CmoCh04G000600 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G000600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cmo_Chr04 : 331000 .. 331920 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGAAGTATGTTACAAGCAAGGAGACTTCCAAACCAATTTTGGGCCGAAGCCGTAGCAACATCTGTTTATCTATTAAACATCTCACCAACAAAGGCGGTTATGAATCGAACTCCCTATGAAGCATGGCATGGAAGGAAACCATCTGTAAGTCATTTACGAATCTTTGGTTGTGTTGCTTATGCTTTGAAACATCCTCAAACTCGTCAAAAGCTTGATGAAAAATCTGAAAAATGCATTTTCATTGGCTATTGTACTCAATCAAAGGCATATAAACTATACAACCCCGTTAGTGAAAAGATTTTAGTTAGAAGAGATGTAATATTTAATGAAAACGTGAGTTGGGATTGGAGTAAAGAACAGGAGCAGCAAAAGATTACAGTTGAAGTTTCCCCAAATGAAGAGACAAGGGTCAACTCCAGTGCATCTCCCAGTGGTTCCACTGCAACACAAAGTGTGTCAAATTCATCATCTTCAGCATCACTTAATAGCAATTCTTCTCTTGAAGAACTTTCAGATGAGACACCTCCAAGGAAGTATAAATCTTTAGTTGACATATATGCATCATGTCAGTTTGCTCTTACTATTTCAGACCCTATGAATTATGAAGAAGCAACTGAAAAAGAAGACGGGAAGAAAGCCATGACAGTAGAGATGCAGTCCGTTAAGAAAGATGGAACATGGGATATGGTTGACCTACCAAACGAAAAGCTTTATGGAGATTTACAAGAAGAGATTTATGTAACACCGCCAGAGGGATTCATAAAGGAAGACAAAGAAACAAAGGTATACAAGCTGAGACAGACATTGTACGGGTTAAAGCAGACATACTTACGAAGGCCTTGTCAGAAGAAAAGCTCTGTACTTACGTCTACAACTTTGAATCATGGGGGAGTGTTGAGATATGATTCAAAATGA

mRNA sequence

ATGGCAAGAAGTATGTTACAAGCAAGGAGACTTCCAAACCAATTTTGGGCCGAAGCCGTAGCAACATCTGTTTATCTATTAAACATCTCACCAACAAAGGCGGTTATGAATCGAACTCCCTATGAAGCATGGCATGGAAGGAAACCATCTGTAAGTCATTTACGAATCTTTGGTTGTGTTGCTTATGCTTTGAAACATCCTCAAACTCGTCAAAAGCTTGATGAAAAATCTGAAAAATGCATTTTCATTGGCTATTGTACTCAATCAAAGGCATATAAACTATACAACCCCGTTAGTGAAAAGATTTTAGTTAGAAGAGATGTAATATTTAATGAAAACGTGAGTTGGGATTGGAGTAAAGAACAGGAGCAGCAAAAGATTACAGTTGAAGTTTCCCCAAATGAAGAGACAAGGGTCAACTCCAGTGCATCTCCCAGTGGTTCCACTGCAACACAAAGTGTGTCAAATTCATCATCTTCAGCATCACTTAATAGCAATTCTTCTCTTGAAGAACTTTCAGATGAGACACCTCCAAGGAAGTATAAATCTTTAGTTGACATATATGCATCATGTCAGTTTGCTCTTACTATTTCAGACCCTATGAATTATGAAGAAGCAACTGAAAAAGAAGACGGGAAGAAAGCCATGACAGTAGAGATGCAGTCCGTTAAGAAAGATGGAACATGGGATATGGTTGACCTACCAAACGAAAAGCTTTATGGAGATTTACAAGAAGAGATTTATGTAACACCGCCAGAGGGATTCATAAAGGAAGACAAAGAAACAAAGGTATACAAGCTGAGACAGACATTGTACGGGTTAAAGCAGACATACTTACGAAGGCCTTGTCAGAAGAAAAGCTCTGTACTTACGTCTACAACTTTGAATCATGGGGGAGTGTTGAGATATGATTCAAAATGA

Coding sequence (CDS)

ATGGCAAGAAGTATGTTACAAGCAAGGAGACTTCCAAACCAATTTTGGGCCGAAGCCGTAGCAACATCTGTTTATCTATTAAACATCTCACCAACAAAGGCGGTTATGAATCGAACTCCCTATGAAGCATGGCATGGAAGGAAACCATCTGTAAGTCATTTACGAATCTTTGGTTGTGTTGCTTATGCTTTGAAACATCCTCAAACTCGTCAAAAGCTTGATGAAAAATCTGAAAAATGCATTTTCATTGGCTATTGTACTCAATCAAAGGCATATAAACTATACAACCCCGTTAGTGAAAAGATTTTAGTTAGAAGAGATGTAATATTTAATGAAAACGTGAGTTGGGATTGGAGTAAAGAACAGGAGCAGCAAAAGATTACAGTTGAAGTTTCCCCAAATGAAGAGACAAGGGTCAACTCCAGTGCATCTCCCAGTGGTTCCACTGCAACACAAAGTGTGTCAAATTCATCATCTTCAGCATCACTTAATAGCAATTCTTCTCTTGAAGAACTTTCAGATGAGACACCTCCAAGGAAGTATAAATCTTTAGTTGACATATATGCATCATGTCAGTTTGCTCTTACTATTTCAGACCCTATGAATTATGAAGAAGCAACTGAAAAAGAAGACGGGAAGAAAGCCATGACAGTAGAGATGCAGTCCGTTAAGAAAGATGGAACATGGGATATGGTTGACCTACCAAACGAAAAGCTTTATGGAGATTTACAAGAAGAGATTTATGTAACACCGCCAGAGGGATTCATAAAGGAAGACAAAGAAACAAAGGTATACAAGCTGAGACAGACATTGTACGGGTTAAAGCAGACATACTTACGAAGGCCTTGTCAGAAGAAAAGCTCTGTACTTACGTCTACAACTTTGAATCATGGGGGAGTGTTGAGATATGATTCAAAATGA

Homology

[Close]

BLAST of CmoCh04G000600 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-23
Identity = 87/258 (33.72%), Postives = 131/258 (50.78%), Query Frame = 1


Query: 3   RSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCVAY 62
           RSML+  +LP  FW EAV T+ YL+N SP+  +    P   W  ++ S SHL++FGC A+
Sbjct: 597 RSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAF 656

Query: 63  ALKHPQTRQKLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFNENVSWDWSKEQ 122
           A    + R KLD+KS  CIFIGY  +   Y+L++PV +K++  RDV+F E  S   +   
Sbjct: 657 AHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRE--SEVRTAAD 716

Query: 123 EQQKITVEVSPNEETRVNSSASP-SGSTATQSVSNSSSSAS--LNSNSSLEE-------- 182
             +K+   + PN  T  ++S +P S  + T  VS         +     L+E        
Sbjct: 717 MSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHP 776

Query: 183 -LSDETPPRKYKSLVDIYASCQFALT----ISD---PMNYEEA---TEKEDGKKAMTVEM 239
              +E      +S      S ++  T    ISD   P + +E     EK    KAM  EM
Sbjct: 777 TQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEM 836

[Close]

BLAST of CmoCh04G000600 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-17
Identity = 67/195 (34.36%), Postives = 104/195 (53.33%), Query Frame = 1


Query: 2   ARSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMN--RTPYEAWHGRKPSVSHLRIFGC 61
           AR+M+   +L   FW EAV T+ YL+N  P++A+++  +TPYE WH +KP + HLR+FG 
Sbjct: 596 ARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGA 655

Query: 62  VAYALKHPQTRQ-KLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFN------- 121
             Y   H + +Q K D+KS K IF+GY  +   +KL++ V+EK +V RDV+ +       
Sbjct: 656 TVYV--HIKNKQGKFDDKSFKSIFVGY--EPNGFKLWDAVNEKFIVARDVVVDETNMVNS 715

Query: 122 -----ENVSWDWSKEQEQQKITVEVSPNEETRVNSSASPSGSTA---TQSVSNSSSSASL 178
                E V    SKE E +       PN+  ++  +  P+ S      Q + +S  S + 
Sbjct: 716 RAVKFETVFLKDSKESENKNF-----PNDSRKIIQTEFPNESKECDNIQFLKDSKESENK 775

[Close]

BLAST of CmoCh04G000600 vs. Swiss-Prot
Match: M710_ARATH (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-06
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 3  RSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCVAY 62
          RSML    LP  F A+A  T+V+++N  P+ A+    P E W    P+ S+LR FGCVAY
Sbjct: 10 RSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVAY 69

[Close]

BLAST of CmoCh04G000600 vs. TrEMBL
Match: A5BT67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020406 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.2e-72
Identity = 154/290 (53.10%), Postives = 202/290 (69.66%), Query Frame = 1


Query: 1   MARSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCV 60
           MARSM++A+ L N FWAE VAT+VYLLNISPTKAV+NRTPYEAW+G+KP VSHL++FG V
Sbjct: 546 MARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGKKPWVSHLKVFGSV 605

Query: 61  AYALKHPQTRQKLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFNENVSWDWSK 120
           AY L     R KLDEKS KCIFIGYC+QSK YKLYNPVS KI+V R+V+F+E  SW W  
Sbjct: 606 AYTLIESHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVFDEKASWTWRV 665

Query: 121 EQEQQKITVEVSPNEETRVNSSASPSGS-TATQSVSNSSSSASLNSNSSLEELSDETPPR 180
            ++     VE+S   E   +    PS    A+ + S+S SS +L+S+SS  + S+ETPPR
Sbjct: 666 SED--GALVEISSESEVAQSEDQQPSVQIPASPTPSHSPSSPNLSSSSS-SQSSEETPPR 725

Query: 181 KYKSLVDIYASCQFALTISDPMNYEEATEKEDGKKAMTVEMQSVKKDGTWDMVDLPNEK- 240
           K++SL DIY + Q  L ++DP  +EEA EKE+   AM  E+ +++K+ TW++V+LP +K 
Sbjct: 726 KFRSLRDIYETTQ-VLFVADPTTFEEAVEKEEWXSAMKEEIAAIEKNETWELVELPEDKN 785

Query: 241 ------------LYGDLQEEIYVTPPEGFIKEDKETKVYKLRQTLYGLKQ 277
                       L  +L EE+YV+ PEGFI  DKE  VY+L++ LYGLKQ
Sbjct: 786 VIGVKWVFXTXYLADELVEEVYVSQPEGFIVPDKEEHVYRLKKALYGLKQ 831

[Close]

BLAST of CmoCh04G000600 vs. TrEMBL
Match: A0A0V0IV83_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 3.0e-68
Identity = 142/250 (56.80%), Postives = 175/250 (70.00%), Query Frame = 1


Query: 1   MARSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCV 60
           MARSMLQA+ L NQFWAEAVA S+YLLN+SPTK VMN+TPYEAWH RKP+VSHLR+FGCV
Sbjct: 621 MARSMLQAKELANQFWAEAVAASIYLLNLSPTKVVMNKTPYEAWHCRKPNVSHLRVFGCV 680

Query: 61  AYALKHPQTRQKLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFNENVSWDWSK 120
           AYAL   Q RQKLDEKSEKCIFIGYCT SKAY+LYNP + KI VRRDVIF+EN SWDWS+
Sbjct: 681 AYALVSSQARQKLDEKSEKCIFIGYCTHSKAYRLYNPFNGKISVRRDVIFDENASWDWSE 740

Query: 121 EQEQQKITVEVSPNEETRVNSSASPSGSTATQSVSNSSSSASLNSNSSLEELSDE----- 180
           +  +Q+  + +   EE          GST   S S SS     +  S   E S +     
Sbjct: 741 KLVRQETPMPLGITEE-------EEKGSTPASSFSGSSMELPTSPISETHEESSDGIVPL 800

Query: 181 -------TPPRKYKSLVDIYASCQFALTISDPMNYEEATEKEDGKKAMTVEMQSVKKDGT 239
                  TP  KY +  ++YA+CQFA ++SDP+NYEEA EKE+ +K +  EM+S +K+GT
Sbjct: 801 RRSTRLRTPNPKYAN--NLYATCQFAFSVSDPLNYEEAAEKEEWRKEIVEEMKSNEKNGT 860

[Close]

BLAST of CmoCh04G000600 vs. TrEMBL
Match: A5AL21_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031870 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.9e-60
Identity = 146/315 (46.35%), Postives = 190/315 (60.32%), Query Frame = 1


Query: 1   MARSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCV 60
           MARSM++A+ L N FWAE VAT+VYLLNISPTKAV+NRTPYEAW+GRKP VSHL++FG V
Sbjct: 612 MARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSV 671

Query: 61  AYALKHPQTRQKLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFNENVSWDWSK 120
           AY L        LDEKS KCIFIGYC+QSK YKLYNPVS KI+V R+V+ +E  SW W  
Sbjct: 672 AYTLIDSHNHSNLDEKSIKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVXDEKASWTWRV 731

Query: 121 EQEQQKITVEVSPNEETRVNSSASPSGST-ATQSVSNSSSSASLNSNSSLEELSDETPPR 180
            ++     VE+S   E   +    PS    A  + S+S SS +L+S+SS +  S+ETPPR
Sbjct: 732 SEDGA--LVEISSESEVAQSEDQQPSVQIPAXPTPSHSPSSPNLSSSSSSQS-SEETPPR 791

Query: 181 KYKSLVDIYASCQFALTISDPMNYEEATEKEDGKKAMTVEMQSVKKDGTWDMVDL----- 240
           K++SL DIY + Q  L ++DP  +EEA EKE+   AM  E+ +++K+ TW++V+L     
Sbjct: 792 KFRSLRDIYETTQ-VLFVADPTTFEEAVEKEEWCSAMKEEIVAIEKNETWELVELPEDKN 851

Query: 241 ----------------PNEKLYGDLQEEIYVTP-----------------PEGFIKEDKE 277
                             +K    L  + Y                    PEGFI   KE
Sbjct: 852 VIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVARFETPEGFIVPSKE 911

[Close]

BLAST of CmoCh04G000600 vs. TrEMBL
Match: A5AHH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032906 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.1e-59
Identity = 127/238 (53.36%), Postives = 163/238 (68.49%), Query Frame = 1


Query: 1   MARSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCV 60
           MARSM+ A+ L N FWAE VAT+VYLLNISPTKAV+NRTPYEAW+GRKP VSHL++FG V
Sbjct: 723 MARSMMXAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSV 782

Query: 61  AYALKHPQTRQKLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFNENVSWDWSK 120
           AY L     R KLDEKS KCIFIGYC+QSK YKLYNPVS KI+V R+V+F+E  S  W  
Sbjct: 783 AYTLXBSHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVFDEKASXTWRV 842

Query: 121 EQEQQKITVEVSPNEETRVNSSASPSGSTATQSVSNSSSSASLNSNSSLEELSDETPPRK 180
            ++     VE+S   E   +    PS         + S S+   S SS  + S+ETPPRK
Sbjct: 843 SED--GALVEISSESEMAQSEDQQPSVQIPXSPTPSHSPSSPNLSXSSSSQSSEETPPRK 902

Query: 181 YKSLVDIYASCQFALTISDPMNYEEATEKEDGKKAMTVEMQSVKKDGTWDMVDLPNEK 239
           ++SL DIY + Q  L ++DP  +EEA EKE+   AM  E+ +++K+ TW++V+LP +K
Sbjct: 903 FRSLRDIYETTQ-VLFVADPTTFEEAVEKEEWCSAMKEEIAAIEKNETWELVELPEDK 957

[Close]

BLAST of CmoCh04G000600 vs. TrEMBL
Match: B6REL8_9BRAS (Integrase OS=Boechera divaricarpa GN=TnInt1 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 4.0e-57
Identity = 134/279 (48.03%), Postives = 179/279 (64.16%), Query Frame = 1


Query: 1   MARSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCV 60
           MARSML+ R LPNQFWAE+V T+VYLLNISPTKAV+NRTPYEAW GRKP VSHLR+FG V
Sbjct: 453 MARSMLKERNLPNQFWAESVRTAVYLLNISPTKAVLNRTPYEAWCGRKPGVSHLRVFGSV 512

Query: 61  AYALKHPQTRQKLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFNENVSWDWSK 120
            Y+L     R+KLDEKSEKCIF+GYC+QSK Y+LYNPVS KI+  R+V F+E   W W +
Sbjct: 513 CYSLIDAHNRKKLDEKSEKCIFLGYCSQSKGYRLYNPVSGKIVESRNVTFDEEAVWTWRE 572

Query: 121 EQEQQKITVEVSPNEETRVN-SSASPSGSTATQSVSNSSSSASLNSNSSLEELSDETPPR 180
               +   VE+  N+E   N S A+ + +T   S  +S    + N +S  E  S  +PP+
Sbjct: 573 GDNGE--LVEIFVNDEQEENPSPANSATNTPASSAPSSPGPNNGNGSSDGEGSSSISPPQ 632

Query: 181 KYKSLVDIYASCQFALTISDPMNYEEATEKEDGKKAMTVEMQSVKKDGTWDMVDLPNEKL 240
           K++SL +IY   Q A   +DP+   EA  KE+ +KAM  E+ S++K+ TW +V+LP EK 
Sbjct: 633 KFRSLREIYEE-QHAFFSADPVTVNEAATKEEWRKAMEEEIASIEKNQTWQLVELPEEK- 692

Query: 241 YGDLQEEIYVTPPEGFIKEDKETKVYKLRQTLYGLKQTY 279
           +    + ++ T      + D   + YK R  + G  Q Y
Sbjct: 693 HSIGVKWVFKTK----YQADDNIQKYKARLVVKGYAQEY 723

[Close]

BLAST of CmoCh04G000600 vs. TAIR10
Match: ATMG00710.1 (ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-07
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 3  RSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCVAY 62
          RSML    LP  F A+A  T+V+++N  P+ A+    P E W    P+ S+LR FGCVAY
Sbjct: 10 RSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVAY 69

[Close]

BLAST of CmoCh04G000600 vs. NCBI nr
Match: gi|147811646|emb|CAN72676.1| (hypothetical protein VITISV_020406 [Vitis vinifera])

HSP 1 Score: 281.6 bits (719), Expect = 1.7e-72
Identity = 154/290 (53.10%), Postives = 202/290 (69.66%), Query Frame = 1


Query: 1   MARSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCV 60
           MARSM++A+ L N FWAE VAT+VYLLNISPTKAV+NRTPYEAW+G+KP VSHL++FG V
Sbjct: 546 MARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGKKPWVSHLKVFGSV 605

Query: 61  AYALKHPQTRQKLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFNENVSWDWSK 120
           AY L     R KLDEKS KCIFIGYC+QSK YKLYNPVS KI+V R+V+F+E  SW W  
Sbjct: 606 AYTLIESHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVFDEKASWTWRV 665

Query: 121 EQEQQKITVEVSPNEETRVNSSASPSGS-TATQSVSNSSSSASLNSNSSLEELSDETPPR 180
            ++     VE+S   E   +    PS    A+ + S+S SS +L+S+SS  + S+ETPPR
Sbjct: 666 SED--GALVEISSESEVAQSEDQQPSVQIPASPTPSHSPSSPNLSSSSS-SQSSEETPPR 725

Query: 181 KYKSLVDIYASCQFALTISDPMNYEEATEKEDGKKAMTVEMQSVKKDGTWDMVDLPNEK- 240
           K++SL DIY + Q  L ++DP  +EEA EKE+   AM  E+ +++K+ TW++V+LP +K 
Sbjct: 726 KFRSLRDIYETTQ-VLFVADPTTFEEAVEKEEWXSAMKEEIAAIEKNETWELVELPEDKN 785

Query: 241 ------------LYGDLQEEIYVTPPEGFIKEDKETKVYKLRQTLYGLKQ 277
                       L  +L EE+YV+ PEGFI  DKE  VY+L++ LYGLKQ
Sbjct: 786 VIGVKWVFXTXYLADELVEEVYVSQPEGFIVPDKEEHVYRLKKALYGLKQ 831

[Close]

BLAST of CmoCh04G000600 vs. NCBI nr
Match: gi|147794682|emb|CAN60366.1| (hypothetical protein VITISV_031870 [Vitis vinifera])

HSP 1 Score: 240.0 bits (611), Expect = 5.6e-60
Identity = 146/315 (46.35%), Postives = 190/315 (60.32%), Query Frame = 1


Query: 1   MARSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCV 60
           MARSM++A+ L N FWAE VAT+VYLLNISPTKAV+NRTPYEAW+GRKP VSHL++FG V
Sbjct: 612 MARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSV 671

Query: 61  AYALKHPQTRQKLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFNENVSWDWSK 120
           AY L        LDEKS KCIFIGYC+QSK YKLYNPVS KI+V R+V+ +E  SW W  
Sbjct: 672 AYTLIDSHNHSNLDEKSIKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVXDEKASWTWRV 731

Query: 121 EQEQQKITVEVSPNEETRVNSSASPSGST-ATQSVSNSSSSASLNSNSSLEELSDETPPR 180
            ++     VE+S   E   +    PS    A  + S+S SS +L+S+SS +  S+ETPPR
Sbjct: 732 SEDGA--LVEISSESEVAQSEDQQPSVQIPAXPTPSHSPSSPNLSSSSSSQS-SEETPPR 791

Query: 181 KYKSLVDIYASCQFALTISDPMNYEEATEKEDGKKAMTVEMQSVKKDGTWDMVDL----- 240
           K++SL DIY + Q  L ++DP  +EEA EKE+   AM  E+ +++K+ TW++V+L     
Sbjct: 792 KFRSLRDIYETTQ-VLFVADPTTFEEAVEKEEWCSAMKEEIVAIEKNETWELVELPEDKN 851

Query: 241 ----------------PNEKLYGDLQEEIYVTP-----------------PEGFIKEDKE 277
                             +K    L  + Y                    PEGFI   KE
Sbjct: 852 VIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVARFETPEGFIVPSKE 911

[Close]

BLAST of CmoCh04G000600 vs. NCBI nr
Match: gi|147771031|emb|CAN60238.1| (hypothetical protein VITISV_032906 [Vitis vinifera])

HSP 1 Score: 238.4 bits (607), Expect = 1.6e-59
Identity = 127/238 (53.36%), Postives = 163/238 (68.49%), Query Frame = 1


Query: 1   MARSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCV 60
           MARSM+ A+ L N FWAE VAT+VYLLNISPTKAV+NRTPYEAW+GRKP VSHL++FG V
Sbjct: 723 MARSMMXAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSV 782

Query: 61  AYALKHPQTRQKLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFNENVSWDWSK 120
           AY L     R KLDEKS KCIFIGYC+QSK YKLYNPVS KI+V R+V+F+E  S  W  
Sbjct: 783 AYTLXBSHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVFDEKASXTWRV 842

Query: 121 EQEQQKITVEVSPNEETRVNSSASPSGSTATQSVSNSSSSASLNSNSSLEELSDETPPRK 180
            ++     VE+S   E   +    PS         + S S+   S SS  + S+ETPPRK
Sbjct: 843 SED--GALVEISSESEMAQSEDQQPSVQIPXSPTPSHSPSSPNLSXSSSSQSSEETPPRK 902

Query: 181 YKSLVDIYASCQFALTISDPMNYEEATEKEDGKKAMTVEMQSVKKDGTWDMVDLPNEK 239
           ++SL DIY + Q  L ++DP  +EEA EKE+   AM  E+ +++K+ TW++V+LP +K
Sbjct: 903 FRSLRDIYETTQ-VLFVADPTTFEEAVEKEEWCSAMKEEIAAIEKNETWELVELPEDK 957

[Close]

BLAST of CmoCh04G000600 vs. NCBI nr
Match: gi|158578541|gb|ABW74566.1| (integrase [Boechera divaricarpa])

HSP 1 Score: 229.9 bits (585), Expect = 5.8e-57
Identity = 134/279 (48.03%), Postives = 179/279 (64.16%), Query Frame = 1


Query: 1   MARSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCV 60
           MARSML+ R LPNQFWAE+V T+VYLLNISPTKAV+NRTPYEAW GRKP VSHLR+FG V
Sbjct: 453 MARSMLKERNLPNQFWAESVRTAVYLLNISPTKAVLNRTPYEAWCGRKPGVSHLRVFGSV 512

Query: 61  AYALKHPQTRQKLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFNENVSWDWSK 120
            Y+L     R+KLDEKSEKCIF+GYC+QSK Y+LYNPVS KI+  R+V F+E   W W +
Sbjct: 513 CYSLIDAHNRKKLDEKSEKCIFLGYCSQSKGYRLYNPVSGKIVESRNVTFDEEAVWTWRE 572

Query: 121 EQEQQKITVEVSPNEETRVN-SSASPSGSTATQSVSNSSSSASLNSNSSLEELSDETPPR 180
               +   VE+  N+E   N S A+ + +T   S  +S    + N +S  E  S  +PP+
Sbjct: 573 GDNGE--LVEIFVNDEQEENPSPANSATNTPASSAPSSPGPNNGNGSSDGEGSSSISPPQ 632

Query: 181 KYKSLVDIYASCQFALTISDPMNYEEATEKEDGKKAMTVEMQSVKKDGTWDMVDLPNEKL 240
           K++SL +IY   Q A   +DP+   EA  KE+ +KAM  E+ S++K+ TW +V+LP EK 
Sbjct: 633 KFRSLREIYEE-QHAFFSADPVTVNEAATKEEWRKAMEEEIASIEKNQTWQLVELPEEK- 692

Query: 241 YGDLQEEIYVTPPEGFIKEDKETKVYKLRQTLYGLKQTY 279
           +    + ++ T      + D   + YK R  + G  Q Y
Sbjct: 693 HSIGVKWVFKTK----YQADDNIQKYKARLVVKGYAQEY 723

[Close]

BLAST of CmoCh04G000600 vs. NCBI nr
Match: gi|47824985|gb|AAT38758.1| (Putative gag-pol polyprotein, identical [Solanum demissum])

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 121/246 (49.19%), Postives = 168/246 (68.29%), Query Frame = 1


Query: 1   MARSMLQARRLPNQFWAEAVATSVYLLNISPTKAVMNRTPYEAWHGRKPSVSHLRIFGCV 60
           MARS L+A+ LP+ FW EAVAT VY LNISPTK V N TP EAW+G+KP VSHLRIFGC+
Sbjct: 617 MARSSLKAKGLPDYFWGEAVATVVYFLNISPTKDVWNTTPLEAWNGKKPRVSHLRIFGCI 676

Query: 61  AYALKHPQTRQKLDEKSEKCIFIGYCTQSKAYKLYNPVSEKILVRRDVIFNENVSWDWSK 120
           AYAL +     KLDEKS KCIF+GY  QSKAY+LYNP+S K+++ R+V+FNE+VSW+++ 
Sbjct: 677 AYALVN--FHSKLDEKSTKCIFVGYSLQSKAYRLYNPISGKVIISRNVVFNEDVSWNFNS 736

Query: 121 EQEQQKITVEVSPNEETRVNSSASPSGSTATQSVSN--SSSSASLNSNSSLEEL------ 180
                 I + +  +EE+ V+   SP+ S  + SVS+  + S+      SS+E +      
Sbjct: 737 GNMMSNIQL-LPTDEESAVDFGNSPNSSPVSSSVSSPIAPSTTVAPDESSVEPIPLRRST 796

Query: 181 SDETPPRKYKSLVDIYASCQFALTISDPMNYEEATEKEDGKKAMTVEMQSVKKDGTWDMV 239
            ++ P  KY + V+   SCQFAL +SDP+ YEEA E+ + K AM  E+Q+++++ TW++V
Sbjct: 797 REKKPNPKYSNTVN--TSCQFALLVSDPICYEEAVEQSEWKNAMIEEIQAIERNSTWELV 856

The following BLAST results are available for this feature:

BLAST of CmoCh04G000600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	2.5e-23	33.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	1.5e-17	34.36	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M710_ARATH	3.6e-06	45.00	Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CmoCh04G000600 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BT67_VITVI	1.2e-72	53.10	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020406 PE=4 SV=1	[more]
A0A0V0IV83_SOLCH	3.0e-68	56.80	Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1	[more]
A5AL21_VITVI	3.9e-60	46.35	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031870 PE=4 SV=1	[more]
A5AHH2_VITVI	1.1e-59	53.36	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032906 PE=4 SV=1	[more]
B6REL8_9BRAS	4.0e-57	48.03	Integrase OS=Boechera divaricarpa GN=TnInt1 PE=4 SV=1	[more]

BLAST of CmoCh04G000600 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00710.1	2.0e-07	45.00	ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of CmoCh04G000600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147811646\|emb\|CAN72676.1\|	1.7e-72	53.10	hypothetical protein VITISV_020406 [Vitis vinifera]	[more]
gi\|147794682\|emb\|CAN60366.1\|	5.6e-60	46.35	hypothetical protein VITISV_031870 [Vitis vinifera]	[more]
gi\|147771031\|emb\|CAN60238.1\|	1.6e-59	53.36	hypothetical protein VITISV_032906 [Vitis vinifera]	[more]
gi\|158578541\|gb\|ABW74566.1\|	5.8e-57	48.03	integrase [Boechera divaricarpa]	[more]
gi\|47824985\|gb\|AAT38758.1\|	1.7e-53	49.19	Putative gag-pol polyprotein, identical [Solanum demissum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR013103	RVT_2

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G000600.1	CmoCh04G000600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 6..52 score: 2.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 4..49 score: 8.8
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 225..277 score: 2.8
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..276 score: 1.5
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 1..276 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G000600	Wax gourd	cmowgoB0826
CmoCh04G000600	Wax gourd	cmowgoB0889
CmoCh04G000600	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G000600	Cucurbita moschata (Rifu)	cmocmoB471
CmoCh04G000600	Watermelon (Charleston Gray)	cmowcgB638
CmoCh04G000600	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G000600	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G000600	Cucurbita maxima (Rimu)	cmacmoB746
CmoCh04G000600	Melon (DHL92) v3.5.1	cmomeB629
CmoCh04G000600	Melon (DHL92) v3.5.1	cmomeB636
CmoCh04G000600	Watermelon (Charleston Gray)	cmowcgB676
CmoCh04G000600	Watermelon (97103) v1	cmowmB708
CmoCh04G000600	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G000600	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G000600	Bottle gourd (USVL1VR-Ls)	cmolsiB673
CmoCh04G000600	Melon (DHL92) v3.6.1	cmomedB724
CmoCh04G000600	Silver-seed gourd	carcmoB0250
CmoCh04G000600	Silver-seed gourd	carcmoB0924
CmoCh04G000600	Watermelon (97103) v2	cmowmbB679
CmoCh04G000600	Watermelon (97103) v2	cmowmbB755