.04%), Postives = 259/639 (40.53%), Query Frame = 1

Query: 398 DNFLRVSFVDEEWDKMRSTDLLPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAF 457
           DN L V F           D LP+ ++  +N     Y +   + KNGI +G ++++F  F
Sbjct: 247 DNVLTVRF-----------DQLPKESTYCDNP----YSKYKEIAKNGIMVGLRRYQFFVF 306

Query: 458 S----SSQLRENS---LWMFASRPG------------LDAAVIREWMGDFRHIK---NPA 517
                + + + NS   +  +  R G            L    I E    F H+    +PA
Sbjct: 307 KDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPA 366

Query: 518 KYAARLGQSFGSSTETLSVARHEREIIP------------DIEVQHGEVKYVFSDGIGKI 577
            Y AR      S T+ L V   E  ++             D+  ++G+ + + SDG G I
Sbjct: 367 NYMARFSLIL-SKTKKLEVDMTEITVMQIDDIHCHDQSNNDVLDKNGKPR-IHSDGTGYI 426

Query: 578 SSDFAK---------------RVASKCVLAFTPSAFQIRY----GGYKGVVAVDPR---- 637
           S D A+                +   CV    P   QIR        KG+  ++      
Sbjct: 427 SEDLARMCPLNIFKGKSMRSNNIQGTCVQE-PPLLIQIRMFNDGSAVKGIFLLNKNLPPQ 486

Query: 638 ------SSVKLSLRKSMCKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEK 697
                 S +K+   K++  F + N+   V   +  +   L++ L+ LLS  GV ++ F  
Sbjct: 487 TVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLD 546

Query: 698 KQSEALEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRE 757
                LE+   I      A +A       ++ N L +M+  G   D EPYL   L     
Sbjct: 547 ILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-QMIMAGIPLD-EPYLKHYL----- 606

Query: 758 SKLLELRTKS----RIFIPNGRAMMGCLDETGTLEYGQVFVQISSVRHRHISDTSAFDMS 817
           SKLL+L        ++ I     +MG +D TG L+  +V                   ++
Sbjct: 607 SKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVS-----------------GLA 666

Query: 818 GSEDHLVIVGNVTVAKNPCLHPGDVRVLNAVNVPLLYHMVDC----VVFPQKGSRPHPNE 877
            S+D       V V +NP LH GD+ +L A  V  L   V      V FPQKG R   +E
Sbjct: 667 KSQD-------VLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDE 726

Query: 878 CSGSDLDGDIYFVCWDTELI-------PPRQIPPMD--YTPAPPIQLDRDVTIEDVQEYF 937
            +G D DGD+YF+  + +L+       P     P    YT   P +L  +   E++ + F
Sbjct: 727 IAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIF 786

Query: 938 V--NYMVNDSLGIIANAHTAFADK------EPFKARSAPCIELAKLFSI---AVDFPKTG 946
           +   +  +  +G  A++  A  D+      E  K ++    ++ KL  I   A+D PKTG
Sbjct: 787 LKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTG 834

BLAST of CmoCh04G000890 vs. NCBI nr
Match: gi|948561981|gb|ALM88236.1| (RNA-dependent RNA polymerase 1a [Cucumis melo])

HSP 1 Score: 1922.9 bits (4980), Expect = 0.0e+00
Identity = 943/1131 (83.38%), Postives = 1024/1131 (90.54%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            MGKT+HISGFPSH TAD+VK+FLE  TG GTVYAIKVRPPKRGG R+YAIVQF  A QAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
            LI+SLANQRLWYGSSYLKAR+ +VDIVPKP+TY++TL+DL LCFGCQVSSEKF VLWEG+
Sbjct: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
            V+LVTFG+ MRKMNFHL +N VEYR +LSYENIWQIQLH  Q QSMK LLIQLYGAPRIY
Sbjct: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            KKVAPSSGQIFD+P+ NFF EVPDDQWVRT DFT S S+GQSSSLCLKLPNG +LP F++
Sbjct: 181  KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300
            +FAYYEEFE EF+L+D G SFS   DL P+VDSRP+VL PYEIIFK+N LVQ+GCI    
Sbjct: 241  NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVL-PYEIIFKINALVQHGCIPWSL 300

Query: 301  LDTGFYRLVDPS-RIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360
            LDT FYRLV+    IR+E+VE+ALEKLFHLKEC Y+PS+FLTEQ+++Y++HP NSP I+L
Sbjct: 301  LDTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISL 360

Query: 361  DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420
            DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361  DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLL 420

Query: 421  PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480
            PRM+S  E+ KTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421  PRMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480

Query: 481  VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSDG 540
             IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSVA +EREIIPDIEVQHGEVKYVFSDG
Sbjct: 481  YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDG 540

Query: 541  IGKISSDFAKRVASKCVLAFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNT 600
            IGKISS FAK VA+KC     PSAFQIRYGGYKGVVAVDP S++KLSLRKSMCKFESDN 
Sbjct: 541  IGKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNI 600

Query: 601  KLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALEL 660
            KLDVLG+SKYQPCFLNRQLITLLSTLGV+DE+FEKKQSEA+EQLDAILTDPLKAQEALEL
Sbjct: 601  KLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660

Query: 661  MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLD 720
            MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFR SKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720

Query: 721  ETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDVRVLN 780
            ET TLEYGQVFVQIS  RHR++S++ AF+ SG E  LVI G VTVAKNPCLHPGDVRVL 
Sbjct: 721  ETMTLEYGQVFVQISGGRHRNLSESFAFN-SGQEHCLVIEGKVTVAKNPCLHPGDVRVLK 780

Query: 781  AVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPA 840
            AVNVP LYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPR+I PMDYTPA
Sbjct: 781  AVNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRRITPMDYTPA 840

Query: 841  PPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIA 900
             PI+LDRDVT ED+QEYFVNYMVNDSLGIIANAHTAFADKEPFKARS+PC+ELAK FSIA
Sbjct: 841  LPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIA 900

Query: 901  VDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFT 960
            VDFPKTGVPAIIPSHL VKEFPDFMEKPDRPSYESKNVIGKLFRAVK IAP +S+I+ FT
Sbjct: 901  VDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFT 960

Query: 961  RDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSK 1020
            RDVA RCYD DME EGFEDYVEDA YHK+ YD KLGNLLDYYGIKSE+EI SG+IMRMSK
Sbjct: 961  RDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSK 1020

Query: 1021 SFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWGSY 1080
            SFTRRRDAEAINLA RSLRKEARTWFN +E G DS SDDLFAKASAWY+VTYHHSYWG Y
Sbjct: 1021 SFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSYWGYY 1080

Query: 1081 NDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRVLNLDG 1131
            N+GMKRD+YLSFPWC+Y KLMQ+KENNLR+RE+A+RLAT DRF  VLNL G
Sbjct: 1081 NEGMKRDYYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGYVLNLGG 1128

BLAST of CmoCh04G000890 vs. NCBI nr
Match: gi|659130594|ref|XP_008465250.1| (PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo])

HSP 1 Score: 1922.9 bits (4980), Expect = 0.0e+00
Identity = 943/1132 (83.30%), Postives = 1022/1132 (90.28%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            MGKT+HISGFPSH TAD+VK+FLE  TG GTVYAIKVRPPKRGG R+YAIVQF  A QAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
            LI+SLANQRLWYGSSYLKAR+ +VDIVPKP+TY++ L+DL LCFGCQVSSEKF VLWEG+
Sbjct: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
            V+LVTFG+ MRKMNFHL +N VEYR +LSYENIWQIQLH  Q QSMK LLIQLYGAPRIY
Sbjct: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            KKVAPSSGQIFD+P+ NFF EVPDDQWVRT DFT S S+GQSSSLCLKLPNG +LP F++
Sbjct: 181  KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300
            +FAYYEEFE EF+L+D   SFS   DL P+VDSRP+VL PYEIIFK+N LVQ+GCI    
Sbjct: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVL-PYEIIFKINALVQHGCIPWSL 300

Query: 301  LDTGFYRLVDPS-RIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360
            LDT FYRLV+    IR+E+VE+ALEKLFHLKEC Y+PS+FLTEQ+++Y++HP NSP I+L
Sbjct: 301  LDTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISL 360

Query: 361  DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420
            DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361  DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLL 420

Query: 421  PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480
            PRM+S  E+ KTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421  PRMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480

Query: 481  VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSDG 540
             IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSVA +EREIIPDIEVQHGEVKYVFSDG
Sbjct: 481  YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDG 540

Query: 541  IGKISSDFAKRVASKCVLAFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNT 600
            IGKISS FAK VA+KC     PSAFQIRYGGYKGVVAVDP S++KLSLRKSMCKFESDN 
Sbjct: 541  IGKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNI 600

Query: 601  KLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALEL 660
            KLDVLG+SKYQPCFLNRQLITLLSTLGV+DE+FEKKQSEA+EQLDAILTDPLKAQEALEL
Sbjct: 601  KLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660

Query: 661  MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLD 720
            MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFR SKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720

Query: 721  ETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDVRVLN 780
            ET TLEYGQVFVQIS  RHR++S++ AF+ SG E  LVI G VTVAKNPCLHPGDVRVL 
Sbjct: 721  ETMTLEYGQVFVQISGGRHRNLSESFAFN-SGQEHCLVIEGKVTVAKNPCLHPGDVRVLK 780

Query: 781  AVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPA 840
            AVNVP LYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQI PMDYTPA
Sbjct: 781  AVNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYTPA 840

Query: 841  PPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIA 900
             PI+LDRDVT ED+QEYFVNYMVNDSLGIIANAHTAFADKEPFKARS+PC+ELAK FSIA
Sbjct: 841  LPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIA 900

Query: 901  VDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFT 960
            VDFPKTGVPAIIPSHL VKEFPDFMEKPDRPSYESKNVIGKLFRAVK IAP +S+I+ FT
Sbjct: 901  VDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFT 960

Query: 961  RDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSK 1020
            RDVA RCYD DME EGFEDY EDA YHK+ YD KLGNLLDYYGIKSE+EI SG+IMRMSK
Sbjct: 961  RDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSK 1020

Query: 1021 SFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWGSY 1080
            SFTRRRDAEAINLA RSLRKEARTWFN +E G DS SDDLFAKASAWY+VTYHHSYWG Y
Sbjct: 1021 SFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSYWGCY 1080

Query: 1081 NDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRVLNLDGR 1132
            N+GMKRDHYLSFPWC+Y KLMQ+KENNLR+RE+A+RLAT DRF  VLNL GR
Sbjct: 1081 NEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGGR 1129

BLAST of CmoCh04G000890 vs. NCBI nr
Match: gi|525507304|ref|NP_001267692.1| (RNA-dependent RNA polymerase 1-like [Cucumis sativus])

HSP 1 Score: 1918.7 bits (4969), Expect = 0.0e+00
Identity = 938/1131 (82.94%), Postives = 1020/1131 (90.19%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            MGKT+HISGFPSH TAD+VK+FLE  TG GTVYAIKVRPPKRGG R+YAIVQF  A QAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
            LIISLANQRLWYGSSYLKARA +VDIVPKPRTY++TLE+L LCFGCQVS+EKF VLWEG+
Sbjct: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
            V+LVTFG+ MRKMNFHL +  VEYR +LSYE IWQIQLH  + QSMK LLIQL GAPRIY
Sbjct: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            KKVAP+SGQIFD+PL NFFKE  DDQWVRT DFT S S+GQSSSLCLKLPNGRQLP F++
Sbjct: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300
            +FAYYEEFE EF+L+D   +FS   DL P+VDSR +VL PY+I+FK+N LVQ GCI  P 
Sbjct: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVL-PYKILFKINALVQYGCIPWPL 300

Query: 301  LDTGFYRLVDPS-RIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360
            LD  FYRLV+     R+E+VE+ALEKLFHLKEC Y+PS+FLTEQY+KY++HP NSP I+L
Sbjct: 301  LDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISL 360

Query: 361  DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420
            DDGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361  DDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLL 420

Query: 421  PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480
            PRM+S  E+GKTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421  PRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480

Query: 481  VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSDG 540
             IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSVA +EREIIPDIEVQ GE+KYVFSDG
Sbjct: 481  YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDG 540

Query: 541  IGKISSDFAKRVASKCVLAFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNT 600
            IGKISS FAK VA+KC     PSAFQIRYGGYKGVVAVDP S++KLSLRKSMCKFESDNT
Sbjct: 541  IGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNT 600

Query: 601  KLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALEL 660
            KLDVLG+SKYQPCFLNRQLITL+STLGV+DE+FEKKQSEA+EQLDAILTDPLKAQEALEL
Sbjct: 601  KLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660

Query: 661  MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLD 720
            MSPGENTNILKEMLKCGY+PDVEPYLSMMLQTFR SKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720

Query: 721  ETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDVRVLN 780
            ET TLEYGQVFVQISS RHR++S++ AF+  G E HLVI GNVTVAKNPCLHPGDVRVL 
Sbjct: 721  ETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLK 780

Query: 781  AVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPA 840
            AVN+P LYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP RQIPPMDYTPA
Sbjct: 781  AVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPA 840

Query: 841  PPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIA 900
            PP +LDRDVT ED+QEYFVNYMVNDSLGIIANAHTAFADKE FKARS+PC+ELAKLFS+A
Sbjct: 841  PPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVA 900

Query: 901  VDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFT 960
            VDFPKTGVPAIIPSHL VKEFPDFMEKPDRPSYES  VIGKLFRAVK IAP +S+IRSFT
Sbjct: 901  VDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFT 960

Query: 961  RDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSK 1020
            RDVA RCYD DME EGFEDYVEDA YHK+ YDYKLGNLLDYYGIKSE+E+ SG+IMRMSK
Sbjct: 961  RDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSK 1020

Query: 1021 SFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWGSY 1080
            SFTRRRDAEAINLA RSLRKEARTWFN +E G DS SDDLFAKASAWY+VTYHHSYWG Y
Sbjct: 1021 SFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSYWGCY 1080

Query: 1081 NDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRVLNLDG 1131
            N+GMKRDHYLSFPWCVY KLMQ+KENNLRRRE+A+RLA+ DRF  VLNL G
Sbjct: 1081 NEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGG 1129

BLAST of CmoCh04G000890 vs. NCBI nr
Match: gi|1009154798|ref|XP_015895367.1| (PREDICTED: RNA-dependent RNA polymerase 1 [Ziziphus jujuba])

HSP 1 Score: 1627.8 bits (4214), Expect = 0.0e+00
Identity = 795/1132 (70.23%), Postives = 934/1132 (82.51%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            MG+T+ +SGFPS  +A+ VK FLE  TG GTVYAIK+R  K GG R YAIVQF     AE
Sbjct: 1    MGRTIQVSGFPSSVSAELVKKFLENLTGEGTVYAIKLRKFKNGG-RYYAIVQFTSTRDAE 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
             IISLA  RLWYG+SYL AR+ D DIV KPRTY+H+LE++TL FGCQ+S EKF VLW+ +
Sbjct: 61   FIISLAGARLWYGTSYLTARSMDTDIVAKPRTYLHSLENITLHFGCQISKEKFSVLWKRE 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
               V FG+ +R+++FH ++ +VEY+ QLSYENIWQI+LHR   Q++K LLIQLYGAPRIY
Sbjct: 121  NVSVDFGIGLRRLHFHFMYQYVEYKLQLSYENIWQIELHRPLGQTVKYLLIQLYGAPRIY 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            +K  PSSG +++DP+FNFFK+ PDDQWVR  DFTPS  +GQSS+LCL+LP+G +LPNF+ 
Sbjct: 181  EKDVPSSGDVYEDPIFNFFKDTPDDQWVRATDFTPSCRIGQSSALCLELPSGPRLPNFKE 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300
            +FAYY+E E  F L + G  FSC+  LVP+V    +V LPY+IIFK+N L+Q GC+ GPS
Sbjct: 241  NFAYYKESEGRFSL-ETGFPFSCNLYLVPIVGPPLDVHLPYDIIFKINALLQQGCLTGPS 300

Query: 301  LDTGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKY--AKHPSNSPAIA 360
            LD  FYRLVDP RI V  +E+AL+KL++LKECCYEPS++L EQY+KY  +K P  SP I+
Sbjct: 301  LDAAFYRLVDPRRINVACIEHALDKLYNLKECCYEPSTWLNEQYRKYFKSKRPPKSPMIS 360

Query: 361  LDDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDL 420
            LD GLVYVRRVQITPCKVYF GPE+NVSNRVLRH+   +DNFLRVSFVDEE DKM STDL
Sbjct: 361  LDAGLVYVRRVQITPCKVYFFGPEINVSNRVLRHYPNHIDNFLRVSFVDEELDKMYSTDL 420

Query: 421  LPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDA 480
             PR +++    KT +Y+R+LSVL++GI IG+KKF+FLAFSSSQLR+NS WMFA   G+ A
Sbjct: 421  SPRNSAT----KTGLYKRVLSVLRDGIIIGNKKFEFLAFSSSQLRDNSTWMFAPSDGITA 480

Query: 481  AVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSD 540
            A IREWMGDFR I+N AKYAARLGQSFGSSTETLSV+RHE E IPDIEV +G VKY FSD
Sbjct: 481  ADIREWMGDFRQIRNVAKYAARLGQSFGSSTETLSVSRHEVEKIPDIEVVYGGVKYAFSD 540

Query: 541  GIGKISSDFAKRVASKCVL-AFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESD 600
            GIGKISS+FA++VASKC     TPSAFQIRYGGYKGVVAVDP SS KLSLRKSMCK+ESD
Sbjct: 541  GIGKISSEFARKVASKCGCNGVTPSAFQIRYGGYKGVVAVDPTSSFKLSLRKSMCKYESD 600

Query: 601  NTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEAL 660
            N KLDVL YSK+QPCFLNRQLI+LLSTLGV+D+VF KKQS+A++QLDAILTDPL+AQEAL
Sbjct: 601  NIKLDVLAYSKFQPCFLNRQLISLLSTLGVEDQVFLKKQSKAVQQLDAILTDPLRAQEAL 660

Query: 661  ELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGC 720
            +LMSPGENTN+LKE+L CGYKPD EPYLSMMLQTFR SKLLELRTKSRIFIP+GRAMMGC
Sbjct: 661  DLMSPGENTNVLKELLMCGYKPDTEPYLSMMLQTFRASKLLELRTKSRIFIPDGRAMMGC 720

Query: 721  LDETGTLEYGQVFVQISSVRHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDVRV 780
            LDET TLEYGQVFVQ S  R+R   D+     +G++   ++ G+V VAKNPCLHPGDVRV
Sbjct: 721  LDETRTLEYGQVFVQFSGSRYRQFGDSPMLGGNGTKQRFIVTGSVVVAKNPCLHPGDVRV 780

Query: 781  LNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYT 840
            L AVNV  L+HMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD ELIP  QI PMDYT
Sbjct: 781  LRAVNVSELHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPCHQIEPMDYT 840

Query: 841  PAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFS 900
            PAP +  D DVTIE+VQEYF NY+VNDSLGIIANAHT FADKE  KA S+PC+ELA+LFS
Sbjct: 841  PAPSMLKDDDVTIEEVQEYFANYIVNDSLGIIANAHTVFADKEYGKAMSSPCVELARLFS 900

Query: 901  IAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRS 960
            IAVDFPKTG+PA+IP HL+VKE+PDFMEKPD+ +YES+NVIGKLFR VK IAPN S IRS
Sbjct: 901  IAVDFPKTGIPAVIPPHLHVKEYPDFMEKPDKQTYESQNVIGKLFREVKDIAPNTSSIRS 960

Query: 961  FTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRM 1020
            FT +VA + YD DME +GFEDY++DA Y+K  YDYKLGNLLDYYGIK+E+EI SG+I+RM
Sbjct: 961  FTSEVARKSYDPDMEVDGFEDYLDDAYYYKNSYDYKLGNLLDYYGIKTEAEILSGSILRM 1020

Query: 1021 SKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWG 1080
            SKSFT+RRDAE+IN+A R+LRKEAR WFN K SG D  SDDL+AKASAWYHVTYH SYWG
Sbjct: 1021 SKSFTKRRDAESINMAVRALRKEARNWFNEKRSGGDFESDDLYAKASAWYHVTYHPSYWG 1080

Query: 1081 SYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRVLNLD 1130
            SYN+GM RDHYLSF WCVY +L+++KE+   RR      +  + F   L L+
Sbjct: 1081 SYNEGMNRDHYLSFAWCVYDRLVEIKEDKASRRRHLQLSSLEEHFCYGLRLN 1126

BLAST of CmoCh04G000890 vs. NCBI nr
Match: gi|224099571|ref|XP_002311536.1| (RNA-directed RNA Polymerase family protein [Populus trichocarpa])

HSP 1 Score: 1581.6 bits (4094), Expect = 0.0e+00
Identity = 776/1133 (68.49%), Postives = 918/1133 (81.02%), Query Frame = 1

Query: 1    MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
            M KTV +SGFPS  TA +V+ FLE  TG GTV A+K+R  + GG+R YAIVQF     AE
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 61   LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
             IISLAN RLWYG SYL AR  D DI+P+PR+++HT+E +TL FG Q S EKF  +W G+
Sbjct: 61   QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 121  VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
               V FG+ MRK++F L HN  EY+  L +ENIWQI+LHR + Q++K LLIQLYGAPRIY
Sbjct: 121  NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180

Query: 181  KKVAPSSGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSVGQSSSLCLKLPNGRQLPNFRR 240
            ++  PSS  +F+DPL N+F++VPD+QWVRT DFTPS  +G SSSLCL+LPN  QLPNF  
Sbjct: 181  ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNE 240

Query: 241  HFAYYEEFEDEFKLVDGGNSFSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIAGPS 300
            +F YY+E E  F L + G +FS + DLVP+V     V LPY I+F+VN+LVQNGC+AG  
Sbjct: 241  NFFYYKENEGTFVL-ESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 300

Query: 301  LDTGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKY--AKHPSNSPAIA 360
            LD  FYRLVDP+R+ V  +E ALEKL+HLKECCYEPS +  EQYKKY  + +P  SP ++
Sbjct: 301  LDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 360

Query: 361  LDDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDL 420
            LD GLVYV +VQITPCKV+FCGPEVNVSNRVLR +  D+DNFLRVSFVDEE +K+ STD+
Sbjct: 361  LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDV 420

Query: 421  LPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDA 480
             PR +S  E  +T IY RILS L+NGI IGDKKF+FLAFSSSQLRENS WMFASR GL A
Sbjct: 421  SPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTA 480

Query: 481  AVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSD 540
            A IR WMG F  I+N A+YAARLGQSFGSSTETLSV+ HE EIIPDIEV  G  +Y+FSD
Sbjct: 481  ADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSD 540

Query: 541  GIGKISSDFAKRVASKC-VLAFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESD 600
            GIGKIS++FA++VA KC    FTPSAFQIRY GYKGVVAVDP SS KLSLR+SM K+ES+
Sbjct: 541  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 600

Query: 601  NTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEAL 660
            NTKLDVL +SKYQPCFLNRQLITLLSTLGV D  FE+KQ EA++QLDA+LTDPL+AQEAL
Sbjct: 601  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 660

Query: 661  ELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGC 720
            ELMSPGENTNILKEML CGY+PD EP+LSMMLQTFR SKLLELRTK+RIFIPNGR+MMGC
Sbjct: 661  ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 720

Query: 721  LDETGTLEYGQVFVQISSVRHRHISDTS-AFDMSGSEDHLVIVGNVTVAKNPCLHPGDVR 780
            LDET TLE+GQVFV+ S  R R++ D+S  F   G     +I G+V VAKNPCLHPGD+R
Sbjct: 721  LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 780

Query: 781  VLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDY 840
            +L AV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP +QI PMDY
Sbjct: 781  ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 840

Query: 841  TPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLF 900
            TP PP+QLD DVTIE+V+EYF NY+VNDSLG+IANAHTA ADKE  KA S PC+ELA+ F
Sbjct: 841  TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 900

Query: 901  SIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIR 960
            SIAVDFPKTGVPA IPS+L  +E+PDFMEKPD+PSYES+NVIGKLFR VK IAP  S IR
Sbjct: 901  SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 960

Query: 961  SFTRDVAMRCYDSDMETEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMR 1020
            SFT DVA +CYD DME +GFEDY++DA Y+K+ YDYKLGNL++YYGIK+E+E+ SG+ M+
Sbjct: 961  SFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMK 1020

Query: 1021 MSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYW 1080
            MSKSFT++RDAEAI +A RSL+KEAR+WFN K SG DS +DD+ AKASAWYHVTYHH+YW
Sbjct: 1021 MSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYW 1080

Query: 1081 GSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDR-FSRVLNL 1129
            G YN+GM RDH+LSFPWCVY KL+Q+K  N  R  ++  L +++R FSR L+L
Sbjct: 1081 GCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132