CmoCh03G008920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G008920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(MADS-box transcription factor 27) (1.3.1.74)
Location	Cmo_Chr03 : 6914599 .. 6916065 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCGAGCAGACAAGTGACCTTCTCCAAGAGGAGGAAGGGACTCATTAAAAAGGCTAAAGAGCTCTCTATTCTCTGCGATGCCGAACTTGCTCTCATTATCTTCTCCAGCTCCGGCAAACAGTATGAATTTGCAAGCACTAGGTTCGCCCTCTTTTTGTTTCTTACTTCAAAATCATCTCATTATCTGTATTTGAGTTCTACTTATTAAGAAATCCAGAGGAAATAAATTTAAATGTTAGTTTGTGATTTGTTTTGGTCAGCATAGAGTCGGTAATTGAGAAATATAATAGACGAAAGGAGGAAGATGAACTGCTGTTGAATCCAATTTCTGATGTCAAGGTATACATATAAATACATCCACCATCAATCCAACTTCTTCTTGCTCTCTTTTCTCCATTCTGTGTAGGATTTACTCGGTTCCTTCTTGAAAAATTATAATCTTTAGATACAGATTTGAAATTTGTGCCCACAATTAATAACTAATATATACAAGATTCCAATTACTTATCTAATGGTTTAAATCTATGAGTTATATTGTGATGGTCTACTCCAATAATTTCTCAAAAATCTTCCAAGTTTATTTGATAATTGTTCTAGAGGATTAGTTGGTTAAATTATAAATTTAGTTTGTGCTTTAAATTTTGAATTTTAACATATTAGAAATTTTGAAAATTATTGATATATTATACATAAAACTAAACCTTTGATTATTGTGTTACATTGAAAGTTATGGCAGAAGGAAGTATCAGCTCTAAGGCAACAACTACTTAACTTGCAGGAGAATAATAGGTAATTAATTAGCTTCTTATTACAAAATTTGGTTATTGTATTGAATAATTAATTATGTTGTAACAAATGCTTAAAAATGTTTAATGTAATTAATATTTTTTTTGTATACAGGAAATTAATGGGGGAGCAACTCTATGGTTTATCAATTAAAGACCTAAACAGCCTTGAGAGCCAATTAGAGTTCAGCTTACAAAGCATCCGAATTAAAAAGGTCAGATATTTATTTACTTATTAATTAGGTAACAACCCATTTTTTGCATCCTTAAATCATATGAAATTGAGGTGGGTTTAATATTAATACCAATTTCTGTGTTGCAAGCAGGAACAGATATTAAACGATGAAATAAAAGAATTGAACAGAAAGGTAAAAAAAAAAAAAAAAAAATGTTGGTTTTCATGAGAGCCTTAAACGAGTAACAAAACTTGGGTTGTTCTTCTCCCTTACCATTTGCAGGGAATTCTGATGCACCAACAAAATGTAGAGCTGGCCAATAAAGTAAACCTCTTTTGTCAAGAAAACATTGAATTGCACAGAAAGGTATCTCTCTCCAACAAAGCCTCAACCAATTAATTCCATAAATCATTGTGATAATTGGTTCTTAATCTCTGCAGGTTTACGGGCATGATTCAAGATTAG

mRNA sequence

ATGGGTCGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCGAGCAGACAAGTGACCTTCTCCAAGAGGAGGAAGGGACTCATTAAAAAGGCTAAAGAGCTCTCTATTCTCTGCGATGCCGAACTTGCTCTCATTATCTTCTCCAGCTCCGGCAAACAGTATGAATTTGCAAGCACTAGCATAGAGTCGGTAATTGAGAAATATAATAGACGAAAGGAGGAAGATGAACTGCTGTTGAATCCAATTTCTGATGTCAAGTTATGGCAGAAGGAAGTATCAGCTCTAAGGCAACAACTACTTAACTTGCAGGAGAATAATAGGTTTACGGGCATGATTCAAGATTAG

Coding sequence (CDS)

ATGGGTCGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCGAGCAGACAAGTGACCTTCTCCAAGAGGAGGAAGGGACTCATTAAAAAGGCTAAAGAGCTCTCTATTCTCTGCGATGCCGAACTTGCTCTCATTATCTTCTCCAGCTCCGGCAAACAGTATGAATTTGCAAGCACTAGCATAGAGTCGGTAATTGAGAAATATAATAGACGAAAGGAGGAAGATGAACTGCTGTTGAATCCAATTTCTGATGTCAAGTTATGGCAGAAGGAAGTATCAGCTCTAAGGCAACAACTACTTAACTTGCAGGAGAATAATAGGTTTACGGGCATGATTCAAGATTAG

Homology

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BLAST of CmoCh03G008920 vs. Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.0e-35
Identity = 77/108 (71.30%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVI+RID+S SRQVTFSKRRKGLIKKAKEL+ILCDAE+ LIIFSS+GK Y+FAS+
Sbjct: 1   MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S++SVI++YN+ K E + LLNP S+VK WQ+E + LRQ+L  LQEN+R
Sbjct: 61  SMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHR 108

[Close]

BLAST of CmoCh03G008920 vs. Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 8.9e-35
Identity = 72/108 (66.67%), Postives = 94/108 (87.04%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVIRRIDNS SRQVTFSKRR G+ KKAKEL+ILCDAE+ L+IFSS+G+ YE++ST
Sbjct: 1   MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S++SVI++Y + K+E + + NP S++K WQ+E ++LRQQL NLQEN+R
Sbjct: 61  SMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHR 108

[Close]

BLAST of CmoCh03G008920 vs. Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-33
Identity = 72/108 (66.67%), Postives = 92/108 (85.19%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVI++ID+S SRQVTFSKRRKGLIKKAKEL+ILCDAE+ LIIFS++ K Y+FAS+
Sbjct: 1   MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S++S IE++N  K E++ L+NP S+VK WQ+E   LRQ+L +LQEN R
Sbjct: 61  SVKSTIERFNTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYR 108

[Close]

BLAST of CmoCh03G008920 vs. Swiss-Prot
Match: ANR1_ARATH (MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.9e-33
Identity = 75/109 (68.81%), Postives = 94/109 (86.24%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAS- 60
           MGRGKIVIRRIDNS SRQVTFSKRR GL+KKAKELSILCDAE+ +IIFSS+GK Y++AS 
Sbjct: 1   MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query: 61  TSIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           +S++++IE+YNR KEE   LLN  S++K WQ+EV++L+QQL  LQE +R
Sbjct: 61  SSMKTIIERYNRVKEEQHQLLNHASEIKFWQREVASLQQQLQYLQECHR 109

[Close]

BLAST of CmoCh03G008920 vs. Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 5.4e-32
Identity = 71/108 (65.74%), Postives = 93/108 (86.11%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVIRRIDNS SRQVTFSKRR GL+KKAKELSILCDAE+ L++FSS+G+ YEF+ST
Sbjct: 1   MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           ++++VI++Y   KEE  L  N  S++K+WQ+E ++LRQQL NLQE+++
Sbjct: 61  NMKTVIDRYTNAKEE-LLGGNATSEIKIWQREAASLRQQLHNLQESHK 107

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BLAST of CmoCh03G008920 vs. TrEMBL
Match: A0A067K7F5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12632 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.9e-37
Identity = 83/108 (76.85%), Postives = 97/108 (89.81%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVIRRIDNS SRQVTFSKRRKGLIKKAKEL+ILCDAE+ L+IFSSSGK YEFA+T
Sbjct: 1   MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSSGKLYEFANT 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S++SVIE+YN+ KEE + LLNP S+VK WQ+E + LRQQL NLQE++R
Sbjct: 61  SMKSVIERYNKTKEEHQQLLNPTSEVKFWQREAAILRQQLHNLQESHR 108

[Close]

BLAST of CmoCh03G008920 vs. TrEMBL
Match: A0A0D2T9F2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058200 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.3e-36
Identity = 82/108 (75.93%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKI IRRIDNSASRQVTFSKRRKGLIKKAKEL+ILCDAE+ L+IFSSSGK YEFAST
Sbjct: 1   MGRGKIAIRRIDNSASRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSSGKLYEFAST 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S++SVIE+YN  KEE + L NP S+VK WQ+E + L+QQL NLQ+N+R
Sbjct: 61  SMKSVIERYNTLKEEHQQLSNPSSEVKFWQREAAILKQQLQNLQDNHR 108

[Close]

BLAST of CmoCh03G008920 vs. TrEMBL
Match: U5L206_GOSHI (MADS box protein MADS38 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.3e-36
Identity = 81/108 (75.00%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKI IRRIDNSASRQVTFSKRRKGLIKKAKEL+ILCDAE+ L+IFSSSGK YEFAST
Sbjct: 1   MGRGKIAIRRIDNSASRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSSGKLYEFAST 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S+++VIE+YN  KEE + L NP S+VK WQ+E + L+QQL NLQ+N+R
Sbjct: 61  SMKTVIERYNTLKEEHQQLSNPSSEVKFWQREAAILKQQLQNLQDNHR 108

[Close]

BLAST of CmoCh03G008920 vs. TrEMBL
Match: D7T5C5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0211g00180 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 80/108 (74.07%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKI IRRIDNS SRQVTFSKRRKGL+KKAKEL+ILCDAE+ LIIFSS+GK YEFAST
Sbjct: 1   MGRGKIEIRRIDNSTSRQVTFSKRRKGLLKKAKELAILCDAEVGLIIFSSTGKLYEFAST 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S++S I++Y++ KEE+  LLNP S+VK WQ+E + LRQQL NLQEN+R
Sbjct: 61  SMKSAIDRYHKSKEENHQLLNPASEVKFWQREAAILRQQLQNLQENHR 108

[Close]

BLAST of CmoCh03G008920 vs. TrEMBL
Match: A0A061FF38_THECC (AGAMOUS-like 16 OS=Theobroma cacao GN=TCM_034549 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.7e-35
Identity = 79/108 (73.15%), Postives = 94/108 (87.04%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVIRRIDNS SRQVTFSKRR GL+KKAKEL+ILCDAE+ ++IFSS+GK Y+FAST
Sbjct: 1   MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAST 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S+ SVIE+YN+ KEE + L NP S+VK WQ+E + LRQQL NLQEN+R
Sbjct: 61  SMRSVIERYNKTKEEHQQLGNPTSEVKFWQREAAILRQQLQNLQENHR 108

[Close]

BLAST of CmoCh03G008920 vs. TAIR10
Match: AT4G37940.1 (AT4G37940.1 AGAMOUS-like 21)

HSP 1 Score: 150.6 bits (379), Expect = 5.9e-37
Identity = 77/108 (71.30%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVI+RID+S SRQVTFSKRRKGLIKKAKEL+ILCDAE+ LIIFSS+GK Y+FAS+
Sbjct: 1   MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S++SVI++YN+ K E + LLNP S+VK WQ+E + LRQ+L  LQEN+R
Sbjct: 61  SMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHR 108

[Close]

BLAST of CmoCh03G008920 vs. TAIR10
Match: AT2G22630.1 (AT2G22630.1 AGAMOUS-like 17)

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-34
Identity = 72/108 (66.67%), Postives = 92/108 (85.19%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVI++ID+S SRQVTFSKRRKGLIKKAKEL+ILCDAE+ LIIFS++ K Y+FAS+
Sbjct: 1   MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S++S IE++N  K E++ L+NP S+VK WQ+E   LRQ+L +LQEN R
Sbjct: 61  SVKSTIERFNTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYR 108

[Close]

BLAST of CmoCh03G008920 vs. TAIR10
Match: AT2G14210.1 (AT2G14210.1 AGAMOUS-like 44)

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-34
Identity = 75/109 (68.81%), Postives = 94/109 (86.24%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAS- 60
           MGRGKIVIRRIDNS SRQVTFSKRR GL+KKAKELSILCDAE+ +IIFSS+GK Y++AS 
Sbjct: 1   MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query: 61  TSIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           +S++++IE+YNR KEE   LLN  S++K WQ+EV++L+QQL  LQE +R
Sbjct: 61  SSMKTIIERYNRVKEEQHQLLNHASEIKFWQREVASLQQQLQYLQECHR 109

[Close]

BLAST of CmoCh03G008920 vs. TAIR10
Match: AT3G57230.1 (AT3G57230.1 AGAMOUS-like 16)

HSP 1 Score: 133.3 bits (334), Expect = 9.8e-32
Identity = 67/108 (62.04%), Postives = 90/108 (83.33%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKI I+RI+NS SRQVTFSKRR GL+KKAKEL+ILCDAE+ +IIFSS+G+ Y+F+S+
Sbjct: 1   MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S++SVIE+Y+  K E     +P S+++ WQKE + L++QL NLQEN+R
Sbjct: 61  SMKSVIERYSDAKGETSSENDPASEIQFWQKEAAILKRQLHNLQENHR 108

[Close]

BLAST of CmoCh03G008920 vs. TAIR10
Match: AT2G45650.1 (AT2G45650.1 AGAMOUS-like 6)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-23
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRG++ ++RI+N  +RQVTFSKRR GL+KKA ELS+LCDAE+ALIIFSS GK YEF S 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
            IES IE+YNR          P    + W +EV+ L+ +  +L   NR
Sbjct: 61  GIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNR 108

[Close]

BLAST of CmoCh03G008920 vs. NCBI nr
Match: gi|778722432|ref|XP_011658484.1| (PREDICTED: agamous-like MADS-box protein AGL21 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAE+ LIIFSSSGK YEFAS+
Sbjct: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S+ S+IEKYNRRKEEDELLLNPISDVKLWQKEV+ LRQQL NLQENNR
Sbjct: 61  SMHSIIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNR 108

[Close]

BLAST of CmoCh03G008920 vs. NCBI nr
Match: gi|659079915|ref|XP_008440514.1| (PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAE+ LIIFSSSGK YEFAS+
Sbjct: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S+ S+IEKYNRRKEEDELLLNPISDVKLWQKEV+ LRQQL NLQENNR
Sbjct: 61  SMHSIIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNR 108

[Close]

BLAST of CmoCh03G008920 vs. NCBI nr
Match: gi|659079911|ref|XP_008440512.1| (PREDICTED: MADS-box transcription factor 23-like isoform X1 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAE+ LIIFSSSGK YEFAS+
Sbjct: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S+ S+IEKYNRRKEEDELLLNPISDVKLWQKEV+ LRQQL NLQENNR
Sbjct: 61  SMHSIIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNR 108

[Close]

BLAST of CmoCh03G008920 vs. NCBI nr
Match: gi|659079917|ref|XP_008440515.1| (PREDICTED: MADS-box transcription factor 23-like isoform X4 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAE+ LIIFSSSGK YEFAS+
Sbjct: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S+ S+IEKYNRRKEEDELLLNPISDVKLWQKEV+ LRQQL NLQENNR
Sbjct: 61  SMHSIIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNR 108

[Close]

BLAST of CmoCh03G008920 vs. NCBI nr
Match: gi|659079913|ref|XP_008440513.1| (PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 8.3e-41
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 1


Query: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAST 60
           MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAE+ LIIFSSSGK YEFAS+
Sbjct: 1   MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61  SIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNR 109
           S+ S+IEKYNRRKEEDELLLNPISDVK   KEV+ LRQQL NLQENNR
Sbjct: 61  SMHSIIEKYNRRKEEDELLLNPISDVK---KEVTTLRQQLHNLQENNR 105

The following BLAST results are available for this feature:

BLAST of CmoCh03G008920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL21_ARATH	1.0e-35	71.30	Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1	[more]
MAD27_ORYSJ	8.9e-35	66.67	MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 ...	[more]
AGL17_ARATH	2.2e-33	66.67	Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2	[more]
ANR1_ARATH	2.9e-33	68.81	MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1	[more]
MAD57_ORYSJ	5.4e-32	65.74	MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 ...	[more]

BLAST of CmoCh03G008920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067K7F5_JATCU	3.9e-37	76.85	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12632 PE=4 SV=1	[more]
A0A0D2T9F2_GOSRA	3.3e-36	75.93	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058200 PE=4 SV=1	[more]
U5L206_GOSHI	7.3e-36	75.00	MADS box protein MADS38 OS=Gossypium hirsutum PE=2 SV=1	[more]
D7T5C5_VITVI	1.2e-35	74.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0211g00180 PE=4 SV=...	[more]
A0A061FF38_THECC	4.7e-35	73.15	AGAMOUS-like 16 OS=Theobroma cacao GN=TCM_034549 PE=4 SV=1	[more]

BLAST of CmoCh03G008920 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37940.1	5.9e-37	71.30	AGAMOUS-like 21	[more]
AT2G22630.1	1.2e-34	66.67	AGAMOUS-like 17	[more]
AT2G14210.1	1.6e-34	68.81	AGAMOUS-like 44	[more]
AT3G57230.1	9.8e-32	62.04	AGAMOUS-like 16	[more]
AT2G45650.1	1.3e-23	53.70	AGAMOUS-like 6	[more]

BLAST of CmoCh03G008920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722432\|ref\|XP_011658484.1\|	1.2e-44	90.74	PREDICTED: agamous-like MADS-box protein AGL21 [Cucumis sativus]	[more]
gi\|659079915\|ref\|XP_008440514.1\|	1.2e-44	90.74	PREDICTED: MADS-box transcription factor 23-like isoform X3 [Cucumis melo]	[more]
gi\|659079911\|ref\|XP_008440512.1\|	1.2e-44	90.74	PREDICTED: MADS-box transcription factor 23-like isoform X1 [Cucumis melo]	[more]
gi\|659079917\|ref\|XP_008440515.1\|	1.2e-44	90.74	PREDICTED: MADS-box transcription factor 23-like isoform X4 [Cucumis melo]	[more]
gi\|659079913\|ref\|XP_008440513.1\|	8.3e-41	87.96	PREDICTED: MADS-box transcription factor 23-like isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G008920.1	CmoCh03G008920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 6.5E-28coord: 38..59 score: 6.5E-28coord: 3..23 score: 6.5
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 score: 1.5
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 6.2
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 30
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 2..78 score: 1.31
None	No IPR available	unknown	Coil	Coil	coord: 86..106 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..108 score: 4.9
None	No IPR available	PANTHER	PTHR11945:SF144	AGAMOUS-LIKE MADS-BOX PROTEIN AGL17-RELATED	coord: 2..108 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G008920	Cucsa.103820	Cucumber (Gy14) v1	cgycmoB0227
CmoCh03G008920	CmaCh03G008540	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G008920	Cla014090	Watermelon (97103) v1	cmowmB623
CmoCh03G008920	MELO3C007700	Melon (DHL92) v3.5.1	cmomeB605
CmoCh03G008920	ClCG01G018230	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G008920	CSPI06G29600	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G008920	Lsi01G008250	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G008920	Lsi04G022910	Bottle gourd (USVL1VR-Ls)	cmolsiB602
CmoCh03G008920	Cp4.1LG10g01570	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G008920	MELO3C003502.2	Melon (DHL92) v3.6.1	cmomedB679
CmoCh03G008920	MELO3C007700.2	Melon (DHL92) v3.6.1	cmomedB694
CmoCh03G008920	CsaV3_6G044810	Cucumber (Chinese Long) v3	cmocucB0793
CmoCh03G008920	CsaV3_3G048150	Cucumber (Chinese Long) v3	cmocucB0770
CmoCh03G008920	Cla97C01G017500	Watermelon (97103) v2	cmowmbB642
CmoCh03G008920	Bhi03G001332	Wax gourd	cmowgoB0790
CmoCh03G008920	Bhi09G002132	Wax gourd	cmowgoB0808
CmoCh03G008920	CsGy6G029100	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G008920	CsGy3G043170	Cucumber (Gy14) v2	cgybcmoB381
CmoCh03G008920	Carg00740	Silver-seed gourd	carcmoB0551

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G008920	Cucumber (Chinese Long) v3	cmocucB0762
CmoCh03G008920	Watermelon (97103) v2	cmowmbB672
CmoCh03G008920	Wax gourd	cmowgoB0792
CmoCh03G008920	Wax gourd	cmowgoB0800
CmoCh03G008920	Cucurbita moschata (Rifu)	cmocmoB145
CmoCh03G008920	Cucurbita moschata (Rifu)	cmocmoB452
CmoCh03G008920	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh03G008920	Cucumber (Gy14) v1	cgycmoB0459
CmoCh03G008920	Cucurbita maxima (Rimu)	cmacmoB187
CmoCh03G008920	Cucurbita maxima (Rimu)	cmacmoB784
CmoCh03G008920	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G008920	Wild cucumber (PI 183967)	cmocpiB651
CmoCh03G008920	Cucumber (Chinese Long) v2	cmocuB639
CmoCh03G008920	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G008920	Melon (DHL92) v3.5.1	cmomeB587
CmoCh03G008920	Watermelon (Charleston Gray)	cmowcgB600
CmoCh03G008920	Watermelon (97103) v1	cmowmB609
CmoCh03G008920	Cucurbita pepo (Zucchini)	cmocpeB607
CmoCh03G008920	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G008920	Cucurbita pepo (Zucchini)	cmocpeB640
CmoCh03G008920	Bottle gourd (USVL1VR-Ls)	cmolsiB607
CmoCh03G008920	Cucumber (Gy14) v2	cgybcmoB227
CmoCh03G008920	Melon (DHL92) v3.6.1	cmomedB673
CmoCh03G008920	Silver-seed gourd	carcmoB0004
CmoCh03G008920	Silver-seed gourd	carcmoB0086