CmoCh03G012160 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G012160
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRotundifolia-like protein
LocationCmo_Chr03 : 9429799 .. 9432704 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGAGTGAAGGAAAAGAGTGGGAATTCGAGCAGTTTGAGACGAATTGGGGAATACCCATGTGATCCTTGTTCATCTTTTGGCCAAAAGTGCAGCAATTTGGTGAAGAAACAACGCACTAAATTCTACATCCTCCGCCGCTGTGTGGCTTTGCTTCTCTGCTCGCATGAGCGTGGCGACCCTTGATATCACACACACAAGCCTCCGCCACCGCCACTGCCACCGCCTCTGCTTTTGTTGCGCCAACGCCGGTGTGCTTCTTTTCTTTGAACTTCATTTTGTTTATAGGAGATCTTAATAACATCTCTCTGTTCATGACTCTTTCTTGAGTTCGAATTGAAGCCATTTTTGTTGTTCTAACCGAGTTATAGAGAGATTTCATGATTAGAACGATGCATTTAGGTGAGAAATTCAAACTTTTGATCGCTTAATTGAGAGCATATGTCTAAACGAATTGAGTTTGGCTCGTATTAACACCAAATTTTACAAACAATATACTTCTATTTTTTTTTTGGTTAAGAAAGCAAGGTACAATTTTAATATAGATATAGCTTACTATGTTAATAAATTTTAAATGGGCTAATTAAAGAGATAAGGTCAGATCAAGTTCAAATATCGATCCTGTCAAATTTAAGATATAATTTATCATATGGAGTATGATATATCGAAATTGTTTAATTAACTCTTTAAAACTTACTTGAGATATAATGTTCTAAAAATGAATAATCTATATTTTTTTTTTTAAGAATACAACGTTCTACAAAGATTACATGTTTTTTTAATAAACCCATAAATCAAATTCATTAAATTCAACAAAGTCGTAAGTATCCACATGATTTGTCAATTCAATCCTAAAGTGAACATGAGACAAGACACAAGCACCCAATGTTTGTATTATTATTTGTGCGTTTTCTTAATAATATAAAATTTGATCGTATCTTTTTATTTGTATATCGATGGTATAAATTTTAACGAAAAAGTAATCATTTTTAATATATATTTTTTTTTATAACAAATGATATATCACTGGACCTTGAACATTTAACGTAATAGAAATAAGTAAGTACCTACATTTTTTATTAAATTTTTGCAAGAAATTAAAATATTTCTTGAAAATCAAGATTTAGTCGTTGTTTCCAAGTGGAGCCAACATCAAACTGTGGGGAAGAACAAGACCAATGGATTACGCTATTTAGGGCCTAAAGATAAAAGCTAAGATCTCAACTAGATTCGTTTCCATCGGCTCTTTTGTTTTATAACATATGAGATATGGAATTGAATATGGAATGTGAAAGAAAGAAATAAGTATACATCAATTACTGCTAATGAGCTAGGCTAGAGAGAGAAAGAGGGAGAGAGAGAGAAAAGGGAGGCAAAGGAGTGGGTACGATCAGCTGCAGCTTCTTCTGATTTTCAGAGACCCCTCGTGCGGCCCTCCCTCTCCTCTTTTTTCTTTCCTGCTTTGCTTTTCAATCATTTCAAATTAGGGTTTCACTTCAAAATCCTACCTTTCCTGCTGGTTTCCATGGCTTCCGAGTTAGGGTTTTGTATTCCTACTCTTCTCATCCCCTTAAATTACAAATTTAATTCTTCCTTTTATAAACTTTATTAGAGAATAAATAATCAAAAAATAGTTATCTCAAATTAAAAATAACGTAGGTATATAATTGTATCCAATTTTTTATAAAACCAATAACAAATTTGTGTTGGTTCTGTTCAACTTAGTCAAAATTTATAAAGCTTGAATTCAATCTAAATAAGTATATAATCCAACTAGATTGGGTTAGGTTGATCAGTTTTTCAGATCATCTGATCTTTTGAACATTCCTACTCGAAAGGTTAACTACATATGGGTCTAATTAGCACTTAAACAAAATCAATAATCAATAATTTAATGTGTAATTTATTTGTATATATTAATATCTATTATTATTATGAATAGGATTGGATGTCCCAACAAAAAAAAACATAAAATTTACCAATTTTAAGGAACATGAATCTCAAAGTTTCTCTGTTCTGTTGACACACAAATTATTAAGTTGACTCGTTCCCTAACACACTAACAATTTCATATGAATCTCAAACATCCCACATTTAATCTTTAACTTTTCGATCTTGTTTTTCAATTATTTTCATCATGGTCCCTTGAGTTTTAGTCATTTTGAATCCTTTCCCTCCTTTTGTTTTCTTTTTTCTTTTTGGTCCCTACCCTTGTCACTCTCAATCTACTTTACTCCCCTCCACTTAGACATCGGAGAGACATGTCTTTGTCCTATCAATGTTCTTGTTTGTAATTCTTTCTTCAAGGATGTTTTTTTTTTCAATATTGTTCTCCACTCATATCTTGAAAATTATACTTGGTGAGATGGAGTAAAATTTGTGTGGTGCAATGGAGTATAATTTTGTGTGGTGAAGGCTCCCGTAATCCCATCTAATACGTGGCGGGTAGAGACATGATCCTATTTGATATGTAGTTGGTAGAAACATGAGAAAAAACTCTGCAAAAACCGTAATGCATCTTTTGATTCTACTCGACTTTCTCTTTGAGCTACAGCTCCAGCAAAACGGTCAACTAAGTGTGAACAATAAGAATGGACTAAAGCATCTCGGACTTTCTTAGAAAGAAAAGTTGCCACGGATAAGGCTTTAAAAGTCCTGCACTTAGTTAAGTAGTAGAGGCCAAACAGCAGTCCTATGGTGTTCTGAAGTTATCCATTTTTAAAGCAGTAACAGGAAATAACCAACTGATATGTCTACATTATAGGCAAGTATCACTACCCAAGGAGGCGCCCTGAAGCCATCTTTGGAACCGAACACCCCTCCAACTGAAGGCTCCTTCTTCCCCCACAGATCTTTCTATGAGAAACGGACACAAATTTGCAGTGTTAGAAGAACTGTTCTAA

mRNA sequence

ATGGAAGGAGTGAAGGAAAAGAGTGGGAATTCGAGCAGTTTGAGACGAATTGGGGAATACCCATGTGATCCTTGTTCATCTTTTGGCCAAAAGTGCAGCAATTTGGTGAAGAAACAACGCACTAAATTCTACATCCTCCGCCGCTGTGTGGCTTTGCTTCTCTGCTCGCATGAGCTAGAGGCCAAACAGCAGTCCTATGGTGTTCTGAAGTTATCCATTTTTAAAGCAGTAACAGGAAATAACCAACTGATATGTCTACATTATAGGCAAGCTCCTTCTTCCCCCACAGATCTTTCTATGAGAAACGGACACAAATTTGCAGTGTTAGAAGAACTGTTCTAA

Coding sequence (CDS)

ATGGAAGGAGTGAAGGAAAAGAGTGGGAATTCGAGCAGTTTGAGACGAATTGGGGAATACCCATGTGATCCTTGTTCATCTTTTGGCCAAAAGTGCAGCAATTTGGTGAAGAAACAACGCACTAAATTCTACATCCTCCGCCGCTGTGTGGCTTTGCTTCTCTGCTCGCATGAGCTAGAGGCCAAACAGCAGTCCTATGGTGTTCTGAAGTTATCCATTTTTAAAGCAGTAACAGGAAATAACCAACTGATATGTCTACATTATAGGCAAGCTCCTTCTTCCCCCACAGATCTTTCTATGAGAAACGGACACAAATTTGCAGTGTTAGAAGAACTGTTCTAA
Homology
[Close]
BLAST of CmoCh03G012160 vs. TrEMBL
Match: A0A151TV07_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_010133 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 7  KSGNSSSLRRIGEYPCDPCSSFGQKCSNLVKKQRTKFYILRRCVALLLCSHE 59
          K  N+S      +  CDPC SFGQKCS+LVKKQR KFYILRRC+A+LLC HE
Sbjct: 23 KESNTSQKNHQQQEACDPCKSFGQKCSHLVKKQRAKFYILRRCIAMLLCWHE 74

[Close]
BLAST of CmoCh03G012160 vs. TrEMBL
Match: K7LZR1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G143700 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 4  VKEKSGNSSSLRRIGEYPCDPCSSFGQKCSNLVKKQRTKFYILRRCVALLLCSHE 59
          V+E + + S+ ++     CDPC SFGQKCS LVKKQR KFYILRRCVA+LLC HE
Sbjct: 3  VQESNTSQSNHQQQQHQNCDPCKSFGQKCSQLVKKQRAKFYILRRCVAMLLCWHE 57

[Close]
BLAST of CmoCh03G012160 vs. TrEMBL
Match: G7L3V3_MEDTR (DVL family protein OS=Medicago truncatula GN=MTR_7g101850 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.0e-11
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 22 CDPCSSFGQKCSNLVKKQRTKFYILRRCVALLLCSHE 59
          CDPC SFGQKCS+LVKKQR KFYILRRC+A+LLC HE
Sbjct: 24 CDPCKSFGQKCSHLVKKQRAKFYILRRCIAMLLCHHE 60

[Close]
BLAST of CmoCh03G012160 vs. TrEMBL
Match: K7LHN6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G057200 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-10
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 22 CDPCSSFGQKCSNLVKKQRTKFYILRRCVALLLCSHE 59
          CDPC SFGQKCS+LVKKQR KFYILRRCVA+LLC HE
Sbjct: 22 CDPCKSFGQKCSHLVKKQRAKFYILRRCVAMLLCWHE 58

[Close]
BLAST of CmoCh03G012160 vs. TrEMBL
Match: A0A151S2V1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_029099 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 5  KEKSGNSSSLRRIGEYPCDPCSSFGQKCSNLVKKQRTKFYILRRCVALLLCSHE 59
          +  +  SS+ ++  +  CDPC SFG+KCS+LVKKQR KFYILRRCVA+LLC HE
Sbjct: 5  ESNTSQSSNHQQQQQQVCDPCKSFGKKCSHLVKKQRAKFYILRRCVAMLLCWHE 58

[Close]
BLAST of CmoCh03G012160 vs. TAIR10
Match: AT2G36985.1 (AT2G36985.1 DVL family protein)

HSP 1 Score: 67.8 bits (164), Expect = 4.9e-12
Identity = 26/37 (70.27%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 22 CDPCSSFGQKCSNLVKKQRTKFYILRRCVALLLCSHE 59
          C+PC +FGQKCS++VKKQR KFYILRRC+A+L+C H+
Sbjct: 9  CEPCKTFGQKCSHVVKKQRAKFYILRRCIAMLVCWHD 45

[Close]
BLAST of CmoCh03G012160 vs. TAIR10
Match: AT3G53232.1 (AT3G53232.1 ROTUNDIFOLIA like 1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 1 

Query: 22 CDPCSSFGQKCSNLVKKQRTKFYILRRCVALLLC 56
          C P  +F  KCS++V+KQR KFYIL RC+A+L+C
Sbjct: 11 CKPSKTFKAKCSHMVRKQRAKFYILGRCLAMLVC 44

[Close]
BLAST of CmoCh03G012160 vs. NCBI nr
Match: gi|778717178|ref|XP_011657662.1| (PREDICTED: uncharacterized protein LOC105435882 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 9.4e-13
Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 1 

Query: 3  GVKEKSGNSSSLRRIG---EYPCDPCSSFGQKCSNLVKKQRTKFYILRRCVALLLCSHE 59
          G K  + NSS+L +I    EYP    SSFGQKCSNLVKKQRTKFYILRRCVALLLCSH+
Sbjct: 13 GRKNSNSNSSNLSKIEIGEEYPNSSSSSFGQKCSNLVKKQRTKFYILRRCVALLLCSHD 71

[Close]
BLAST of CmoCh03G012160 vs. NCBI nr
Match: gi|1012359709|gb|KYP70893.1| (hypothetical protein KK1_010133 [Cajanus cajan])

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 7  KSGNSSSLRRIGEYPCDPCSSFGQKCSNLVKKQRTKFYILRRCVALLLCSHE 59
          K  N+S      +  CDPC SFGQKCS+LVKKQR KFYILRRC+A+LLC HE
Sbjct: 23 KESNTSQKNHQQQEACDPCKSFGQKCSHLVKKQRAKFYILRRCIAMLLCWHE 74

[Close]
BLAST of CmoCh03G012160 vs. NCBI nr
Match: gi|947071026|gb|KRH19917.1| (hypothetical protein GLYMA_13G143700 [Glycine max])

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 4  VKEKSGNSSSLRRIGEYPCDPCSSFGQKCSNLVKKQRTKFYILRRCVALLLCSHE 59
          V+E + + S+ ++     CDPC SFGQKCS LVKKQR KFYILRRCVA+LLC HE
Sbjct: 3  VQESNTSQSNHQQQQHQNCDPCKSFGQKCSQLVKKQRAKFYILRRCVAMLLCWHE 57

[Close]
BLAST of CmoCh03G012160 vs. NCBI nr
Match: gi|659125016|ref|XP_008462465.1| (PREDICTED: uncharacterized protein LOC103500815 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 5.2e-11
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 1  MEGVKEKSGNS------------SSLRRIG---EYPCDPCSSFGQKCSNLVKKQRTKFYI 59
          MEGVK++  +S            S+L +I    EYP    SSFG+KCSNLVKKQRTKFYI
Sbjct: 1  MEGVKKEKKSSGKKYSNSNSNYCSNLSKIEIGEEYPNSSSSSFGRKCSNLVKKQRTKFYI 60

[Close]
BLAST of CmoCh03G012160 vs. NCBI nr
Match: gi|1012188654|ref|XP_015970108.1| (PREDICTED: uncharacterized protein LOC107493533 [Arachis duranensis])

HSP 1 Score: 75.5 bits (184), Expect = 6.7e-11
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1 

Query: 8  SGNSSSLRRIGEYPCDPCSSFGQKCSNLVKKQRTKFYILRRCVALLLCSHE 59
          +  SS+ ++  +  CDPC SFGQKCS+LVKKQR KFYILRRCVA+LLC HE
Sbjct: 17 NNTSSNQQKQEQEGCDPCKSFGQKCSHLVKKQRAKFYILRRCVAMLLCWHE 67

The following BLAST results are available for this feature:
BLAST of CmoCh03G012160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh03G012160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151TV07_CAJCA2.1e-1165.38Uncharacterized protein OS=Cajanus cajan GN=KK1_010133 PE=4 SV=1[more]
K7LZR1_SOYBN2.7e-1163.64Uncharacterized protein OS=Glycine max GN=GLYMA_13G143700 PE=4 SV=1[more]
G7L3V3_MEDTR8.0e-1183.78DVL family protein OS=Medicago truncatula GN=MTR_7g101850 PE=4 SV=1[more]
K7LHN6_SOYBN1.0e-1086.49Uncharacterized protein OS=Glycine max GN=GLYMA_10G057200 PE=4 SV=1[more]
A0A151S2V1_CAJCA1.4e-1061.11Uncharacterized protein OS=Cajanus cajan GN=KK1_029099 PE=4 SV=1[more]
BLAST of CmoCh03G012160 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G36985.14.9e-1270.27 DVL family protein[more]
AT3G53232.11.1e-0658.82 ROTUNDIFOLIA like 1[more]
BLAST of CmoCh03G012160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778717178|ref|XP_011657662.1|9.4e-1371.19PREDICTED: uncharacterized protein LOC105435882 [Cucumis sativus][more]
gi|1012359709|gb|KYP70893.1|3.0e-1165.38hypothetical protein KK1_010133 [Cajanus cajan][more]
gi|947071026|gb|KRH19917.1|3.9e-1163.64hypothetical protein GLYMA_13G143700 [Glycine max][more]
gi|659125016|ref|XP_008462465.1|5.2e-1158.90PREDICTED: uncharacterized protein LOC103500815 [Cucumis melo][more]
gi|1012188654|ref|XP_015970108.1|6.7e-1166.67PREDICTED: uncharacterized protein LOC107493533 [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042127 regulation of cell proliferation
biological_process GO:0048367 shoot system development
biological_process GO:0008150 biological_process
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G012160.1CmoCh03G012160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 37..55
score: 1.
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 22..90
score: 8.0
NoneNo IPR availablePANTHERPTHR33102:SF8SUBFAMILY NOT NAMEDcoord: 22..90
score: 8.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G012160Cucsa.124620Cucumber (Gy14) v1cgycmoB0324
CmoCh03G012160CmaCh03G012170Cucurbita maxima (Rimu)cmacmoB653
CmoCh03G012160CmaCh06G003860Cucurbita maxima (Rimu)cmacmoB827
CmoCh03G012160Cla017809Watermelon (97103) v1cmowmB606
CmoCh03G012160ClCG04G009250Watermelon (Charleston Gray)cmowcgB589
CmoCh03G012160CsaV3_6G039840Cucumber (Chinese Long) v3cmocucB0794
CmoCh03G012160Cla97C04G075980Watermelon (97103) v2cmowmbB662
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G012160Wax gourdcmowgoB0764
CmoCh03G012160Wax gourdcmowgoB0783
CmoCh03G012160Cucurbita moschata (Rifu)cmocmoB217
CmoCh03G012160Cucurbita moschata (Rifu)cmocmoB419
CmoCh03G012160Cucurbita moschata (Rifu)cmocmoB454
CmoCh03G012160Cucurbita moschata (Rifu)cmocmoB455
CmoCh03G012160Cucumber (Gy14) v1cgycmoB0841
CmoCh03G012160Cucumber (Gy14) v1cgycmoB1069
CmoCh03G012160Cucurbita maxima (Rimu)cmacmoB263
CmoCh03G012160Cucurbita maxima (Rimu)cmacmoB858
CmoCh03G012160Wild cucumber (PI 183967)cmocpiB660
CmoCh03G012160Wild cucumber (PI 183967)cmocpiB681
CmoCh03G012160Wild cucumber (PI 183967)cmocpiB683
CmoCh03G012160Cucumber (Chinese Long) v2cmocuB649
CmoCh03G012160Cucumber (Chinese Long) v2cmocuB670
CmoCh03G012160Cucumber (Chinese Long) v2cmocuB672
CmoCh03G012160Melon (DHL92) v3.5.1cmomeB591
CmoCh03G012160Melon (DHL92) v3.5.1cmomeB585
CmoCh03G012160Melon (DHL92) v3.5.1cmomeB598
CmoCh03G012160Watermelon (Charleston Gray)cmowcgB570
CmoCh03G012160Watermelon (Charleston Gray)cmowcgB580
CmoCh03G012160Watermelon (97103) v1cmowmB612
CmoCh03G012160Watermelon (97103) v1cmowmB632
CmoCh03G012160Watermelon (97103) v1cmowmB639
CmoCh03G012160Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G012160Cucurbita pepo (Zucchini)cmocpeB610
CmoCh03G012160Cucurbita pepo (Zucchini)cmocpeB615
CmoCh03G012160Cucurbita pepo (Zucchini)cmocpeB624
CmoCh03G012160Cucurbita pepo (Zucchini)cmocpeB635
CmoCh03G012160Cucurbita pepo (Zucchini)cmocpeB642
CmoCh03G012160Bottle gourd (USVL1VR-Ls)cmolsiB575
CmoCh03G012160Bottle gourd (USVL1VR-Ls)cmolsiB582
CmoCh03G012160Bottle gourd (USVL1VR-Ls)cmolsiB597
CmoCh03G012160Cucumber (Gy14) v2cgybcmoB382
CmoCh03G012160Cucumber (Gy14) v2cgybcmoB811
CmoCh03G012160Cucumber (Gy14) v2cgybcmoB813
CmoCh03G012160Melon (DHL92) v3.6.1cmomedB665
CmoCh03G012160Melon (DHL92) v3.6.1cmomedB676
CmoCh03G012160Melon (DHL92) v3.6.1cmomedB687
CmoCh03G012160Silver-seed gourdcarcmoB0220
CmoCh03G012160Silver-seed gourdcarcmoB0336
CmoCh03G012160Silver-seed gourdcarcmoB0349
CmoCh03G012160Cucumber (Chinese Long) v3cmocucB0772
CmoCh03G012160Cucumber (Chinese Long) v3cmocucB0796
CmoCh03G012160Watermelon (97103) v2cmowmbB644
CmoCh03G012160Watermelon (97103) v2cmowmbB652