CmoCh03G012700 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCTTCTTCTTCTTCTTCTTCTTCAAGCTAAAGCTCTTCTCTTTGCTTTAGAATCTGGTAAATGATAAAAAGGGTTGATCCATAATGGCTTCAGCTTCCCGGATTATGGACAAACCCCGTCAAGAACAACAACAGCAGCAGCAGCAACAACGACCACCGGTAGCATCTGCTCTTAAGTGCCCTCGTTGTGATTCTTCCAACACCAAATTTTGTTACTACAACAATTACAGCCTCTCTCAGCCACGGCACTTCTGCAAAGCCTGTAAACGCTACTGGACCCGCGGCGGAACCCTAAGAAATGTCCCCGTCGGTGGTGGCTGCCGGAAGAACAAGCGCCTCAAATCTTCTTCTTCTTCTTCCTTCTCCTCAGTCAACGCTACTCCCACGTCAACCCCAACTCAAAAACCTCGCCTTCACAACAACTCCATCATCAATTCTGCTACTAATATTATTCCTTCTTCCCGAATGTTTTTTGGGGTTCATAACACTAACCCATCTCCCTTAAATCTTCAATTTTCAACTCTTGATTCTGTTTCTGGTCTTCTCAACCTTTCCCCGCCACCGCCGTTCGACGCCATTGGCAGTGGTTTAGGGTTTTCCCACATAGGTGATCTCCGTGAAACCTTCAATTCCCCTAAGAAAATTCAAGATATTTCAATTCATGCAACTCACTTCCATCCTCCCGCCATCTCATTCGATCGAAATTCGCAGCTTTTCGGTAATTTCGAAGCTGGTTTGATGAAGGAAGACTTGAACAGGTAAATCACCGTTGAACTCAAAAGTTTAAATTGATAGATTGAACGTATAAAAATTAATCATTTGTTCGCATTGACTTAATAGGCTGTCCCATAATCAAACCGAGCAAGTCGATCCATCAAATTTTTCCGACTCTTCTCGGTTCTGGAACTCGGCAACCACGGCGACGAGCAATTGGCATGATCCGACGAATAATGGGTCCTCAATTGCTTCTCTATTCTAGGAGATCAAAGCATTGGGTGTCTATATAAGAAAAGACAAAGAATAAAGTTGAGGAGAGGAGTGGGATCGGAGAGATCATGTCAGCTGCAAGAACAGCTCAAACCCTTAAACTTTATCGATGTGGGTTTGAGAATTTTATAGGTAATTGCGCTGAGAGGAACCTCGGATCCTCTTTCATTCGTCGCTATAATACCATCCTATCAACAATTTAGAATTTGGATTAATCTCACCTACGCATGGACTTACATGCATGTATTCAAAGGATCGGATACGTTTTTCTTTTCTTTTCTTTTTTTCTTTTCTTTTTTTTTTTTTTCGTGGGTATGTATAGCTAAGGGTATAGGAAGAAATCAGTGGAA TTCTTCTTCTTCTTCTTCTTCTTCAAGCTAAAGCTCTTCTCTTTGCTTTAGAATCTGGTAAATGATAAAAAGGGTTGATCCATAATGGCTTCAGCTTCCCGGATTATGGACAAACCCCGTCAAGAACAACAACAGCAGCAGCAGCAACAACGACCACCGGTAGCATCTGCTCTTAAGTGCCCTCGTTGTGATTCTTCCAACACCAAATTTTGTTACTACAACAATTACAGCCTCTCTCAGCCACGGCACTTCTGCAAAGCCTGTAAACGCTACTGGACCCGCGGCGGAACCCTAAGAAATGTCCCCGTCGGTGGTGGCTGCCGGAAGAACAAGCGCCTCAAATCTTCTTCTTCTTCTTCCTTCTCCTCAGTCAACGCTACTCCCACGTCAACCCCAACTCAAAAACCTCGCCTTCACAACAACTCCATCATCAATTCTGCTACTAATATTATTCCTTCTTCCCGAATGTTTTTTGGGGTTCATAACACTAACCCATCTCCCTTAAATCTTCAATTTTCAACTCTTGATTCTGTTTCTGGTCTTCTCAACCTTTCCCCGCCACCGCCGTTCGACGCCATTGGCAGTGGTTTAGGGTTTTCCCACATAGGTGATCTCCGTGAAACCTTCAATTCCCCTAAGAAAATTCAAGATATTTCAATTCATGCAACTCACTTCCATCCTCCCGCCATCTCATTCGATCGAAATTCGCAGCTTTTCGGTAATTTCGAAGCTGGTTTGATGAAGGAAGACTTGAACAGGCTGTCCCATAATCAAACCGAGCAAGTCGATCCATCAAATTTTTCCGACTCTTCTCGGTTCTGGAACTCGGCAACCACGGCGACGAGCAATTGGCATGATCCGACGAATAATGGGTCCTCAATTGCTTCTCTATTCTAGGAGATCAAAGCATTGGGTGTCTATATAAGAAAAGACAAAGAATAAAGTTGAGGAGAGGAGTGGGATCGGAGAGATCATGTCAGCTGCAAGAACAGCTCAAACCCTTAAACTTTATCGATGTGGGTTTGAGAATTTTATAGGTAATTGCGCTGAGAGGAACCTCGGATCCTCTTTCATTCGTCGCTATAATACCATCCTATCAACAATTTAGAATTTGGATTAATCTCACCTACGCATGGACTTACATGCATGTATTCAAAGGATCGGATACGTTTTTCTTTTCTTTTCTTTTTTTCTTTTCTTTTTTTTTTTTTTCGTGGGTATGTATAGCTAAGGGTATAGGAAGAAATCAGTGGAA ATGGCTTCAGCTTCCCGGATTATGGACAAACCCCGTCAAGAACAACAACAGCAGCAGCAGCAACAACGACCACCGGTAGCATCTGCTCTTAAGTGCCCTCGTTGTGATTCTTCCAACACCAAATTTTGTTACTACAACAATTACAGCCTCTCTCAGCCACGGCACTTCTGCAAAGCCTGTAAACGCTACTGGACCCGCGGCGGAACCCTAAGAAATGTCCCCGTCGGTGGTGGCTGCCGGAAGAACAAGCGCCTCAAATCTTCTTCTTCTTCTTCCTTCTCCTCAGTCAACGCTACTCCCACGTCAACCCCAACTCAAAAACCTCGCCTTCACAACAACTCCATCATCAATTCTGCTACTAATATTATTCCTTCTTCCCGAATGTTTTTTGGGGTTCATAACACTAACCCATCTCCCTTAAATCTTCAATTTTCAACTCTTGATTCTGTTTCTGGTCTTCTCAACCTTTCCCCGCCACCGCCGTTCGACGCCATTGGCAGTGGTTTAGGGTTTTCCCACATAGGTGATCTCCGTGAAACCTTCAATTCCCCTAAGAAAATTCAAGATATTTCAATTCATGCAACTCACTTCCATCCTCCCGCCATCTCATTCGATCGAAATTCGCAGCTTTTCGGTAATTTCGAAGCTGGTTTGATGAAGGAAGACTTGAACAGGCTGTCCCATAATCAAACCGAGCAAGTCGATCCATCAAATTTTTCCGACTCTTCTCGGTTCTGGAACTCGGCAACCACGGCGACGAGCAATTGGCATGATCCGACGAATAATGGGTCCTCAATTGCTTCTCTATTCTAG
BLAST of CmoCh03G012700 vs. Swiss-Prot
Match: DOF14_ARATH (Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4 PE=2 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 4.8e-31 Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 1
BLAST of CmoCh03G012700 vs. Swiss-Prot
Match: DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 7.7e-29 Identity = 79/182 (43.41%), Postives = 106/182 (58.24%), Query Frame = 1
BLAST of CmoCh03G012700 vs. Swiss-Prot
Match: DOF11_ARATH (Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1 PE=1 SV=2) HSP 1 Score: 126.3 bits (316), Expect = 5.0e-28 Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 1
BLAST of CmoCh03G012700 vs. Swiss-Prot
Match: PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 6.5e-28 Identity = 64/114 (56.14%), Postives = 79/114 (69.30%), Query Frame = 1
BLAST of CmoCh03G012700 vs. Swiss-Prot
Match: DOF36_ARATH (Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2) HSP 1 Score: 125.9 bits (315), Expect = 6.5e-28 Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 1
BLAST of CmoCh03G012700 vs. TrEMBL
Match: A0A0A0KI37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517950 PE=4 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 1.2e-68 Identity = 172/283 (60.78%), Postives = 190/283 (67.14%), Query Frame = 1
BLAST of CmoCh03G012700 vs. TrEMBL
Match: B9N3H4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05450g PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 5.2e-40 Identity = 101/196 (51.53%), Postives = 131/196 (66.84%), Query Frame = 1
BLAST of CmoCh03G012700 vs. TrEMBL
Match: A0A061GGE9_THECC (F-box family protein, putative OS=Theobroma cacao GN=TCM_029834 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 6.7e-40 Identity = 113/209 (54.07%), Postives = 141/209 (67.46%), Query Frame = 1
BLAST of CmoCh03G012700 vs. TrEMBL
Match: A0A067GDE2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041099mg PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 3.3e-39 Identity = 128/286 (44.76%), Postives = 169/286 (59.09%), Query Frame = 1
BLAST of CmoCh03G012700 vs. TrEMBL
Match: F6HM25_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00040 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 4.4e-39 Identity = 132/306 (43.14%), Postives = 162/306 (52.94%), Query Frame = 1
BLAST of CmoCh03G012700 vs. TAIR10
Match: AT1G28310.2 (AT1G28310.2 Dof-type zinc finger DNA-binding family protein) HSP 1 Score: 136.3 bits (342), Expect = 2.7e-32 Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 1
BLAST of CmoCh03G012700 vs. TAIR10
Match: AT5G60200.1 (AT5G60200.1 TARGET OF MONOPTEROS 6) HSP 1 Score: 129.0 bits (323), Expect = 4.3e-30 Identity = 79/182 (43.41%), Postives = 106/182 (58.24%), Query Frame = 1
BLAST of CmoCh03G012700 vs. TAIR10
Match: AT1G07640.3 (AT1G07640.3 Dof-type zinc finger DNA-binding family protein) HSP 1 Score: 126.3 bits (316), Expect = 2.8e-29 Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 1
BLAST of CmoCh03G012700 vs. TAIR10
Match: AT3G55370.3 (AT3G55370.3 OBF-binding protein 3) HSP 1 Score: 125.9 bits (315), Expect = 3.7e-29 Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 1
BLAST of CmoCh03G012700 vs. TAIR10
Match: AT2G37590.1 (AT2G37590.1 DNA binding with one finger 2.4) HSP 1 Score: 124.4 bits (311), Expect = 1.1e-28 Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 1
BLAST of CmoCh03G012700 vs. NCBI nr
Match: gi|659078663|ref|XP_008439843.1| (PREDICTED: dof zinc finger protein DOF1.7-like [Cucumis melo]) HSP 1 Score: 279.6 bits (714), Expect = 5.6e-72 Identity = 174/283 (61.48%), Postives = 193/283 (68.20%), Query Frame = 1
BLAST of CmoCh03G012700 vs. NCBI nr
Match: gi|449433826|ref|XP_004134698.1| (PREDICTED: dof zinc finger protein DOF1.4 [Cucumis sativus]) HSP 1 Score: 268.1 bits (684), Expect = 1.7e-68 Identity = 172/283 (60.78%), Postives = 190/283 (67.14%), Query Frame = 1
BLAST of CmoCh03G012700 vs. NCBI nr
Match: gi|802786262|ref|XP_012091631.1| (PREDICTED: dof zinc finger protein DOF1.4 isoform X2 [Jatropha curcas]) HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43 Identity = 130/312 (41.67%), Postives = 174/312 (55.77%), Query Frame = 1
BLAST of CmoCh03G012700 vs. NCBI nr
Match: gi|743900230|ref|XP_011043409.1| (PREDICTED: dof zinc finger protein DOF1.4-like [Populus euphratica]) HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41 Identity = 124/328 (37.80%), Postives = 167/328 (50.91%), Query Frame = 1
BLAST of CmoCh03G012700 vs. NCBI nr
Match: gi|1009109585|ref|XP_015890946.1| (PREDICTED: dof zinc finger protein DOF1.4-like [Ziziphus jujuba]) HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41 Identity = 131/343 (38.19%), Postives = 164/343 (47.81%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |