CmoCh04G000160 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G000160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Gag-pol polyprotein
Location	Cmo_Chr04 : 83740 .. 85284 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAATCAGCCAAATCCAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTACCAATCCTGGAGTAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCCAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCGCTGTCAACATATTTNNNNNNNNNNACCATGGCGCTGTCAACATATTTCACCAAGCTCAAAGCACTTTGGGATGAACTGGAAGCGTACCGCACACCATTTACCTGTAATCAACGTCAAATACATATTGATCAACGCGAAGAAGACAAGTTGATGCAATTGCTCATGGGGCTTAATCAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAAGAAGAGATGCAGCGTCAGGTAACTTCCGAACCTACTGAGAATTTCTCGATTGCATCAGCAGTGCAAAAGAAAACAATATATTCAAAATTCGCCAAGGACAAAAAGTGTGAACACTGCAATAAAAGTGGTCATACAATCAATGAGTGTCGAATTCTTAAGTTTCACTGTAACTTTTGTGATAGAAGGGGCCATACAGAAGATCGGTGTCGACAGAAAAATAATTCTGGAAGGACAAGACAAGACAATCAACACAATAACCGTGGATATCGATCATCTGCAAATATGGCCGATGTTTCACAGTTGAATACAGAAGAACAGTCACCTAATTCCATTCCAAATTTTTCTTCTGAGCAATTACGAGAGATAGCACAAGCCTTATCTGCAATCAATCATCACCCTTCTGGTAATTCTGACAATCACGTCAATGTTGCAGGTTTGTTTCCCATATCTACATTATCTATTAACTCTGCGAGTTCTAATTCATGGATTCTCGATAGTGGAGCTACGGATCATATAGTATCAAAATCTTCTGTTATGACTGAACCAAAGGCTGCCATCATGTCTGCAATAAATTTGCCTAATGGAGAGACAGCACGTGTGTCACATACTGGCAATATTTCCCTTAGCCCTAACCTTCAATTAAACAACGTTTTATGTGTGCCTTCATTCAATTTAAACCTAATGTCGATCAGCAAACTTACCAATAACTTGAAATGTTATGTCACCTTCTATCCTGATTCTTGTGTTATGCAGGACTTGGCTACGGGGAAGATGATTGGCTCGGGTAAACAATTTGGAGGTCTCTATCATATTTCTTCATCTCCAATCAAATCTTCAGCTCATCAAGTATCT

mRNA sequence

ATGGCGGAATCAGCCAAATCCAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTACCAATCCTGGAGTAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCCAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCGCTGTCAACATATTTNNNNNNNNNNACCATGGCGCTGTCAACATATTTCACCAAGCTCAAAGCACTTTGGGATGAACTGGAAGCGTACCGCACACCATTTACCTGTAATCAACGTCAAATACATATTGATCAACGCGAAGAAGACAAGTTGATGCAATTGCTCATGGGGCTTAATCAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAAGAAGAGATGCAGCGTCAGGTAACTTCCGAACCTACTGAGAATTTCTCGATTGCATCAGCAGTGCAAAAGAAAACAATATATTCAAAATTCGCCAAGGACAAAAAGTGTGAACACTGCAATAAAAGTGGTCATACAATCAATGAGTGTCGAATTCTTAAGTTTCACTGTAACTTTTGTGATAGAAGGGGCCATACAGAAGATCGGTGTCGACAGAAAAATAATTCTGGAAGGACAAGACAAGACAATCAACACAATAACCGTGGATATCGATCATCTGCAAATATGGCCGATGTTTCACAGTTGAATACAGAAGAACAGTCACCTAATTCCATTCCAAATTTTTCTTCTGAGCAATTACGAGAGATAGCACAAGCCTTATCTGCAATCAATCATCACCCTTCTGGTAATTCTGACAATCACGTCAATGTTGCAGGACTTGGCTACGGGGAAGATGATTGGCTCGGGTAAACAATTTGGAGGTCTCTATCATATTTCTTCATCTCCAATCAAATCTTCAGCTCATCAAGTATCT

Coding sequence (CDS)

ATGGCGGAATCAGCCAAATCCAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATTAAATGGAGCAAATTACCAATCCTGGAGTAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAAATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCCAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCGCTGTCAACATATTTNNNNNNNNNNACCATGGCGCTGTCAACATATTTCACCAAGCTCAAAGCACTTTGGGATGAACTGGAAGCGTACCGCACACCATTTACCTGTAATCAACGTCAAATACATATTGATCAACGCGAAGAAGACAAGTTGATGCAATTGCTCATGGGGCTTAATCAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAAGAAGAGATGCAGCGTCAGGTAACTTCCGAACCTACTGAGAATTTCTCGATTGCATCAGCAGTGCAAAAGAAAACAATATATTCAAAATTCGCCAAGGACAAAAAGTGTGAACACTGCAATAAAAGTGGTCATACAATCAATGAGTGTCGAATTCTTAAGTTTCACTGTAACTTTTGTGATAGAAGGGGCCATACAGAAGATCGGTGTCGACAGAAAAATAATTCTGGAAGGACAAGACAAGACAATCAACACAATAACCGTGGATATCGATCATCTGCAAATATGGCCGATGTTTCACAGTTGAATACAGAAGAACAGTCACCTAATTCCATTCCAAATTTTTCTTCTGAGCAATTACGAGAGATAGCACAAGCCTTATCTGCAATCAATCATCACCCTTCTGGTAATTCTGACAATCACGTCAATGTTGCAGGACTTGGCTACGGGGAAGATGATTGGCTCGGGTAA

Homology

[Close]

BLAST of CmoCh04G000160 vs. TrEMBL
Match: A5BNR5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 7.7e-130
Identity = 245/380 (64.47%), Postives = 294/380 (77.37%), Query Frame = 1


Query: 1   MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKI 60
           MA S K+S  +   +D +HP YIHHSDQPG+ LVPIKLNG NYQSWSK+V+HAL  KKKI
Sbjct: 283 MAGSQKASGSENKTIDPSHPLYIHHSDQPGHVLVPIKLNGVNYQSWSKAVIHALTTKKKI 342

Query: 61  GFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHD 120
           GF+DGT+EEPSQ+     FE WNQCNSMI+SWLTH+VE+DIA+GIIHAKTA +VWVDL D
Sbjct: 343 GFVDGTVEEPSQEDEPFMFEQWNQCNSMILSWLTHAVESDIAEGIIHAKTAREVWVDLRD 402

Query: 121 QFSQKNAPAIFQIQNSIATMSQGTMALSTYXXXXTMALSTYFTKLKALWDELEAYRTPFT 180
           QFSQKNAPA+FQIQ SIATMSQG           TM ++ YFTK+KALWDELE YR+P T
Sbjct: 403 QFSQKNAPAVFQIQKSIATMSQG-----------TMTVAAYFTKIKALWDELETYRSPLT 462

Query: 181 CNQRQIHIDQREEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVT 240
           CNQRQ H++QREED+LMQ LMGLN+SYK VRSNILMMSPLPNVRQAYSL+VQEEMQRQV+
Sbjct: 463 CNQRQAHLEQREEDRLMQFLMGLNESYKAVRSNILMMSPLPNVRQAYSLIVQEEMQRQVS 522

Query: 241 SEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDR 300
           SEPTENFSIA+AV  K       + K C+HCN+SGHTI+ECR LKFHC FCD+RGHTEDR
Sbjct: 523 SEPTENFSIAAAVPGK---GGNPRQKMCDHCNRSGHTIDECRTLKFHCKFCDKRGHTEDR 582

Query: 301 CRQKNNSGRTR---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQA 360
           CR KN S       +  +   RG + SAN A  SQ  ++  S +++  F++EQ++++AQA
Sbjct: 583 CRLKNGSNNKTGQFRGQRPFGRGNQPSAN-ATESQEMSDSTSSSTVQGFTTEQIQQLAQA 642

Query: 361 LSAINHHPSGNSDNHVNVAG 377
           + A+NH  SGN D + N AG
Sbjct: 643 IRALNHSNSGNIDAYANAAG 647

[Close]

BLAST of CmoCh04G000160 vs. TrEMBL
Match: A5AWA1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043610 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 107/249 (42.97%), Postives = 158/249 (63.45%), Query Frame = 1


Query: 3   ESAKSSFKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFI 62
           E ++     S  DL++PY+ HHSD PG  L+   LNG NY +W ++++ AL +K K+GF+
Sbjct: 2   EKSEIPTNFSKADLSNPYFTHHSDHPGLVLISKSLNGDNYSAWKRAMILALNSKNKLGFV 61

Query: 63  DGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFS 122
           +G+I+ PS++ +   +  W++CN M+ SW+ +++  +IA  +I+  TAH+VW DL ++FS
Sbjct: 62  NGSIKAPSEEIDPEGYATWSRCNDMVHSWIVNTLNPEIANSVIYYSTAHEVWEDLCERFS 121

Query: 123 QKNAPAIFQIQNSIATMSQGTMALSTYXXXXTMALSTYFTKLKALWDELEAYRTPFTCNQ 182
           Q NAP IF+IQ  IA + Q             +++S Y+TKLK LWDEL +Y        
Sbjct: 122 QSNAPRIFEIQRDIACLRQ-----------EQLSVSAYYTKLKGLWDELASYNA------ 181

Query: 183 RQIHIDQREEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEP 242
              H  Q+++ KLMQ LMGLN+SY  +R  IL+M+PLP+VRQAYS + QEE QR +TS  
Sbjct: 182 -AAHGAQQDQQKLMQFLMGLNESYSVIRGQILLMNPLPSVRQAYSTISQEEKQRLLTSTN 232

Query: 243 TENFSIASA 252
               S ASA
Sbjct: 242 AAAESAASA 232

[Close]

BLAST of CmoCh04G000160 vs. TrEMBL
Match: A5BVX7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044218 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 131/361 (36.29%), Postives = 194/361 (53.74%), Query Frame = 1


Query: 14  VDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDA 73
           +D  +PY++HHSD PG  L+   LNG NY +W +++  +L AK K+GFIDGT   PS   
Sbjct: 12  LDAANPYFLHHSDHPGIVLISKPLNGDNYWTWCRAMTISLNAKSKLGFIDGTTTMPSATD 71

Query: 74  NSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQ 133
              E  LW +CN MI+SW+ +S+  D+A  +I + TA +VW DL D+FSQ NAP IFQI+
Sbjct: 72  KPDEHALWKKCNDMILSWILNSLSQDLADSVIFSTTAQEVWEDLRDRFSQTNAPHIFQIE 131

Query: 134 NSIATMSQGTMALSTYXXXXTMALSTYFTKLKALWDELEAYR-TPFTCNQRQIHIDQREE 193
             IA ++Q             M ++ Y+T+LK LWDEL +Y  T  +C          + 
Sbjct: 132 RDIACLTQ-----------DQMTVAAYYTRLKKLWDELGSYNDTVCSCGA------DHKR 191

Query: 194 DKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQV--TSEPTENFSIAS 253
            +LMQ LMGLN+SY  +R  IL+M+PLP+V +AYS +VQEE QR +  T E TEN   A 
Sbjct: 192 RRLMQFLMGLNESYNAIRGQILLMNPLPDVAKAYSSIVQEEKQRSLGATREMTEN--SAM 251

Query: 254 AVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRC---------R 313
            +++    +   +     H   S    N       HC++CDR  H  + C          
Sbjct: 252 VIRRAEPMALVVR-----HGQGSSSRSNPSNRKPLHCSYCDRDHHVRETCWKLNGYPPEH 311

Query: 314 QKNNSGRTRQDNQH--NNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSA 361
            K+ S R+   + H   N  ++SSAN  +V +    ++ P+     S  Q+++I   +  
Sbjct: 312 PKHASNRSNHGSTHFKRNNSHQSSAN--NVKERPVMQEVPSMTNGLSDLQIQQILSIMQG 346

[Close]

BLAST of CmoCh04G000160 vs. TrEMBL
Match: A5BLV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033389 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 136/378 (35.98%), Postives = 197/378 (52.12%), Query Frame = 1


Query: 14  VDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDA 73
           +D  +PY++HHSD PG  LV   LNG NY +W +++  +L AK K+GFIDGT   PS   
Sbjct: 12  LDAANPYFLHHSDHPGMVLVSKPLNGDNYSTWCRAMTISLNAKSKLGFIDGTTTMPSATD 71

Query: 74  NSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQ 133
              E   W +CN MI+SW+ +S+  D+A  +I + TA +VW DL D+FSQ NAP IF I+
Sbjct: 72  KPDEHASWKKCNDMILSWILNSLSQDLADSVIFSTTAQEVWEDLXDRFSQSNAPRIFXIE 131

Query: 134 NSIATMSQGTMALSTYXXXXTMALSTYFTKLKALWDELEAYR-TPFTCNQRQIHIDQREE 193
             IA ++Q             M ++ Y+T+LK LWDEL +Y  T  +C          + 
Sbjct: 132 XDIACLTQ-----------DQMTVAAYYTRLKKLWDELGSYNDTVCSCGA------DHKR 191

Query: 194 DKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQV--TSEPTENFSIAS 253
            +LMQ LMGLN+SY  +R  IL+M+PLP+V +AYS +VQEE QR +  T E TEN   A 
Sbjct: 192 XRLMQFLMGLNESYNAIRGQILLMNPLPDVAKAYSSIVQEEKQRSLGATRETTEN--SAM 251

Query: 254 AVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRC---------R 313
            VQ+    +   +     H   S    N       HC++CDR  H  + C          
Sbjct: 252 VVQRAEPMALAVR-----HGQGSSSRSNPSNRKPLHCSYCDRDHHVRETCWKLNGYPPEH 311

Query: 314 QKNNSGRTRQDNQH--NNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSA 373
            K+ S R+   + H   N  ++SSAN  +V +    ++ P+     S  Q+++I   +  
Sbjct: 312 PKHASNRSNHGSTHFKRNNSHQSSAN--NVKERXVMQEVPSMTNGLSDLQIQQILSIMQG 363

Query: 374 INHHPSGNSDNHVNVAGL 378
                S N   +   +GL
Sbjct: 372 KGTTQSTNPKANAAASGL 363

[Close]

BLAST of CmoCh04G000160 vs. TrEMBL
Match: A5BJ98_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009790 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.8e-49
Identity = 127/326 (38.96%), Postives = 176/326 (53.99%), Query Frame = 1


Query: 14  VDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDA 73
           +D  +PY++HHSD PG  LV   LNG NY +W +++  +L AK K+GFIDGT    S   
Sbjct: 12  LDAANPYFLHHSDHPGMVLVSKPLNGDNYSTWCRAMTISLNAKSKLGFIDGTTTMSSATD 71

Query: 74  NSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQ 133
              E   W +CN MI+SW+ +S+  D+A  +I + TA +VW DL D+FSQ NAP IFQI+
Sbjct: 72  KPDEHASWKKCNDMILSWILNSLSQDLADSVIFSTTAQEVWEDLRDRFSQSNAPRIFQIE 131

Query: 134 NSIATMSQGTMALSTYXXXXTMALSTYFTKLKALWDELEAYR-TPFTCNQRQIHIDQREE 193
             IA ++Q             M ++ Y+T+LK LWDEL +Y  T  +C          + 
Sbjct: 132 RDIACLTQ-----------DQMTVAAYYTRLKKLWDELGSYNDTVCSCGA------DHKR 191

Query: 194 DKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQV--TSEPTENFSIAS 253
            +LMQ LMGLN+SY  +R  IL+M+PLP+V +AYS +VQEE QR +  T E TEN   A 
Sbjct: 192 RRLMQFLMGLNESYNAIRGQILLMNPLPDVARAYSSIVQEEKQRSLGATRETTEN--SAM 251

Query: 254 AVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRC---------R 313
            VQ+    +   +     H   S    N       HC++CDR  H  + C          
Sbjct: 252 VVQRAEPMALAVR-----HGQGSSSRSNPSNRKPLHCSYCDRDHHVRETCWKLNGYPPEH 311

Query: 314 QKNNSGRTRQDNQH--NNRGYRSSAN 326
            K+   R+   N H   N  ++SSAN
Sbjct: 312 PKHALNRSNHGNTHFKRNNSHQSSAN 313

[Close]

BLAST of CmoCh04G000160 vs. TAIR10
Match: AT1G21280.1 (AT1G21280.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-24
Identity = 75/246 (30.49%), Postives = 123/246 (50.00%), Query Frame = 1


Query: 1   MAESAKSSFKISDVDLTHPYY----IHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAK 60
           MAE+ KS    SD D   PYY    IHH     +S+  +  +  NY +W       L   
Sbjct: 1   MAETIKSVSPTSDPD--SPYYLPPDIHHPSD--FSIQKLSKDEDNYVAWKIRFRSFLRVT 60

Query: 61  KKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVD 120
           KK GFIDGT+ +P  D  S  ++ W QCN+M++ WL +S+   + + +++A+TAH++W D
Sbjct: 61  KKFGFIDGTLPKP--DPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWED 120

Query: 121 LHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYXXXXTMALSTYFTKLKALWDELEAYRT 180
           L   F       I+Q++  +AT+ QG             ++  YF KL  +W EL  Y  
Sbjct: 121 LRRVFVPCVDLKIYQLRRRLATLRQG-----------GDSVEEYFGKLSKVWMELSEYAP 180

Query: 181 -------PFTCNQRQIHIDQREEDKLMQLLMG--LNQSYKTVRSNILMMSPLPNVRQAYS 234
                     C   +   + RE+++  + LMG  LNQ ++ V + I+   P P++ +A++
Sbjct: 181 IPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFA 229

[Close]

BLAST of CmoCh04G000160 vs. NCBI nr
Match: gi|147783627|emb|CAN68148.1| (hypothetical protein VITISV_035665 [Vitis vinifera])

HSP 1 Score: 471.9 bits (1213), Expect = 1.1e-129
Identity = 245/380 (64.47%), Postives = 294/380 (77.37%), Query Frame = 1


Query: 1   MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKI 60
           MA S K+S  +   +D +HP YIHHSDQPG+ LVPIKLNG NYQSWSK+V+HAL  KKKI
Sbjct: 283 MAGSQKASGSENKTIDPSHPLYIHHSDQPGHVLVPIKLNGVNYQSWSKAVIHALTTKKKI 342

Query: 61  GFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHD 120
           GF+DGT+EEPSQ+     FE WNQCNSMI+SWLTH+VE+DIA+GIIHAKTA +VWVDL D
Sbjct: 343 GFVDGTVEEPSQEDEPFMFEQWNQCNSMILSWLTHAVESDIAEGIIHAKTAREVWVDLRD 402

Query: 121 QFSQKNAPAIFQIQNSIATMSQGTMALSTYXXXXTMALSTYFTKLKALWDELEAYRTPFT 180
           QFSQKNAPA+FQIQ SIATMSQG           TM ++ YFTK+KALWDELE YR+P T
Sbjct: 403 QFSQKNAPAVFQIQKSIATMSQG-----------TMTVAAYFTKIKALWDELETYRSPLT 462

Query: 181 CNQRQIHIDQREEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVT 240
           CNQRQ H++QREED+LMQ LMGLN+SYK VRSNILMMSPLPNVRQAYSL+VQEEMQRQV+
Sbjct: 463 CNQRQAHLEQREEDRLMQFLMGLNESYKAVRSNILMMSPLPNVRQAYSLIVQEEMQRQVS 522

Query: 241 SEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDR 300
           SEPTENFSIA+AV  K       + K C+HCN+SGHTI+ECR LKFHC FCD+RGHTEDR
Sbjct: 523 SEPTENFSIAAAVPGK---GGNPRQKMCDHCNRSGHTIDECRTLKFHCKFCDKRGHTEDR 582

Query: 301 CRQKNNSGRTR---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQA 360
           CR KN S       +  +   RG + SAN A  SQ  ++  S +++  F++EQ++++AQA
Sbjct: 583 CRLKNGSNNKTGQFRGQRPFGRGNQPSAN-ATESQEMSDSTSSSTVQGFTTEQIQQLAQA 642

Query: 361 LSAINHHPSGNSDNHVNVAG 377
           + A+NH  SGN D + N AG
Sbjct: 643 IRALNHSNSGNIDAYANAAG 647

[Close]

BLAST of CmoCh04G000160 vs. NCBI nr
Match: gi|731437035|ref|XP_010647456.1| (PREDICTED: uncharacterized protein LOC104878585 [Vitis vinifera])

HSP 1 Score: 456.1 bits (1172), Expect = 6.3e-125
Identity = 241/380 (63.42%), Postives = 289/380 (76.05%), Query Frame = 1


Query: 1   MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKI 60
           MA S K+S  +   +D +HP YIHHSDQPG+ LVPIKLNG NYQSWSK+V+HALIAKK  
Sbjct: 1   MAGSQKASGSENKTIDSSHPLYIHHSDQPGHVLVPIKLNGVNYQSWSKAVIHALIAKK-- 60

Query: 61  GFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHD 120
               GT+EEPSQ+     FE WNQCNSMI+SWLTH+VE+DIA+GIIHAKTA +VWVDL D
Sbjct: 61  ----GTVEEPSQEDEPFMFEQWNQCNSMILSWLTHAVESDIAEGIIHAKTAREVWVDLRD 120

Query: 121 QFSQKNAPAIFQIQNSIATMSQGTMALSTYXXXXTMALSTYFTKLKALWDELEAYRTPFT 180
           QFSQKNAP +FQIQ SIATMSQG           TM ++ YFTK+KALWDELE YR+P T
Sbjct: 121 QFSQKNAPTVFQIQKSIATMSQG-----------TMTVAAYFTKIKALWDELETYRSPLT 180

Query: 181 CNQRQIHIDQREEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVT 240
           CNQRQ H++QREED+LMQ LMGLN+SYK VRSNILMMSPLPNVRQAYSL+VQEEMQRQV+
Sbjct: 181 CNQRQTHLEQREEDRLMQFLMGLNESYKAVRSNILMMSPLPNVRQAYSLIVQEEMQRQVS 240

Query: 241 SEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDR 300
           SEPTENFSIA+AV  K       + K C+HCN+SGHTI+ECR LKFHC FCD+RGHTEDR
Sbjct: 241 SEPTENFSIAAAVPGK---GGNPRQKMCDHCNRSGHTIDECRTLKFHCKFCDKRGHTEDR 300

Query: 301 CRQKNNSGRTR---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQA 360
           CR KN S       +  +   RG + SAN A  SQ  ++  S +++  F++EQ++++AQA
Sbjct: 301 CRLKNGSNNKMGQFRGQRPFGRGNQPSAN-ATESQEMSDSTSSSTVQGFTTEQIQQLAQA 359

Query: 361 LSAINHHPSGNSDNHVNVAG 377
           + A+NH  SGN D + N AG
Sbjct: 361 IRALNHSNSGNIDAYANAAG 359

[Close]

BLAST of CmoCh04G000160 vs. NCBI nr
Match: gi|645219735|ref|XP_008237098.1| (PREDICTED: uncharacterized protein LOC103335838 [Prunus mume])

HSP 1 Score: 421.4 bits (1082), Expect = 1.7e-114
Identity = 215/415 (51.81%), Postives = 287/415 (69.16%), Query Frame = 1


Query: 2   AESAKSSFKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGF 61
           ++++ ++ K   +D +HPY++H SD PG  LVPIKLNG NY SWSKS++HAL AK K+GF
Sbjct: 14  SKNSSTNTKNPGMDSSHPYFVHQSDHPGLMLVPIKLNGTNYPSWSKSMLHALTAKNKVGF 73

Query: 62  IDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQF 121
           ++G+++ PS+     E+ LWNQCNSMI+SWL HS+E D+AK ++HAKT +QVW D  DQF
Sbjct: 74  VNGSVQPPSETEQPAEYALWNQCNSMILSWLAHSMEPDLAKAVVHAKTVYQVWQDFKDQF 133

Query: 122 SQKNAPAIFQIQNSIATMSQGTMALSTYXXXXTMALSTYFTKLKALWDELEAYRTPFTCN 181
           SQKNAP I+QIQ SIA++SQG           TM +S Y+ KLK LWDELE Y+TP TCN
Sbjct: 134 SQKNAPTIYQIQKSIASLSQG-----------TMTVSDYYKKLKDLWDELETYQTPLTCN 193

Query: 182 QRQIHIDQREEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSE 241
           + + H  Q+E D++MQ LMGLN +Y  VR NILMMSPL NVRQAYSL+VQ+E QRQ+TS 
Sbjct: 194 EMKAHNTQKEADRMMQFLMGLNDTYNGVRGNILMMSPLTNVRQAYSLVVQDETQRQITSG 253

Query: 242 PTENFSIASAVQKKT-IYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRC 301
           PTENFSIA+A+  ++   S  + +K CEHC+++GHTI ECR LKFHC +CDRRGHTEDRC
Sbjct: 254 PTENFSIAAAIHSRSNNMSNNSMNKHCEHCDRNGHTIEECRTLKFHCKYCDRRGHTEDRC 313

Query: 302 RQKNNS-------------GRTRQDNQ----HNNRGYRSSANMADVSQLNTEE------- 361
           + KN +              +++Q  Q    HN+RG  S+A+ AD +  +  +       
Sbjct: 314 KFKNGTWVPNDTGIQGSKHNQSKQQRQGSKGHNSRGSFSTAHAADTAPAHEAQSYGFNAT 373

Query: 362 ----QSPNSIPNFSSEQLREIAQALSAINH-HPSGNSDNHVNVAGLGYGEDDWLG 387
                  N +  FS+EQL+++A A+S ++  H SGNS+ + N AG GYGEDDWLG
Sbjct: 374 TQPASQSNPLHGFSAEQLQQLAHAVSMMSSTHSSGNSNAYANAAGFGYGEDDWLG 417

[Close]

BLAST of CmoCh04G000160 vs. NCBI nr
Match: gi|802546646|ref|XP_012086161.1| (PREDICTED: uncharacterized protein LOC105645226 [Jatropha curcas])

HSP 1 Score: 411.0 bits (1055), Expect = 2.3e-111
Identity = 213/382 (55.76%), Postives = 284/382 (74.35%), Query Frame = 1


Query: 4   SAKSSFKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFID 63
           S + S K+  +D T+PYY+HHSDQPG+ LV  KLNG NYQSW  +++HAL AKKK+GF+D
Sbjct: 3   SEQESTKLVAMDSTNPYYVHHSDQPGHMLVSTKLNGVNYQSWKIAMIHALRAKKKLGFVD 62

Query: 64  GTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQ 123
           GT+E PS + N +EFELWNQCNS+I++WL+HS+E +IA   +HAKTA QVW DL DQF Q
Sbjct: 63  GTLEMPSPEKNPSEFELWNQCNSLILTWLSHSIEPEIAARTVHAKTARQVWEDLRDQFGQ 122

Query: 124 KNAPAIFQIQNSIATMSQGTMALSTYXXXXTMALSTYFTKLKALWDELEAYRTPFTCNQR 183
           KNAPAIF+IQ +IATMSQGTM++++Y           + KLKA WDE+E YR+P  CNQ 
Sbjct: 123 KNAPAIFRIQKAIATMSQGTMSVASY-----------YIKLKAFWDEIELYRSPIVCNQT 182

Query: 184 QIHIDQREEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPT 243
           + H  ++EEDKLMQ LMGLN S+KT RSNIL+M+PLPNVRQAYSL+VQEE Q+Q+ S+  
Sbjct: 183 KEHQIEKEEDKLMQFLMGLNDSFKTTRSNILVMNPLPNVRQAYSLVVQEETQQQMNSDHG 242

Query: 244 ENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQK 303
           ENFSIA+AVQ +T   K +K K CEHCN+SGHTI+ECR LK+HC  CD+ GHTEDRCR K
Sbjct: 243 ENFSIAAAVQGQTSNWKQSKSKFCEHCNRSGHTIDECRTLKYHCTHCDKDGHTEDRCRIK 302

Query: 304 ----NNSGRTRQD--NQHNNRGYRSSANMADVSQL--NTEEQSPNSIPNFSSEQLREIAQ 363
               +++GR  Q   ++ N +G   SANMA+ S++  ++ E + N +   ++EQ++++A+
Sbjct: 303 KGTWSSNGRNGQPQRSKKNLKGSYPSANMAESSRMPHDSNESNGNLVQGLTAEQIQQLAR 362

Query: 364 ALSAINHHPSGNSDNHVNVAGL 378
           A++ IN + S  S+  VN  GL
Sbjct: 363 AVALIN-NDSSKSEAFVNATGL 372

[Close]

BLAST of CmoCh04G000160 vs. NCBI nr
Match: gi|645260785|ref|XP_008235981.1| (PREDICTED: uncharacterized protein LOC103334794 [Prunus mume])

HSP 1 Score: 408.7 bits (1049), Expect = 1.1e-110
Identity = 210/406 (51.72%), Postives = 280/406 (68.97%), Query Frame = 1


Query: 2   AESAKSSFKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGF 61
           ++++ ++ K   +D +HPY++H SD PG  LVPIKLNG NY SWSKS++HAL AK K+GF
Sbjct: 14  SKNSSTNTKNPGMDSSHPYFVHQSDHPGLMLVPIKLNGTNYPSWSKSMLHALTAKNKVGF 73

Query: 62  IDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQF 121
           ++G+++ PS+     E+ LWNQCNSMI+SWL HSVE D+AK ++HAKT HQVW D  DQF
Sbjct: 74  VNGSVQPPSETEQPAEYALWNQCNSMILSWLAHSVEPDLAKAVVHAKTVHQVWQDFKDQF 133

Query: 122 SQKNAPAIFQIQNSIATMSQGTMALSTYXXXXTMALSTYFTKLKALWDELEAYRTPFTCN 181
           SQKNAP I+QIQ SIA++SQG           TM +S Y+ KLK LWDELE Y+TP TCN
Sbjct: 134 SQKNAPTIYQIQKSIASLSQG-----------TMTVSDYYKKLKDLWDELETYQTPLTCN 193

Query: 182 QRQIHIDQREEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSE 241
           + + H  Q+EED++MQ LMGLN +Y  VR NILMMSPLPNVRQAYSL+VQ+E QRQ+TS 
Sbjct: 194 EMKAHNTQKEEDRMMQFLMGLNDTYNGVRGNILMMSPLPNVRQAYSLVVQDETQRQITSG 253

Query: 242 PTENFSIASAVQKKT-IYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRC 301
           PTENFSIA+A+  ++   S  + +K CEHC+++GHTI ECR LKFHC +CDRRGHTEDRC
Sbjct: 254 PTENFSIAAAIHSRSNNMSNNSMNKHCEHCDRNGHTIEECRTLKFHCKYCDRRGHTEDRC 313

Query: 302 RQKNNS-------------GRTRQDNQ----HNNRGYRSSANMADVSQLNTEE------- 361
           + KN +              +++Q  Q    HN+RG  S+A+ AD +  +  +       
Sbjct: 314 KFKNGTWVPNDTGIQGSKHNQSKQQRQGSKGHNSRGSFSTAHAADTAPAHEAQSYGFNAT 373

Query: 362 ----QSPNSIPNFSSEQLREIAQALSAINH-HPSGNSDNHVNVAGL 378
                  N +   S+EQL+++A A+S ++  H SGNS+ + N AGL
Sbjct: 374 TQPASQSNPLHGLSAEQLQQLAHAVSMMSSTHSSGNSNAYANAAGL 408

The following BLAST results are available for this feature:

BLAST of CmoCh04G000160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G000160 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BNR5_VITVI	7.7e-130	64.47	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1	[more]
A5AWA1_VITVI	2.2e-52	42.97	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043610 PE=4 SV=1	[more]
A5BVX7_VITVI	1.2e-50	36.29	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044218 PE=4 SV=1	[more]
A5BLV0_VITVI	1.6e-50	35.98	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033389 PE=4 SV=1	[more]
A5BJ98_VITVI	1.8e-49	38.96	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009790 PE=4 SV=1	[more]

BLAST of CmoCh04G000160 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21280.1	1.3e-24	30.49	Retrotransposon gag protein (InterPro:IPR005162)	[more]

BLAST of CmoCh04G000160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147783627\|emb\|CAN68148.1\|	1.1e-129	64.47	hypothetical protein VITISV_035665 [Vitis vinifera]	[more]
gi\|731437035\|ref\|XP_010647456.1\|	6.3e-125	63.42	PREDICTED: uncharacterized protein LOC104878585 [Vitis vinifera]	[more]
gi\|645219735\|ref\|XP_008237098.1\|	1.7e-114	51.81	PREDICTED: uncharacterized protein LOC103335838 [Prunus mume]	[more]
gi\|802546646\|ref\|XP_012086161.1\|	2.3e-111	55.76	PREDICTED: uncharacterized protein LOC105645226 [Jatropha curcas]	[more]
gi\|645260785\|ref\|XP_008235981.1\|	1.1e-110	51.72	PREDICTED: uncharacterized protein LOC103334794 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G000160.1	CmoCh04G000160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 262..303 score: 5.
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 262..304 score: 1.1
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 1..146 score: 9.2
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 81..237 score: 9.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G000160	Cucumber (Chinese Long) v3	cmocucB0862
CmoCh04G000160	Watermelon (97103) v2	cmowmbB703
CmoCh04G000160	Wax gourd	cmowgoB0898
CmoCh04G000160	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G000160	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G000160	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G000160	Wild cucumber (PI 183967)	cmocpiB760
CmoCh04G000160	Wild cucumber (PI 183967)	cmocpiB743
CmoCh04G000160	Cucumber (Chinese Long) v2	cmocuB756
CmoCh04G000160	Melon (DHL92) v3.5.1	cmomeB657
CmoCh04G000160	Watermelon (Charleston Gray)	cmowcgB627
CmoCh04G000160	Watermelon (97103) v1	cmowmB736
CmoCh04G000160	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G000160	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G000160	Bottle gourd (USVL1VR-Ls)	cmolsiB622
CmoCh04G000160	Cucumber (Gy14) v2	cgybcmoB641
CmoCh04G000160	Melon (DHL92) v3.6.1	cmomedB731
CmoCh04G000160	Silver-seed gourd	carcmoB0924