CmoCh03G011010 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G011010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr03 : 8910831 .. 8913736 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTGAGTTTACTGTGATTCAATTCTATAAGTTTCCTTGTTTCAGATTTCGTGCATTTAGGTTGTGTTTATTCCTTTGATTTAATGCGTTGCAATAAGTTTTTTGTGTTGATGGCATTCAGTTTCTCTAATTCAAAATCTAGGGCTTAGCTTCGTTAATAGATTACACCTTTGAGTAATCACACCTTTGAGTAATCATTAGTTAGTAGTCAACCTAAACCTAGCTCAATTGGTTAAGTCATATGTTCTTGATCAAGAACTCAAACGGTTCATAAATCTAGCTCAATTGGTTAAGTCATATGCTCTCGATCAAGAACTCAAACGGTTCAATCCCCCATGTTTGACTGTTGTGTTGAATTCAAAATGGAAAAAGTAATAATCAGTATGTCTTGGGACAAGATCATATTGGGTTAAGTGTTAAGGGACCAAGAGACCAACGGTTGGAGGCTGCAAAATCAATGTATTCGTTCCTGTAAACCCAATGTATTTCCTAGTTTCTAATGTAACATATCATGTTTTCAGGATGTCTCCGGTGCGAATTCTGGTTATGTATAATGGCAATTGGATTTTTAGTGAGAATGGTTTTGAATTCAATGGTGACGAACTAAAAGGAATCATCGTCGATGAGAAGATTACGTATATCGATCTTTTGGACAAAGTCTATGTCGAGTTTTTCATTGGTGAGAATCTTGTAGACGACCGTGTTGTGCATCACTATCAAACGTAGAGAATCACTAGATCAAGGGGAGGAGGTACGTTATCCGGTTGCGTTCGATTCTGGAAGTGAAGTAATCAAACTTCTGGTTTTGTTCCTACTGCACAAAAGTCTGAAATTCCTCCCTTTCTTGCTCTTACTGAAATTGAAGAACAAAACACAACTGCCATAAGCTGTGGCCCTCAGGCAGACTTGAATTGTGATGATGAGATGCAAAATGTTGATCAACATCAACATGATGATTGTAATGATGATAGAGGACATGATAATGAGGTAGAAAACAAGCATATGCAAGACGATACGTACGGTTGTAGCGATGAGATTCATCCCCATACCTCGAATGATATGTATTTCGATAGTTTTACCATCCGAAATGGCAGAAAAGACGTCCAAGAATATGTAACATGTGATCCATTGAACTCGAGCATTCAACCGTGCTTATATTCTGAGCAGCTGAACACTGATGTACCAAAAAATTTAACTGTTGAGCAGTTGATGTCGGATGATACTATAGCAGTGGGTCAGACTTACCCAAGCAAGAAGGATGTACAGAGCAAGTTAAGTCTTATGGCCATAAGGGGAAATTTCAAGTTCAAGGTAAGGCGTTCGACAAGAGATTTATTGTTCATTTTATGTGTAGACAAAAGCTGTAAGTGGCGATTTCGTGCATCGAAGATGAACGATTCGGACTGCTTCTTGATAAGAAAGTTCCACATCGTCCATACTTGTTTGACAGAGAAAGTTCATTGCAACCATCATCAAGCCAGTAGTTGGGTTGTTGGTCAGCTGATTAAGTCCAAGTTTGAGGAAGGTGCATCTGATTATAGACCAAATGACATAATCAAGGATGTAGAGGAACAACTTGGAGTTACTATATCTTATGATAAAGCTTGGAGGACACGGGAAATTGCTTTTCGATACCTAAAGAGATCCCGGGATTGAGAGAGGCAGTCTCGAGGGAGGCCAAGGAAGGAAAAACCAGTATCGATTGACAAAGAGTCGTCTCTACGATTGTGTGGGACGTGTGGTGGTCGTGGCCACAATAGAAAAACTTGTAGGACTCTTCTTGTTTTGCAGTGAAGTGCTAGAGAACTGGGAGTTGATGAAAGAGTAACACCATGAATCCCAAACCAAAATTTATTTAGGATATGTCATGGGTAAGAGTTTATAATACTAAATAATAGTTTAGATGCACATTCGATTAATTTTTTAGGGATAAGACTCGATGATTTGTGTAGCATATTAAAGAACAAAACCTCAGTTCTTGTCTCAAAATACATATATAGTCAGCCTCAAGCCTCACTCGTGAGAAGATTCAGTCTTCACATCACAATACAAACTATACATTCAGCACCTTCTGAAACTCGTCGGTGATGTCGATGACTTCACTTTCATGTTCTTTTCTCTTCAATTCAGAAAGCTGTAAATTCAGTTCAACAATTTGCTTCTGAATTCTTTCTCCCCTGTCTGGTAATCTTGAGATAAGGACCTGATCATTCATTCACCCAAAGAAAATTTGAGCTGTTTGGATCAAATGAATTAAAACCAAAACGACGCCGGGAGGTGGCGAGATCTAGAGGTTTAATGGCTCGTTATGGACATTGGTAAATAGACTCTCTAGTAACTATGTCTTGTTTTGATTTTGTTGGATTGGATCTGTTTTTTGAGCTACCCCGGAAAAAATAAGGCATTGTTTGCTGGTTGTGTCAAGATTTTATTGTTTTGAACTGTCATTCAAAAGGGAAAGTTGCATAGAACCGTACCTTATTTTCTAGAGTTTGGGACAGCCGATTGATTCTCTCTTTGATTTCCCTTTCAGTTGGCTTGCTTGGACTGCTGCTTGCATTTGTAGCAAATCTATTCAACTTCACATCCTTTGGGTTAAAAGCAAACCTTGCCCTGGAAGCAACGTAAAGGATGTTATCTCACCATGTGACAATGTATTTCTTCGGTAACTGAAAAGTGTAACGTATGAACTCATACCCATTTGTATCAGGATCGGGTGAAGAACTTGATGTTGCTCTTTCACCAAAAGCAAACTCCTTATTCCTCCTACAACCATATTAACATACAACTGGTTAGTTTAAAAGGGTAAAGAACATTGCAAGGCTTATAATTATCTTTTGTTTTTGTTTTTTAAATAAGGACAAGACTTATGATGATCGAAACACCAAATATGAAATATAG

mRNA sequence

ATGGAGATTGAGTTTACTGTGATTCAATTCTATAAGTTTCCTTGTTTCAGATTTCGTGCATTTAGGATGTCTCCGGTGCGAATTCTGGTTATGTATAATGGCAATTGGATTTTTAGTGAGAATGGTTTTGAATTCAATGGTGACGAACTAAAAGGAATCATCGTCGATGAGAAGATTACGTATATCGATCTTTTGGACAAAACGACCGTGTTGTGCATCACTATCAAACGTAGAGAATCACTAGATCAAGGGGAGGAGGTACGTTATCCGGTTGCGTTCGATTCTGGAAGTGAAGTAATCAAACTTCTGTCTGAAATTCCTCCCTTTCTTGCTCTTACTGAAATTGAAGAACAAAACACAACTGCCATAAGCTGTGGCCCTCAGGCAGACTTGAATTGTGATGATGAGATGCAAAATGTTGATCAACATCAACATGATGATTGTAATGATGATAGAGGACATGATAATGAGGTAGAAAACAAGCATATGCAAGACGATACGTACGGTTGTAGCGATGAGATTCATCCCCATACCTCGAATGATATGTATTTCGATAGTTTTACCATCCGAAATGGCAGAAAAGACGTCCAAGAATATGTAACATGTGATCCATTGAACTCGAGCATTCAACCGTGCTTATATTCTGAGCAGCTGAACACTGATGTACCAAAAAATTTAACTGTTGAGCAGTTGATGTCGGATGATACTATAGCAGTGGGTCAGACTTACCCAAGCAAGAAGGATGTACAGAGCAAGTTAAGTCTTATGGCCATAAGGGGAAATTTCAAGTTCAAGAAAGCTGTAAATTCAGTTCAACAATTTGCTTCTGAATTCTTTCTCCCCTGTCTGAGTTTGGGACAGCCGATTGATTCTCTCTTTGATTTCCCTTTCAGTTGGCTTGCTTGGACTGCTGCTTGCATTTGTAGCAAATCTATTCAACTTCACATCCTTTGGGTTAAAAGCAAACCTTGCCCTGGAAGCAACGTAAAGGATGTTATCTCACCATGTGACAATGATCGGGTGAAGAACTTGATGTTGCTCTTTCACCAAAAGCAAACTCCTTATTCCTCCTACAACCATATTAACATACAACTGGACAAGACTTATGATGATCGAAACACCAAATATGAAATATAG

Coding sequence (CDS)

ATGGAGATTGAGTTTACTGTGATTCAATTCTATAAGTTTCCTTGTTTCAGATTTCGTGCATTTAGGATGTCTCCGGTGCGAATTCTGGTTATGTATAATGGCAATTGGATTTTTAGTGAGAATGGTTTTGAATTCAATGGTGACGAACTAAAAGGAATCATCGTCGATGAGAAGATTACGTATATCGATCTTTTGGACAAAACGACCGTGTTGTGCATCACTATCAAACGTAGAGAATCACTAGATCAAGGGGAGGAGGTACGTTATCCGGTTGCGTTCGATTCTGGAAGTGAAGTAATCAAACTTCTGTCTGAAATTCCTCCCTTTCTTGCTCTTACTGAAATTGAAGAACAAAACACAACTGCCATAAGCTGTGGCCCTCAGGCAGACTTGAATTGTGATGATGAGATGCAAAATGTTGATCAACATCAACATGATGATTGTAATGATGATAGAGGACATGATAATGAGGTAGAAAACAAGCATATGCAAGACGATACGTACGGTTGTAGCGATGAGATTCATCCCCATACCTCGAATGATATGTATTTCGATAGTTTTACCATCCGAAATGGCAGAAAAGACGTCCAAGAATATGTAACATGTGATCCATTGAACTCGAGCATTCAACCGTGCTTATATTCTGAGCAGCTGAACACTGATGTACCAAAAAATTTAACTGTTGAGCAGTTGATGTCGGATGATACTATAGCAGTGGGTCAGACTTACCCAAGCAAGAAGGATGTACAGAGCAAGTTAAGTCTTATGGCCATAAGGGGAAATTTCAAGTTCAAGAAAGCTGTAAATTCAGTTCAACAATTTGCTTCTGAATTCTTTCTCCCCTGTCTGAGTTTGGGACAGCCGATTGATTCTCTCTTTGATTTCCCTTTCAGTTGGCTTGCTTGGACTGCTGCTTGCATTTGTAGCAAATCTATTCAACTTCACATCCTTTGGGTTAAAAGCAAACCTTGCCCTGGAAGCAACGTAAAGGATGTTATCTCACCATGTGACAATGATCGGGTGAAGAACTTGATGTTGCTCTTTCACCAAAAGCAAACTCCTTATTCCTCCTACAACCATATTAACATACAACTGGACAAGACTTATGATGATCGAAACACCAAATATGAAATATAG

Homology

[Close]

BLAST of CmoCh03G011010 vs. TrEMBL
Match: A0A0A0KHL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476100 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.0e-27
Identity = 70/104 (67.31%), Postives = 79/104 (75.96%), Query Frame = 1


Query: 62  IDLLDKTTVLCITIKRRESLDQGEEVRYPVAFDSGSEVIKLL--------SEIPPFLALT 121
           +D   + T LCITIKRRESL+Q +EV YPV FDSGS   +          S+ PPFLALT
Sbjct: 31  VDDHGRRTPLCITIKRRESLNQEKEVHYPVPFDSGSVSNQTSGFAPTAQNSQFPPFLALT 90

Query: 122 EIEEQNTTAISCGPQADLNCDDEMQNVDQHQHDDCNDDRGHDNE 158
           EIEEQNTTAISCGPQAD+NCDDEMQN DQHQHD+CND+R  DNE
Sbjct: 91  EIEEQNTTAISCGPQADMNCDDEMQNADQHQHDNCNDNRVPDNE 134

[Close]

BLAST of CmoCh03G011010 vs. NCBI nr
Match: gi|778717679|ref|XP_011657739.1| (PREDICTED: uncharacterized protein LOC105435894 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 157/213 (73.71%), Postives = 176/213 (82.63%), Query Frame = 1


Query: 62  IDLLDKTTVLCITIKRRESLDQGEEVRYPVAFDSGSEVIKLL--------SEIPPFLALT 121
           +D   + T LCITIKRRESL+Q +EV YPV FDSGS   +          S+ PPFLALT
Sbjct: 91  VDDHGRRTPLCITIKRRESLNQEKEVHYPVPFDSGSVSNQTSGFAPTAQNSQFPPFLALT 150

Query: 122 EIEEQNTTAISCGPQADLNCDDEMQNVDQHQHDDCNDDRGHDNEVENKHMQDDTYGCSDE 181
           EIEEQNTTAISCGPQAD+NCDDEMQN DQHQHD+CND+R  DNEVEN HMQ+D YGCSDE
Sbjct: 151 EIEEQNTTAISCGPQADMNCDDEMQNADQHQHDNCNDNRVPDNEVENAHMQNDNYGCSDE 210

Query: 182 IHPHTSNDMYF-DSFTIRNGRKDVQEYVTCDPLNSSIQPCLYSEQLNTDVPKNLTVEQLM 241
           IHPHTSN+M F D+ TI+N RKD+QE+ T DPLN SIQPCLYSEQLN  VPKNLT+EQLM
Sbjct: 211 IHPHTSNNMSFDDNLTIQNDRKDIQEFATPDPLNPSIQPCLYSEQLNMSVPKNLTIEQLM 270

Query: 242 SDDTIAVGQTYPSKKDVQSKLSLMAIRGNFKFK 266
           S+DTIAVGQTYPSKKDVQSKLSLMAI+ NF+FK
Sbjct: 271 SNDTIAVGQTYPSKKDVQSKLSLMAIKENFEFK 303

[Close]

BLAST of CmoCh03G011010 vs. NCBI nr
Match: gi|659125348|ref|XP_008462640.1| (PREDICTED: uncharacterized protein LOC103500950 [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 1.1e-76
Identity = 153/213 (71.83%), Postives = 174/213 (81.69%), Query Frame = 1


Query: 62  IDLLDKTTVLCITIKRRESLDQGEEVRYPVAFDSGSEVIKLL--------SEIPPFLALT 121
           +D   + T LCIT+KRRESL+Q +EV YPV FDSGS   +          S+ PPFLALT
Sbjct: 91  VDDHGRRTPLCITVKRRESLNQEKEVHYPVPFDSGSVSNQTSGFVPTAQNSQFPPFLALT 150

Query: 122 EIEEQNTTAISCGPQADLNCDDEMQNVDQHQHDDCNDDRGHDNEVENKHMQDDTYGCSDE 181
           EIEEQNTTAISCGPQAD+NCDDEMQN DQHQHD+CND+RG +N VEN HMQ D YGCSDE
Sbjct: 151 EIEEQNTTAISCGPQADMNCDDEMQNADQHQHDNCNDNRGPNNVVENGHMQSDNYGCSDE 210

Query: 182 IHPHTSNDMYF-DSFTIRNGRKDVQEYVTCDPLNSSIQPCLYSEQLNTDVPKNLTVEQLM 241
           IHPH SN++ F D+ TI+N RKD+QE+ T DPLN SIQPCLYSEQLN  VPKNLT+EQLM
Sbjct: 211 IHPHNSNNISFDDNLTIQNDRKDIQEFATPDPLNPSIQPCLYSEQLNMSVPKNLTIEQLM 270

Query: 242 SDDTIAVGQTYPSKKDVQSKLSLMAIRGNFKFK 266
           S+DTIAVGQTYPSKKDVQSKLSLMAI+ NF+FK
Sbjct: 271 SNDTIAVGQTYPSKKDVQSKLSLMAIKENFEFK 303

[Close]

BLAST of CmoCh03G011010 vs. NCBI nr
Match: gi|700193115|gb|KGN48319.1| (hypothetical protein Csa_6G476100 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 70/104 (67.31%), Postives = 79/104 (75.96%), Query Frame = 1


Query: 62  IDLLDKTTVLCITIKRRESLDQGEEVRYPVAFDSGSEVIKLL--------SEIPPFLALT 121
           +D   + T LCITIKRRESL+Q +EV YPV FDSGS   +          S+ PPFLALT
Sbjct: 31  VDDHGRRTPLCITIKRRESLNQEKEVHYPVPFDSGSVSNQTSGFAPTAQNSQFPPFLALT 90

Query: 122 EIEEQNTTAISCGPQADLNCDDEMQNVDQHQHDDCNDDRGHDNE 158
           EIEEQNTTAISCGPQAD+NCDDEMQN DQHQHD+CND+R  DNE
Sbjct: 91  EIEEQNTTAISCGPQADMNCDDEMQNADQHQHDNCNDNRVPDNE 134

The following BLAST results are available for this feature:

BLAST of CmoCh03G011010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh03G011010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHL9_CUCSA	7.0e-27	67.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476100 PE=4 SV=1	[more]

BLAST of CmoCh03G011010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh03G011010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778717679\|ref\|XP_011657739.1\|	1.9e-78	73.71	PREDICTED: uncharacterized protein LOC105435894 [Cucumis sativus]	[more]
gi\|659125348\|ref\|XP_008462640.1\|	1.1e-76	71.83	PREDICTED: uncharacterized protein LOC103500950 [Cucumis melo]	[more]
gi\|700193115\|gb\|KGN48319.1\|	1.0e-26	67.31	hypothetical protein Csa_6G476100 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G011010.1	CmoCh03G011010.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G011010	CmaCh07G008140	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G011010	CmaCh03G011110	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G011010	Csa6G476100	Cucumber (Chinese Long) v2	cmocuB668
CmoCh03G011010	ClCG01G015130	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G011010	CSPI06G26050	Wild cucumber (PI 183967)	cmocpiB679
CmoCh03G011010	Lsi01G011720	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G011010	Cp4.1LG19g04790	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G011010	Cp4.1LG10g03740	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G011010	CsaV3_6G041240	Cucumber (Chinese Long) v3	cmocucB0794
CmoCh03G011010	Cla97C01G014140	Watermelon (97103) v2	cmowmbB642
CmoCh03G011010	Bhi03G001360	Wax gourd	cmowgoB0784
CmoCh03G011010	CsGy6G025590	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G011010	Carg10521	Silver-seed gourd	carcmoB0336
CmoCh03G011010	Carg05326	Silver-seed gourd	carcmoB1095

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh03G011010	CmoCh07G008440	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G011010	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G011010	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G011010	Melon (DHL92) v3.5.1	cmomeB598
CmoCh03G011010	Watermelon (97103) v1	cmowmB620
CmoCh03G011010	Melon (DHL92) v3.6.1	cmomedB687
CmoCh03G011010	Cucumber (Gy14) v1	cgycmoB0148