CmoCh03G008320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G008320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	APOLLO
Location	Cmo_Chr03 : 6644887 .. 6647283 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTGAGATCGTCTTCTTCGACTTGGAAACTACAGTGCCCAATAGAATCGGGCAACGGTTTCGAGTATTGGAATTCGGTGCTATTGTCATCTGCCCCATGAAGCTTGTGGAGCTTCAGAGCTTTGCTACCCTCATCAGGCCGAAGGATCTGTCGGCTGTTTCATTGAGGTCCACCCGACCTGATGGGATAACAAGAGAAATCGTTGCCACTGCGCCATTGTTTGAGGAAGTTGCAGACAAGATTTTCAGCATCTTGAATGGAAGGATATGGGCAGGCCATAACATTCGAAGATTCGATTGTGTTCGTATTGTTGGATGATGGAAGTCTCACATCGACTAATTTAGGGTGTGATCATGGGTTTATAAGTGAGGAATACTAACTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACATGGTATCAGAGCCATGCCCTAAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATATCGAACAAAGAACTCTTAAAGAAAAGGAGCTAAGCCCCTCCTCGAAGGCAGTCAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCGATTAAGGGGAGGCGCACTTTGTTCGAGGGGAGGTGTTGGATGATGGAAGTCCCACATCGACTAATTTAGGGTGTGATCATGGGTTTATAAGTGAGGAATACTAACTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACATGGTATCAGAGCCATGCCCTAAACTTAGTCGTGCCAATAGATGGGTAAATCCTCGAATCCTCAAATATCGAACAAAGAACTCTTAAAGAAAAAGGAGCCAAGCCCCTCCTTGAAGGCAGTCAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCGATTAAGGGGAGGCGCACTTTGTTCGAGGGGAGGTGTTGGATGATGGAAGTCCCACATCGACTAATTTAGGGTGTGATCATGGGTTTATAAGTGAGGAATACTAACTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACATGGTATCAGAGCCATGCCCTAAACTTAGTCGTGCCAATAGATGGGTAAATCCTCGAATCCTCAAATATCGAACAAAGAACTCTTAAAGAAAAAGGAGCCAAGCCCCTCCTTGAAGGCAGTCAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCGATTAAGGGGAGGCGCACTTTGTTCGAGGGGAGGTGTTGGATGATGGAAGTCCCACATCGACTAATTTAGGGTGTGATCATGGGTTTATAAGTGAGGAATACTAACTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACACGTATTAGGGAGGCGTTCGCGGAGATTGGCAGGCCTGCTCCTACCCCAGTTGGGATGGTTGATTCCTTAGGAATCTTAACTCACAAGTTTGGCAAGAGAGCAGGGAACATGAAGGTAAACCGTTAAAATCATAACATACAGCAATGTGTAATCACTACATTCAGAATAGTTCTCATGTTTTGAAGTGTTTCATGTTTAGATGGCATCATTGGCTTCTTACTTTCAGCTGGGGCAGCAAAAGCACAGGTATACATACAATCGGTTAACTCCCTCCCTTTGTGTGCGTGTGTCATGCCACCTTGGTTCACATAAGTTCTTTGTGCAGGAGCCTTGATGATGTTCGTATGAACTTGGAGGTCCTCAAGCATTGTGCTACTGTTCTATTTCTGGTGAGTCATCTCATCTAAACAGAATTCCTCTTCGTGGGTCATCTCTGATATTGGTAATTTTTGTACCAGGAATCGACCCTCCCAAGCATATTGCAGGGGAAGTGGAAGACTTCATCCACCATAACAACCCGAAACAGAGCAAATGGGAAGCTGCATTGCAGAGAGGAAAGTAGTCGAAAATCCCCTCCATCGTCGCCTGGGTATCAACTGAGATCAGCTCCTTATGCAAGGGAAAGACTGGGAATTGGAAAGGTTTAGTTACAGGTCTTTCTTTATACGCATAAAGGAAACATTTTTTCCCAACCAACTGATGAAAATGTGGTGAATTGAAACAGATGGCAGCTGAGGTAAAGAATGTATTCTGCATGGCTCACCGAAAGCCGCATCTTAACGTCTTACTTAAACATTCTCGATCGCTACTAAGGTAA

mRNA sequence

ATGGAAGCTGAGATCGTCTTCTTCGACTTGGAAACTACAGTGCCCAATAGAATCGGGCAACGGTTTCGAGTATTGGAATTCGGTGCTATTGTCATCTGCCCCATGAAGCTTGTGGAGCTTCAGAGCTTTGCTACCCTCATCAGGCCGAAGGATCTGTCGGCTGTTTCATTGAGGTCCACCCGACCTGATGGGATAACAAGAGAAATCGTTGCCACTGCGCCATTGTTTGAGGAAATGGCATCATTGGCTTCTTACTTTCAGCTGGGGCAGCAAAAGCACAGGAGCCTTGATGATGTTCGTATGAACTTGGAGGTCCTCAAGCATTGTGCTACTGTTCTATTTCTGGAATCGACCCTCCCAAGCATATTGCAGGGGAAGTGGAAGACTTCATCCACCATAACAACCCGAAACAGAGCAAATGGGAAGCTGCATTGCAGAGAGGAAAGTAGTCGAAAATCCCCTCCATCGTCGCCTGGGTATCAACTGAGATCAGCTCCTTATGCAAGGGAAAGACTGGGAATTGGAAAGATGGCAGCTGAGGTAAAGAATGTATTCTGCATGGCTCACCGAAAGCCGCATCTTAACGTCTTACTTAAACATTCTCGATCGCTACTAAGGTAA

Coding sequence (CDS)

ATGGAAGCTGAGATCGTCTTCTTCGACTTGGAAACTACAGTGCCCAATAGAATCGGGCAACGGTTTCGAGTATTGGAATTCGGTGCTATTGTCATCTGCCCCATGAAGCTTGTGGAGCTTCAGAGCTTTGCTACCCTCATCAGGCCGAAGGATCTGTCGGCTGTTTCATTGAGGTCCACCCGACCTGATGGGATAACAAGAGAAATCGTTGCCACTGCGCCATTGTTTGAGGAAATGGCATCATTGGCTTCTTACTTTCAGCTGGGGCAGCAAAAGCACAGGAGCCTTGATGATGTTCGTATGAACTTGGAGGTCCTCAAGCATTGTGCTACTGTTCTATTTCTGGAATCGACCCTCCCAAGCATATTGCAGGGGAAGTGGAAGACTTCATCCACCATAACAACCCGAAACAGAGCAAATGGGAAGCTGCATTGCAGAGAGGAAAGTAGTCGAAAATCCCCTCCATCGTCGCCTGGGTATCAACTGAGATCAGCTCCTTATGCAAGGGAAAGACTGGGAATTGGAAAGATGGCAGCTGAGGTAAAGAATGTATTCTGCATGGCTCACCGAAAGCCGCATCTTAACGTCTTACTTAAACATTCTCGATCGCTACTAAGGTAA

Homology

[Close]

BLAST of CmoCh03G008320 vs. Swiss-Prot
Match: NEN4_ARATH (Protein NEN4 OS=Arabidopsis thaliana GN=NEN4 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.1e-25
Identity = 71/131 (54.20%), Postives = 82/131 (62.60%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MASLA+YF LG QKHRSLDDVRMNLEVLKHCATVLFLESTLP+ L+GKW TSS I TR+
Sbjct: 146 KMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTLPNHLEGKWHTSSKIMTRS 205

Query: 138 RANGKLHCREESSRKSPPSSPGYQL--RSAPYARERLGIGKMAAEVKNVFCMAHRKPHLN 197
           R N                   YQ+  R+ PY++  L   KM   VKN+   A     L 
Sbjct: 206 RRN-------------------YQIAQRAMPYSKGSL--EKMTQNVKNLLSKAQGNQTLQ 255

Query: 198 VLLKHSRSLLR 207
            L+ HS SLLR
Sbjct: 266 SLINHSHSLLR 255

[Close]

BLAST of CmoCh03G008320 vs. Swiss-Prot
Match: NEN1_ARATH (Protein NEN1 OS=Arabidopsis thaliana GN=NEN1 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.1e-18
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 1


Query: 3  AEIVFFDLETTVPNRIGQRFRVLEFGAIVICPMKLVELQSFATLIRPKDLSAVSLRSTRP 62
          +EI FFD+ETTVP R GQRF +LEFG+I++CP KL EL+S+ TL++P DLS +S  S R 
Sbjct: 7  SEIAFFDVETTVPKR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRC 66

Query: 63 DGITREIVATAPLFEEMA 81
          +GI R+ V  APLF ++A
Sbjct: 67 NGIKRDDVVLAPLFADIA 83

[Close]

BLAST of CmoCh03G008320 vs. Swiss-Prot
Match: NEN3_ARATH (Protein NEN3 OS=Arabidopsis thaliana GN=NEN3 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 3  AEIVFFDLETTVPNRIGQRFRVLEFGAIVICPMKLVELQSFATLIRPKDLSAVSLRSTRP 62
          +EI FFDLET VP + G+ F +LEFGAI++CP +L EL S++TL+RP DLS +S  + R 
Sbjct: 11 SEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTKRR 70

Query: 63 DGITREIVATAPLFEEMA 81
           GITR+ V +A  F E+A
Sbjct: 71 SGITRDGVLSAHTFSEIA 88

[Close]

BLAST of CmoCh03G008320 vs. Swiss-Prot
Match: NEN2_ARATH (Protein NEN2 OS=Arabidopsis thaliana GN=NEN2 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-16
Identity = 38/78 (48.72%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 3  AEIVFFDLETTVPNRIGQRFRVLEFGAIVICPMKLVELQSFATLIRPKDLSAVSLRSTRP 62
          +EI FFD+ETT+P R+GQ + +LEFG+I++CP KLVEL++++ L+RP +L+ ++ RS + 
Sbjct: 14 SEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLITPRSVKC 73

Query: 63 DGITREIVATAPLFEEMA 81
          +GI RE V +A  F ++A
Sbjct: 74 NGIKREDVESALTFADIA 91

[Close]

BLAST of CmoCh03G008320 vs. TrEMBL
Match: A0A0A0KIX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500610 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 7.4e-47
Identity = 105/129 (81.40%), Postives = 109/129 (84.50%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQ KWKTSST TTR+
Sbjct: 154 KMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQEKWKTSSTKTTRS 213

Query: 138 RANGKLHCREESSRKSPPSSPGYQLRSAPYARERLGIGKMAAEVKNVFCMAHRKPHLNVL 197
           RANGKL+CREESSRKSPPSSPGYQLRS PY+RE LGIGK              K HLNVL
Sbjct: 214 RANGKLNCREESSRKSPPSSPGYQLRSVPYSREGLGIGK-------------GKQHLNVL 269

Query: 198 LKHSRSLLR 207
           LKHSR LLR
Sbjct: 274 LKHSRLLLR 269

[Close]

BLAST of CmoCh03G008320 vs. TrEMBL
Match: D7SW01_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00950 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-37
Identity = 93/154 (60.39%), Postives = 106/154 (68.83%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MA+LA+YF LGQQKHRSLDDVRMNLEVLKHCATVLFLES+LPS+L GKW  S+TITTR+
Sbjct: 151 KMATLATYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPSVLSGKWHDSTTITTRS 210

Query: 138 RANGKLHCREESSRKSPPSSPGYQLRSAPYARERLG------------------------ 197
           R+NGKL CREESSRKSP +S GYQ R+ PYAR  LG                        
Sbjct: 211 RSNGKLMCREESSRKSPTTSLGYQ-RAVPYARGGLGKVSSFPFSLLKNLHGYLSMPLTNN 270

Query: 198 -IGKMAAEVKNVFCMAHRKPHLNVLLKHSRSLLR 207
              +M   VKN+ C A  KP LN +LKHS SLLR
Sbjct: 271 KSKQMTERVKNLLCKAREKPALNNILKHSHSLLR 303

[Close]

BLAST of CmoCh03G008320 vs. TrEMBL
Match: A0A151RRQ1_CAJCA (DNA polymerase III polC-type OS=Cajanus cajan GN=KK1_033236 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 87/129 (67.44%), Postives = 101/129 (78.29%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MA+LASYF LGQQKHRSLDDVRMNLEVLKHCATVLFLES+LP+ L GKW  S ++ TR+
Sbjct: 150 KMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPNTLHGKWYGSPSVMTRS 209

Query: 138 RANGKLHCREESSRKSPPSSPGYQLRSAPYARERLGIGKMAAEVKNVFCMAHRKPHLNVL 197
           R+NGK  C+EESSRKSPP+S GYQ R+ PYAR  L  GK+   VK + C A  +P L  L
Sbjct: 210 RSNGKSPCKEESSRKSPPTSFGYQ-RTVPYARGSL--GKVTERVKGLLCKAQGQPPLQQL 269

Query: 198 LKHSRSLLR 207
           LKHS SLLR
Sbjct: 270 LKHSHSLLR 275

[Close]

BLAST of CmoCh03G008320 vs. TrEMBL
Match: V4SW39_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026247mg PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-36
Identity = 85/129 (65.89%), Postives = 98/129 (75.97%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MA+LASYF LGQQKHRSLDDVRMNLEVLKHCATVLFLES+LP+      ++S T+TTR+
Sbjct: 151 KMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRS 210

Query: 138 RANGKLHCREESSRKSPPSSPGYQLRSAPYARERLGIGKMAAEVKNVFCMAHRKPHLNVL 197
           R+NGKL CREE+SRKSPP S GYQ  + PY R  L  GKM   VKN+ C +     LN L
Sbjct: 211 RSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSL--GKMTESVKNLLCKSQGSQPLNTL 270

Query: 198 LKHSRSLLR 207
           LKHS SLLR
Sbjct: 271 LKHSHSLLR 277

[Close]

BLAST of CmoCh03G008320 vs. TrEMBL
Match: A0A067DVZ1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023805mg PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-36
Identity = 85/129 (65.89%), Postives = 98/129 (75.97%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MA+LASYF LGQQKHRSLDDVRMNLEVLKHCATVLFLES+LP+      ++S T+TTR+
Sbjct: 151 KMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRS 210

Query: 138 RANGKLHCREESSRKSPPSSPGYQLRSAPYARERLGIGKMAAEVKNVFCMAHRKPHLNVL 197
           R+NGKL CREE+SRKSPP S GYQ  + PY R  L  GKM   VKN+ C +     LN L
Sbjct: 211 RSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSL--GKMTESVKNLLCKSQGSQPLNTL 270

Query: 198 LKHSRSLLR 207
           LKHS SLLR
Sbjct: 271 LKHSHSLLR 277

[Close]

BLAST of CmoCh03G008320 vs. TAIR10
Match: AT4G39810.1 (AT4G39810.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-26
Identity = 71/131 (54.20%), Postives = 82/131 (62.60%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MASLA+YF LG QKHRSLDDVRMNLEVLKHCATVLFLESTLP+ L+GKW TSS I TR+
Sbjct: 146 KMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTLPNHLEGKWHTSSKIMTRS 205

Query: 138 RANGKLHCREESSRKSPPSSPGYQL--RSAPYARERLGIGKMAAEVKNVFCMAHRKPHLN 197
           R N                   YQ+  R+ PY++  L   KM   VKN+   A     L 
Sbjct: 206 RRN-------------------YQIAQRAMPYSKGSL--EKMTQNVKNLLSKAQGNQTLQ 255

Query: 198 VLLKHSRSLLR 207
            L+ HS SLLR
Sbjct: 266 SLINHSHSLLR 255

[Close]

BLAST of CmoCh03G008320 vs. TAIR10
Match: AT5G07710.1 (AT5G07710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-19
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 1


Query: 3  AEIVFFDLETTVPNRIGQRFRVLEFGAIVICPMKLVELQSFATLIRPKDLSAVSLRSTRP 62
          +EI FFD+ETTVP R GQRF +LEFG+I++CP KL EL+S+ TL++P DLS +S  S R 
Sbjct: 7  SEIAFFDVETTVPKR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRC 66

Query: 63 DGITREIVATAPLFEEMA 81
          +GI R+ V  APLF ++A
Sbjct: 67 NGIKRDDVVLAPLFADIA 83

[Close]

BLAST of CmoCh03G008320 vs. TAIR10
Match: AT1G74390.1 (AT1G74390.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 6.5e-18
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 3  AEIVFFDLETTVPNRIGQRFRVLEFGAIVICPMKLVELQSFATLIRPKDLSAVSLRSTRP 62
          +EI FFDLET VP + G+ F +LEFGAI++CP +L EL S++TL+RP DLS +S  + R 
Sbjct: 11 SEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTKRR 70

Query: 63 DGITREIVATAPLFEEMA 81
           GITR+ V +A  F E+A
Sbjct: 71 SGITRDGVLSAHTFSEIA 88

[Close]

BLAST of CmoCh03G008320 vs. TAIR10
Match: AT5G61390.1 (AT5G61390.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-17
Identity = 38/78 (48.72%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 3  AEIVFFDLETTVPNRIGQRFRVLEFGAIVICPMKLVELQSFATLIRPKDLSAVSLRSTRP 62
          +EI FFD+ETT+P R+GQ + +LEFG+I++CP KLVEL++++ L+RP +L+ ++ RS + 
Sbjct: 14 SEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLITPRSVKC 73

Query: 63 DGITREIVATAPLFEEMA 81
          +GI RE V +A  F ++A
Sbjct: 74 NGIKREDVESALTFADIA 91

[Close]

BLAST of CmoCh03G008320 vs. NCBI nr
Match: gi|659080136|ref|XP_008440629.1| (PREDICTED: uncharacterized protein LOC103484991 isoform X1 [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 4.3e-56
Identity = 116/129 (89.92%), Postives = 119/129 (92.25%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQ KWKTS T TTRN
Sbjct: 154 KMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQDKWKTSPTKTTRN 213

Query: 138 RANGKLHCREESSRKSPPSSPGYQLRSAPYARERLGIGKMAAEVKNVFCMAHRKPHLNVL 197
           RANGKLHCREESSRKSPPSSPGYQLRS PY+RERLGIGKM A+VKNV  MA  K HLNVL
Sbjct: 214 RANGKLHCREESSRKSPPSSPGYQLRSVPYSRERLGIGKMTAKVKNVLYMAQGKQHLNVL 273

Query: 198 LKHSRSLLR 207
           LKHSRSLLR
Sbjct: 274 LKHSRSLLR 282

[Close]

BLAST of CmoCh03G008320 vs. NCBI nr
Match: gi|778719232|ref|XP_011657983.1| (PREDICTED: protein NEN4 isoform X1 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 5.3e-54
Identity = 113/129 (87.60%), Postives = 119/129 (92.25%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQ KWKTSST TTR+
Sbjct: 154 KMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQEKWKTSSTKTTRS 213

Query: 138 RANGKLHCREESSRKSPPSSPGYQLRSAPYARERLGIGKMAAEVKNVFCMAHRKPHLNVL 197
           RANGKL+CREESSRKSPPSSPGYQLRS PY+RE LGIGKM A+VKN+F MA  K HLNVL
Sbjct: 214 RANGKLNCREESSRKSPPSSPGYQLRSVPYSREGLGIGKMTAKVKNLFYMAQGKQHLNVL 273

Query: 198 LKHSRSLLR 207
           LKHSR LLR
Sbjct: 274 LKHSRLLLR 282

[Close]

BLAST of CmoCh03G008320 vs. NCBI nr
Match: gi|659080138|ref|XP_008440630.1| (PREDICTED: uncharacterized protein LOC103484991 isoform X2 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 3.9e-49
Identity = 108/129 (83.72%), Postives = 110/129 (85.27%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQ KWKTS T TTRN
Sbjct: 154 KMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQDKWKTSPTKTTRN 213

Query: 138 RANGKLHCREESSRKSPPSSPGYQLRSAPYARERLGIGKMAAEVKNVFCMAHRKPHLNVL 197
           RANGKLHCREESSRKSPPSSPGYQLRS PY+RERLGIGK              K HLNVL
Sbjct: 214 RANGKLHCREESSRKSPPSSPGYQLRSVPYSRERLGIGK-------------GKQHLNVL 269

Query: 198 LKHSRSLLR 207
           LKHSRSLLR
Sbjct: 274 LKHSRSLLR 269

[Close]

BLAST of CmoCh03G008320 vs. NCBI nr
Match: gi|449451459|ref|XP_004143479.1| (PREDICTED: protein NEN4 isoform X2 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 1.1e-46
Identity = 105/129 (81.40%), Postives = 109/129 (84.50%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQ KWKTSST TTR+
Sbjct: 154 KMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQEKWKTSSTKTTRS 213

Query: 138 RANGKLHCREESSRKSPPSSPGYQLRSAPYARERLGIGKMAAEVKNVFCMAHRKPHLNVL 197
           RANGKL+CREESSRKSPPSSPGYQLRS PY+RE LGIGK              K HLNVL
Sbjct: 214 RANGKLNCREESSRKSPPSSPGYQLRSVPYSREGLGIGK-------------GKQHLNVL 269

Query: 198 LKHSRSLLR 207
           LKHSR LLR
Sbjct: 274 LKHSRLLLR 269

[Close]

BLAST of CmoCh03G008320 vs. NCBI nr
Match: gi|731397292|ref|XP_010652827.1| (PREDICTED: protein NEN4 isoform X2 [Vitis vinifera])

HSP 1 Score: 179.1 bits (453), Expect = 7.9e-42
Identity = 94/129 (72.87%), Postives = 107/129 (82.95%), Query Frame = 1


Query: 78  EMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTLPSILQGKWKTSSTITTRN 137
           +MA+LA+YF LGQQKHRSLDDVRMNLEVLKHCATVLFLES+LPS+L GKW  S+TITTR+
Sbjct: 168 KMATLATYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPSVLSGKWHDSTTITTRS 227

Query: 138 RANGKLHCREESSRKSPPSSPGYQLRSAPYARERLGIGKMAAEVKNVFCMAHRKPHLNVL 197
           R+NGKL CREESSRKSP +S GYQ R+ PYAR   G+GKM   VKN+ C A  KP LN +
Sbjct: 228 RSNGKLMCREESSRKSPTTSLGYQ-RAVPYARG--GLGKMTERVKNLLCKAREKPALNNI 287

Query: 198 LKHSRSLLR 207
           LKHS SLLR
Sbjct: 288 LKHSHSLLR 293

The following BLAST results are available for this feature:

BLAST of CmoCh03G008320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NEN4_ARATH	5.1e-25	54.20	Protein NEN4 OS=Arabidopsis thaliana GN=NEN4 PE=2 SV=1	[more]
NEN1_ARATH	6.1e-18	57.69	Protein NEN1 OS=Arabidopsis thaliana GN=NEN1 PE=2 SV=1	[more]
NEN3_ARATH	1.1e-16	53.85	Protein NEN3 OS=Arabidopsis thaliana GN=NEN3 PE=2 SV=1	[more]
NEN2_ARATH	5.7e-16	48.72	Protein NEN2 OS=Arabidopsis thaliana GN=NEN2 PE=2 SV=1	[more]

BLAST of CmoCh03G008320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIX8_CUCSA	7.4e-47	81.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500610 PE=4 SV=1	[more]
D7SW01_VITVI	1.4e-37	60.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00950 PE=4 SV=...	[more]
A0A151RRQ1_CAJCA	1.2e-36	67.44	DNA polymerase III polC-type OS=Cajanus cajan GN=KK1_033236 PE=4 SV=1	[more]
V4SW39_9ROSI	1.5e-36	65.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026247mg PE=4 SV=1	[more]
A0A067DVZ1_CITSI	1.5e-36	65.89	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023805mg PE=4 SV=1	[more]

BLAST of CmoCh03G008320 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39810.1	2.9e-26	54.20	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G07710.1	3.4e-19	57.69	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G74390.1	6.5e-18	53.85	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G61390.1	3.2e-17	48.72	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of CmoCh03G008320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080136\|ref\|XP_008440629.1\|	4.3e-56	89.92	PREDICTED: uncharacterized protein LOC103484991 isoform X1 [Cucumis melo]	[more]
gi\|778719232\|ref\|XP_011657983.1\|	5.3e-54	87.60	PREDICTED: protein NEN4 isoform X1 [Cucumis sativus]	[more]
gi\|659080138\|ref\|XP_008440630.1\|	3.9e-49	83.72	PREDICTED: uncharacterized protein LOC103484991 isoform X2 [Cucumis melo]	[more]
gi\|449451459\|ref\|XP_004143479.1\|	1.1e-46	81.40	PREDICTED: protein NEN4 isoform X2 [Cucumis sativus]	[more]
gi\|731397292\|ref\|XP_010652827.1\|	7.9e-42	72.87	PREDICTED: protein NEN4 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR013520	Exonuclease_RNaseT/DNA_pol3

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G008320.1	CmoCh03G008320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 2..80 score: 9.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 4..112 score: 8.18
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 6..81 score: 8.2
None	No IPR available	PANTHER	PTHR30231	DNA POLYMERASE III SUBUNIT EPSILON	coord: 2..157 score: 2.7
None	No IPR available	PANTHER	PTHR30231:SF6	EXONUCLEASE FAMILY PROTEIN-RELATED	coord: 2..157 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G008320	Cucsa.104570	Cucumber (Gy14) v1	cgycmoB0227
CmoCh03G008320	CmaCh07G005290	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G008320	Cla014162	Watermelon (97103) v1	cmowmB623
CmoCh03G008320	Csa6G500610	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G008320	MELO3C007775	Melon (DHL92) v3.5.1	cmomeB605
CmoCh03G008320	ClCG01G018960	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G008320	CSPI06G30420	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G008320	Lsi01G007460	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G008320	Cp4.1LG10g01170	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G008320	Cp4.1LG19g09640	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G008320	MELO3C007775.2	Melon (DHL92) v3.6.1	cmomedB694
CmoCh03G008320	CsaV3_6G045640	Cucumber (Chinese Long) v3	cmocucB0793
CmoCh03G008320	Cla97C01G018430	Watermelon (97103) v2	cmowmbB642
CmoCh03G008320	Bhi03G000936	Wax gourd	cmowgoB0792
CmoCh03G008320	CsGy6G029920	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G008320	Carg16008	Silver-seed gourd	carcmoB1028
CmoCh03G008320	Carg00683	Silver-seed gourd	carcmoB0551

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh03G008320	CmoCh07G005290	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G008320	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G008320	Cucurbita maxima (Rimu)	cmacmoB727
CmoCh03G008320	Cucurbita pepo (Zucchini)	cmocpeB613
CmoCh03G008320	Cucurbita moschata (Rifu)	cmocmoB451