CmoCh03G006910 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G006910
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	LA-related protein 6 LA RNA-binding domain protein
Location	Cmo_Chr03 : 6046039 .. 6052452 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCATTTTTAGAGACAGAGAAACCTTCTGTTTCTTAGTCCCTCTTCCCACTCTCCAACTGACCTACGCCTCTTTTCCTTTTCTCTCTGCGATCCGATCCTTCAAGCTTTTGGAAATCCTTCAGAGGAAGATTTTCCGGCTCCTTTTGTTCATGAATTCTTGTAAGAAGGAAGTAATTTGCTTTTGATTCTGTTGCTTAATTTTGTTTCGCTTTGTCCTGTTTGCCGTCGATCAAGCTACTTACTGCCGTCTGAAAGAAACCCTAATTGCTAATTTGCGATGGCTGCTTCTACTTTACCTGATGCTGATTCGGTGACGGCATCGAGTGCCGATCATTCTTCTCGTAATTCTGGACAGAGTAATAGCAGCAGCCCCAAATCATCATCACGTCGCTCTGGTGGGCGCACGGTGTCTTCTCCGTGGAACCAGATTGTTCGCGGTGAACTAGACACCGCGACGGCTGTTTCATCATCTGTATCTTCGACTACTGTTGTTGAACCTGTAACATTTACTTCTTCTTCTTCTGCTACGTCTGAAGAGCCAGTGGGTGAGTGTTACGATGGCGGGAATGGGTCGTCCGCCAATGCCGGAAAGAAGCCAGTGTGGAATAAACTCGCTAATGGAACTGAGGCTGGGCCTGTCATGGGGGCTGTGTCTTGGCCTGCTTTGTCGGAGTCTGCCAAGGGCACACCTAAATCATCTTCGGATTCAATTAAAAGTTTAGGTGATGGATCCGCTGGCGTGCAGGTATGTTCTATCAACTTTACGAAAAGGATACATTTAGTTTGTTTGCAGGAAAAAATGTTAAAACTTCTGCAATTTATCTCCACGATTAAGCTAATGTTTTCTGTTTTCGAACAAAAAGGTGATATGTTTATGAATAGATTCAAGCAATTGTTTCTAAAATTAGTATGCATACGGAAAATAATGTTTAATTTTGAATGAGCTTTATGAGTACCTTGGATACGCTGAGAAACATTAACCAGCTTGTGGTGGGATATTTTACGCCGATGCTCAGACAGGTTAAGAAATCAACAAAAAAATGTGTCGGACAGGGGATAGCTAGAGTTTTCACTACATTAGTTATTCGTTATATGTTGAATTAAGGGATATTTTACTAATTATTATTATTATTTTTTTCCTTTTGCACATAGGGGACTGGAACTTCATCATCATCATCAAACAAAGAAGGTAATAATGACGTTAGTCCTAATCCTGATTCAACTCTTACTCATCCAATAACTTCGCGGCAGAAATCGTTGAGGCGCAATGGTTCAAATAGTTCATATAACAGTGCCCTCTCTCAGCAGTCTGCTCCTTCAAGTCCTGTAATCGATCCAGCTCCTAACAGTTCTTCGAGGGATCAGACACAGAGAACTGCATTTATATCATCACAATCACATAATGATCATGGTCATCAACAACCACGTAGTTCATTTCGGAGTCGTGGTGGTGGTTCACATCCACGTGGTGATAATTCCCATCATCATAACTATAGTTCTAGGCGTGATCATGATCGTGGAAATCAAGATTGGAATTCAAACCGAAATTTTAATGCACAACCTCATAGAGTGGTTCACAGGTTTATTAGACCACCTCCACCTCCACCTCCTAATACCACTGGCTTTATTTCTTCTCCAACAATGAGGCCTATTGGGGGTCCCCTACCCTTCCCTGGTAGGCTCTACTTTTTTCTGAGGTTTCTTGGTTTTTCTCATGTGAACTTGCCTAATGCATGAATTTTTTTGTAGATTTTGTACCTCCAGTGGTGTATATTGGTCCTCCTCCTCCTCCTCCCCCTCCTCCAGAGGCTCTTAGAGGTGTACCTTTTGTCGCTCCAATACCACCCAATGCAATGTTTTTTCATGGCCCAGATCCTCAGTTGTATGCTATGATAGTGAGTCAGATAGAATACTACTTTAGGTATATTTGATGTGATAGCTTTCTACTTTTTCCTATGATCCTTATATTTGTGTGGTGATTGCACCTTATATTTGTGATAGCTTTCTACTTTTTCTTATGATCCTACTTTTAGTGCTGATTGCACCTTATATTTTTGAACTGCAGTGGTGAAAATTTAGTAAAAGACACTTTCTTGAGGCAGAAAATGGATGAAGATGGCTGGGTTCCGGTTAGACTAATAGCAACCTTCAGCAAGGTGAGTTGCTTTCAGGATTTCAACAAGAATGCATAATTATTTTTTTTCTTGACGATGATGACATGATGACCTTCATTGTCCTGGTATTTTCTGCCTCGTGCCCTGTCTTTTGCATATTTTTCTCTGCTAATATTTTTTTTGAAAAAATTGTTTTTGTAATGTTTTCTTTACTTCCCACTCTGTGCGTGCATGTGAAACTGTTTCAAAGAAAAGTCCTGCCATTGAAACTTGTGGAATCGTTCTTGGAACTCTTTGCCTCTGGACTTATTTGATTTATTAACAATGTCAATGACATGTCTAAAAAAAAAGACAACAAAAAACCACGTACAGCGAACGATTGAAGAAAATAGCATCGGTGGAGAACTGAAATAGCTGCCCAGTTAAAATATTGGTTCTGATTAACGACATCAATTTATAGCAGCATAGTTTTGGCACCTAGAACAGGTTTTCTGTTTGATGGCACTAGGAGTTCAAAATTTTATATAGCTGTACCGTATGATTAATCAAGTATGGATGTAACAGCCAAAACCCATATTGTCTTCTTTGGGCTTTTCTTTCTAGGTTTCCTCTCAAGGTTTTAAAACGCGTCCACTAGGGAGAGATTTCTACACCCTTAAGGAATGCTTTCTTCCACTATCCAACTAATGTGAGATCTCACAATCCACCCCCTTGGGGGCCCATCGTCCTTGTTGGCACATTGCCCCATCTGGCTCTGATATCATTTGTAACTGTCCAAGCCCACCACTAGCACATATATTGTCCTCTTTGGGTTTTTCCCCCAAGGTTTTAAAATGTGTCCACTAGGGAGAGATTTCCACACCTTTAGGAGTGTTTTCTTCCCCTCTCCAACCGAGGGAGGATCTCACAATAGGTGTTAATATTTTGTTGCTTCCCTATAGGTTGTTATGTCATTTTTCCTTTCATTTAATAAACCATGTTTCATTATGTGCGCCTCCACATTTTTTGGGTTGGTGGAATATGAGCTTTGCCAGACAGCATTGGTTAAATATGGCATACATGTTTTATTTTACAAGAATTTTATGTCAAGACATGTTTGGTAGGATATGAATGCAAATGTTGACATTGGGAAGTGATGAGTTTGTTAGGATCTAGGATCCCAATAACAAGAAACACAATGTAGAATTGTTATTGCTATATTGAAAGAGAAATTACAACGTCATAGCCTTTTGAGAGGGCTATGTCTCTCCCAAGTCCCACTTTGTGCTATCTCCAAAATTAACCTCTCTGCATAACATCCCTAACTTCCCTATTTATAACCAAGTCTTCCTAACTAACAACCACTATGCACTTACTAATATTATACTAGTATTCTCAAGATATCACCTATCAATACTCTCATTGAGTTCTAGGTATCCCCTAATTGTACTCGTAGAGTTCTAGATATGTGATGATATTGCATTTAAATGTGAGTGGTGGGACATTTTAAGAGTGATTTTCTCAAGATGTTCAATGTTATTATGAGATATTACCATATGGGTCAAGTTGACTCGATCATGATTATAATTGACATTGAGGGTTTTAGGATTGGCTTCGTGACAAGTCTTGAAAAATTCATTTCTAATACTTCATTAAGAGAATGTGGAAGGCCTACACGGCCTATATGTTAGATGAAGTTGAGGGTTATTATAGACCTCACTATCTACTTATCATCTTTAAGAACATGTCGATTGGGATATTTGGATGAGGTATTAAGCAAGGTTCTGTCTCATTCTGTTTTCGCTGTGTGGGTGAAAATTCTTAAAGATTGGTGGTTCCATTCTCCATCATAATAAATGCCTTTCTTTCTTTCATTTGTACTTCCATTCTCCTTGATGAAAGCAGTTCCTTTCCTTAAAAATGTACTTGCATGTATGACTGCAAGGTTGGTAGTTCTATGCTTTCTGAGATAATTGTGAAGAATGACTTTTGTTAATTTCTTCTGTCAGCAGATAGGCATTTCCTCTTTTTAGATTTCCAAATCATGTTGCTTATAATGGAAGTTAATATGAATAATTCTGATGACCAGAGTGCATATATTGTTCTTATCCTTCAAGAGTATGTCATTTCAAAACTCTTTTGTAGGTTAAACGTCTGACTGAAAATATCCAAACTATATTGGATGCATTGCAATCATCTACTCTTGTGGAAGTAAAGGTCAGTAGACATCAGCTCCTGAATAACCCTTTTCCTCTAATTGTAACTGGAGATTTTAATGGGTCTTGGAGTACTATATTTTCTTATCTAAGTTGGGAAAAAAACACTGAAAGTTAGTTAGTTTGGCATCCTTAAAATGTAATAGTTATAGTAGGAATAGGAATAGACGGAAAATTTACAATCATGTTTCTCTAATTCTCGTATATATAAACTACTTCTGTTTTTTTTTTTTTCTTTTCCTCGTAGGGAGATAAAGTAAGGAGGCGAAATGATTATGATAGATGGATTATTCGACCTGGTCAAGTTCCTAATATTGCAGCCCCATTAAGCCCAGTAAGTTCCAATCAGGATATGTTGGCAGCTGGTGTTCAAGGTATTGCACTAGAGAATATTAATCATAGGGACTCTGAAGGTGGACAGGGTGATGTTCATGTTGAGGCACTCCACAGTCGTAGGCCATCTGGAAATTTGAGTATGCAGGCACAGCCATGTGGTGATGATCGTCCAGGCCAAGTAAATACCAAGGCCGGCCCGGATTGTTCATCGTCTGAAAGGAGTTAGACCAAGTTTGTGCTGTGAACCCATGTCCTTTTGAAGGAAAACTAGATGTGGGTTGTAGAGATTAAGTGAGGAGATGTTAGCGACACGGTTTGCACAACTAAAATTCTCTTCTCTTGATGCCAAGTAAATTGGTAAACTGAAGTTATAGAAGAGAAACAATTTTAAAAAGAAAAAGGAAAAAACTAAAACTTTTAAACTTAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAAAAAAAACTATGACAGAAGTTCCTTTTGTGGTGGAGGGATGCATTTATGGTTTTGTGGGCTGCTGTTGGCTGGCTGGCTGGCTGGCATGACTTGTTTCTCAAGTTCATGTTCTTTTTTGTTGTGATTTTCGTTTTTGGTGATGAATGATGATGGCATGTTACTTAATGTGGAGAATTTTGATTTGCTTCCCTCTGGCTGCCCCTCAGCTTGTTTTTTCTTTATATCTTCGGGGTCAGAGTACTTCGAGTTCTAAGATGAGAGAACACGATGATTCGAGTAAGAACTAGAAGGTTTGGCTTTTTGTTTCTGCAAGGTGAATCAAGAGAGGTTGGTTGGCTTTTGTTGGATATTGTGGAGGCTGGGTTGCAACTGACGTTCTTCTATCTTGAAGGTTCTTCTTTCCATCTTTTGTTATTGTATTTTAGGAAACTTTCCCTGTCATTTGCTCTATAAATACCTTCCAACTTTAAATGCTGCATTAGGAACTTCGGAGGTTGATATTATTTTGCTCGAGATATCTTTATTTTATTTGATACGGTTTGGAACAAATATTTATGAAAATGGGAATTTGCAATACCAGTTAATAGTGCTGCATTTCTCCCGAATGTAACACAAACCATTGTTTTCTCGCATGAACTCTCTCTGTCTCCCTCTCTAAGGTTATTAGGTACCCGAGGAAATAGACGAGAACTTTCAGTTCAGTTTAGTAATCGATAACATGTAAAGATGTGGACCATATTACCATCTCCTCTGTAAGCACTTCTGTTGGTTGACAATCTTCATCGCTCACCCAAAACCGACAAATTGAGCAAGTTTTCTGATTCTGGCATTCATGAAACCACCTCTCGACGCATATCTTGTGAAACTCGTGCTGACAAGGAAGAATTTGCGCTACCTTTCTCTCCATTACGTTTGACAAACACACAGAACACCACTCCCTCTCCATAGCAGCATCATCCAAGGTTGGATGTGCTGAAGTTTCACAACCTTCCTCCTTGGCCCTCTTCATAAAACATGAATCAATAACATCACCACATGATAATGCATCTTTGATACCTGGAAACAATCCGAGGACAATGAAGTTATAGCAGGAGGAGAATATCGTCCTGCACTCCATTCAGTTAAAGGTAAGAAGGATAATTGATTATAGTGCTTTAATAGTAGGGGGTAATTGTGTTTGAGGAATGGTAGTTAGATTGAGAAAGGAGACCCTCAAATTTCAAAGACAGTGGTTGCACCTAAACAAGATTACTACACTTGACCTTTCAAGTTATAGTGTCAAATGCCTGGAGCACATAAGCTGCTATACCCC

mRNA sequence

AGCATTTTTAGAGACAGAGAAACCTTCTGTTTCTTAGTCCCTCTTCCCACTCTCCAACTGACCTACGCCTCTTTTCCTTTTCTCTCTGCGATCCGATCCTTCAAGCTTTTGGAAATCCTTCAGAGGAAGATTTTCCGGCTCCTTTTGTTCATGAATTCTTGTAAGAAGGAAGTAATTTGCTTTTGATTCTGTTGCTTAATTTTGTTTCGCTTTGTCCTGTTTGCCGTCGATCAAGCTACTTACTGCCGTCTGAAAGAAACCCTAATTGCTAATTTGCGATGGCTGCTTCTACTTTACCTGATGCTGATTCGGTGACGGCATCGAGTGCCGATCATTCTTCTCGTAATTCTGGACAGAGTAATAGCAGCAGCCCCAAATCATCATCACGTCGCTCTGGTGGGCGCACGGTGTCTTCTCCGTGGAACCAGATTGTTCGCGGTGAACTAGACACCGCGACGGCTGTTTCATCATCTGTATCTTCGACTACTGTTGTTGAACCTGTAACATTTACTTCTTCTTCTTCTGCTACGTCTGAAGAGCCAGTGGGTGAGTGTTACGATGGCGGGAATGGGTCGTCCGCCAATGCCGGAAAGAAGCCAGTGTGGAATAAACTCGCTAATGGAACTGAGGCTGGGCCTGTCATGGGGGCTGTGTCTTGGCCTGCTTTGTCGGAGTCTGCCAAGGGCACACCTAAATCATCTTCGGATTCAATTAAAAGTTTAGGTGATGGATCCGCTGGCGTGCAGGGGACTGGAACTTCATCATCATCATCAAACAAAGAAGGTAATAATGACGTTAGTCCTAATCCTGATTCAACTCTTACTCATCCAATAACTTCGCGGCAGAAATCGTTGAGGCGCAATGGTTCAAATAGTTCATATAACAGTGCCCTCTCTCAGCAGTCTGCTCCTTCAAGTCCTGTAATCGATCCAGCTCCTAACAGTTCTTCGAGGGATCAGACACAGAGAACTGCATTTATATCATCACAATCACATAATGATCATGGTCATCAACAACCACGTAGTTCATTTCGGAGTCGTGGTGGTGGTTCACATCCACGTGGTGATAATTCCCATCATCATAACTATAGTTCTAGGCGTGATCATGATCGTGGAAATCAAGATTGGAATTCAAACCGAAATTTTAATGCACAACCTCATAGAGTGGTTCACAGGTTTATTAGACCACCTCCACCTCCACCTCCTAATACCACTGGCTTTATTTCTTCTCCAACAATGAGGCCTATTGGGGGTCCCCTACCCTTCCCTGGTAGGCTCTACTTTTTTCTGAGGTTTCTTGATTTTGTACCTCCAGTGGTGTATATTGGTCCTCCTCCTCCTCCTCCCCCTCCTCCAGAGGCTCTTAGAGGTGTACCTTTTGTCGCTCCAATACCACCCAATGCAATGTTTTTTCATGGCCCAGATCCTCAGTTGTATGCTATGATAGTGAGTCAGATAGAATACTACTTTAGTGGTGAAAATTTAGTAAAAGACACTTTCTTGAGGCAGAAAATGGATGAAGATGGCTGGGTTCCGGTTAGACTAATAGCAACCTTCAGCAAGGTTAAACGTCTGACTGAAAATATCCAAACTATATTGGATGCATTGCAATCATCTACTCTTGTGGAAGTAAAGGTCAGTAGACATCAGCTCCTGAATAACCCTTTTCCTCTAATTGTAACTGGAGATTTTAATGGGTCTTGGAGTACTATATTTTCTTATCTAAGTTGGGAAAAAAACACTGAAATTAGTTTGGCATCCTTAAAATGTAATAGTTATAGTAGGAATAGGAATAGACGGAAAATTTACAATCATGTTTCTCTAATTCTCGGAGATAAAGTAAGGAGGCGAAATGATTATGATAGATGGATTATTCGACCTGGTCAAGTTCCTAATATTGCAGCCCCATTAAGCCCAGTAAGTTCCAATCAGGATATGTTGGCAGCTGGTGTTCAAGGTATTGCACTAGAGAATATTAATCATAGGGACTCTGAAGGTGGACAGGGTGATGTTCATGTTGAGGCACTCCACAGTCGTAGGCCATCTGGAAATTTGAGTATGCAGGCACAGCCATGTGGTGATGATCGTCCAGGCCAAGTAAATACCAAGGCCGGCCCGGATTGTTCATCGTCTGAAAGGAGTTAGACCAAGTTTGTGCTGTGAACCCATGTCCTTTTGAAGGAAAACTAGATGTGGGTTGTAGAGATTAAGTGAGGAGATGTTAGCGACACGGTTTGCACAACTAAAATTCTCTTCTCTTGATGCCAAGTAAATTGGTAAACTGAAGTTATAGAAGAGAAACAATTTTAAAAAGAAAAAGGAAAAAACTAAAACTTTTAAACTTAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAAAAAAAACTATGACAGAAGTTCCTTTTGTGGTGGAGGGATGCATTTATGGTTTTGTGGGCTGCTGTTGGCTGGCTGGCTGGCTGGCATGACTTGTTTCTCAAGTTCATGTTCTTTTTTGTTGTGATTTTCGTTTTTGGTGATGAATGATGATGGCATGTTACTTAATGTGGAGAATTTTGATTTGCTTCCCTCTGGCTGCCCCTCAGCTTGTTTTTTCTTTATATCTTCGGGGTCAGAGTACTTCGAGTTCTAAGATGAGAGAACACGATGATTCGAGTAAGAACTAGAAGGTTTGGCTTTTTGTTTCTGCAAGGTGAATCAAGAGAGGTTGGTTGGCTTTTGTTGGATATTGTGGAGGCTGGGTTGCAACTGACGTTCTTCTATCTTGAAGGTTCTTCTTTCCATCTTTTGTTATTGTATTTTAGGAAACTTTCCCTGTCATTTGCTCTATAAATACCTTCCAACTTTAAATGCTGCATTAGGAACTTCGGAGGTTGATATTATTTTGCTCGAGATATCTTTATTTTATTTGATACGGTTTGGAACAAATATTTATGAAAATGGGAATTTGCAATACCAGTTAATAGTGCTGCATTTCTCCCGAATGTAACACAAACCATTGTTTTCTCGCATGAACTCTCTCTGTCTCCCTCTCTAAGGTTATTAGGTACCCGAGGAAATAGACGAGAACTTTCAGTTCAGTTTAGTAATCGATAACATGTAAAGATGTGGACCATATTACCATCTCCTCTGTAAGCACTTCTGTTGGTTGACAATCTTCATCGCTCACCCAAAACCGACAAATTGAGCAAGTTTTCTGATTCTGGCATTCATGAAACCACCTCTCGACGCATATCTTGTGAAACTCGTGCTGACAAGGAAGAATTTGCGCTACCTTTCTCTCCATTACGTTTGACAAACACACAGAACACCACTCCCTCTCCATAGCAGCATCATCCAAGGTTGGATGTGCTGAAGTTTCACAACCTTCCTCCTTGGCCCTCTTCATAAAACATGAATCAATAACATCACCACATGATAATGCATCTTTGATACCTGGAAACAATCCGAGGACAATGAAGTTATAGCAGGAGGAGAATATCGTCCTGCACTCCATTCAGTTAAAGGTAAGAAGGATAATTGATTATAGTGCTTTAATAGTAGGGGGTAATTGTGTTTGAGGAATGGTAGTTAGATTGAGAAAGGAGACCCTCAAATTTCAAAGACAGTGGTTGCACCTAAACAAGATTACTACACTTGACCTTTCAAGTTATAGTGTCAAATGCCTGGAGCACATAAGCTGCTATACCCC

Coding sequence (CDS)

ATGGCTGCTTCTACTTTACCTGATGCTGATTCGGTGACGGCATCGAGTGCCGATCATTCTTCTCGTAATTCTGGACAGAGTAATAGCAGCAGCCCCAAATCATCATCACGTCGCTCTGGTGGGCGCACGGTGTCTTCTCCGTGGAACCAGATTGTTCGCGGTGAACTAGACACCGCGACGGCTGTTTCATCATCTGTATCTTCGACTACTGTTGTTGAACCTGTAACATTTACTTCTTCTTCTTCTGCTACGTCTGAAGAGCCAGTGGGTGAGTGTTACGATGGCGGGAATGGGTCGTCCGCCAATGCCGGAAAGAAGCCAGTGTGGAATAAACTCGCTAATGGAACTGAGGCTGGGCCTGTCATGGGGGCTGTGTCTTGGCCTGCTTTGTCGGAGTCTGCCAAGGGCACACCTAAATCATCTTCGGATTCAATTAAAAGTTTAGGTGATGGATCCGCTGGCGTGCAGGGGACTGGAACTTCATCATCATCATCAAACAAAGAAGGTAATAATGACGTTAGTCCTAATCCTGATTCAACTCTTACTCATCCAATAACTTCGCGGCAGAAATCGTTGAGGCGCAATGGTTCAAATAGTTCATATAACAGTGCCCTCTCTCAGCAGTCTGCTCCTTCAAGTCCTGTAATCGATCCAGCTCCTAACAGTTCTTCGAGGGATCAGACACAGAGAACTGCATTTATATCATCACAATCACATAATGATCATGGTCATCAACAACCACGTAGTTCATTTCGGAGTCGTGGTGGTGGTTCACATCCACGTGGTGATAATTCCCATCATCATAACTATAGTTCTAGGCGTGATCATGATCGTGGAAATCAAGATTGGAATTCAAACCGAAATTTTAATGCACAACCTCATAGAGTGGTTCACAGGTTTATTAGACCACCTCCACCTCCACCTCCTAATACCACTGGCTTTATTTCTTCTCCAACAATGAGGCCTATTGGGGGTCCCCTACCCTTCCCTGGTAGGCTCTACTTTTTTCTGAGGTTTCTTGATTTTGTACCTCCAGTGGTGTATATTGGTCCTCCTCCTCCTCCTCCCCCTCCTCCAGAGGCTCTTAGAGGTGTACCTTTTGTCGCTCCAATACCACCCAATGCAATGTTTTTTCATGGCCCAGATCCTCAGTTGTATGCTATGATAGTGAGTCAGATAGAATACTACTTTAGTGGTGAAAATTTAGTAAAAGACACTTTCTTGAGGCAGAAAATGGATGAAGATGGCTGGGTTCCGGTTAGACTAATAGCAACCTTCAGCAAGGTTAAACGTCTGACTGAAAATATCCAAACTATATTGGATGCATTGCAATCATCTACTCTTGTGGAAGTAAAGGTCAGTAGACATCAGCTCCTGAATAACCCTTTTCCTCTAATTGTAACTGGAGATTTTAATGGGTCTTGGAGTACTATATTTTCTTATCTAAGTTGGGAAAAAAACACTGAAATTAGTTTGGCATCCTTAAAATGTAATAGTTATAGTAGGAATAGGAATAGACGGAAAATTTACAATCATGTTTCTCTAATTCTCGGAGATAAAGTAAGGAGGCGAAATGATTATGATAGATGGATTATTCGACCTGGTCAAGTTCCTAATATTGCAGCCCCATTAAGCCCAGTAAGTTCCAATCAGGATATGTTGGCAGCTGGTGTTCAAGGTATTGCACTAGAGAATATTAATCATAGGGACTCTGAAGGTGGACAGGGTGATGTTCATGTTGAGGCACTCCACAGTCGTAGGCCATCTGGAAATTTGAGTATGCAGGCACAGCCATGTGGTGATGATCGTCCAGGCCAAGTAAATACCAAGGCCGGCCCGGATTGTTCATCGTCTGAAAGGAGTTAG

Homology

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BLAST of CmoCh03G006910 vs. Swiss-Prot
Match: LRP1C_ARATH (La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.3e-44
Identity = 178/469 (37.95%), Postives = 245/469 (52.24%), Query Frame = 1


Query: 14  ASSADHSSRNSGQSNSSSPKSS---SRRSGGRTVSSPWNQIVRGELD-----TATAVSSS 73
           ASS+    R SG  N  SP +S   S R   R VSSPW QIVRGE +      A A  SS
Sbjct: 10  ASSSMSPRRISG--NHGSPTASVAQSPRRPSRQVSSPWTQIVRGESEPIAAAAAVAGPSS 69

Query: 74  VSSTTVVEPVTFTSSSSATS-----EEPVGECYDGGNGSSANAGKKPVWNKLANG-TEAG 133
             S   +EP+   S ++ T+     E   G+     +G   NAGKKPVW + +NG +E G
Sbjct: 70  PQSRAPIEPIASVSVAAPTAAVLTVEAAAGDEKSEASGGQDNAGKKPVWKRPSNGASEVG 129

Query: 134 PVMGAVSWPALSESAKG-TPKSSSDSIKSLGD------GSAGV---QGTGTSSSSSNKEG 193
           PVMGA SWPALSE+ K  + KSSSDS+KSLGD       S+ V   QG   +S  + K+ 
Sbjct: 130 PVMGASSWPALSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPVTQGIANASVPAPKQA 189

Query: 194 NNDVSPNPDSTLTHPITSRQKSLR-RNGSNSSYNSALSQQSAPSSPVIDPAPNSSSRDQT 253
               +PNP      P  SRQ+S + RNG++ S N  +SQ SA  S    P+ N S R Q 
Sbjct: 190 GR-ANPNPT-----PNHSRQRSFKQRNGASGSANGTVSQPSAQGSFTELPSHNPSPRGQN 249

Query: 254 QRTAFISSQSHNDHGHQQPRSSFRSRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWNSNRN 313
           Q+  F +SQ+H    +   R S+R++ G        +HH ++  RR+ + GNQ+W   R+
Sbjct: 250 QKNGF-ASQNHGGTENPSQRDSYRNQNG--------NHHQSHGGRRNQEHGNQNWTFQRS 309

Query: 314 F-----NAQPHRVVHRFIRPPPPPPPNTTGFISSPTMRPIGGPLPFPGRLYFFLRFLDFV 373
           F     NAQ  R    F+R P P       F+++   +P    +PFP      L    + 
Sbjct: 310 FNGREGNAQSQRGTPAFVRHPSPTVQPIPQFMAA---QPFPSHIPFPTE----LAQSSYY 369

Query: 374 PPVVYIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEYYFSGENLV 433
           P + Y+ P P  P                    F+H  DP L+  +  QI+YYFS ENL+
Sbjct: 370 PRMPYMTPIPHGP------------------QFFYHYQDPPLHMKLHKQIQYYFSDENLI 429

Query: 434 KDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVK 453
            D +LR  M+ +G+VP+R++A F KV  LT+NIQ I++ALQ+S  VEV+
Sbjct: 430 TDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQ 436

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BLAST of CmoCh03G006910 vs. Swiss-Prot
Match: LRP1B_ARATH (La-related protein 1B OS=Arabidopsis thaliana GN=LARP1B PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-26
Identity = 164/465 (35.27%), Postives = 236/465 (50.75%), Query Frame = 1


Query: 11  SVTASSADHSSRNSGQSNSSSPKSSSRRSGGRTVSSPWNQIVRGELDTATAVSSSVSSTT 70
           + TASSA +S+     S  S   S SR   G   SSPW       L  + +      S +
Sbjct: 2   ATTASSAANSA-----SRFSIDSSISRSRHGD--SSPW-------LLPSDSHDHPTLSLS 61

Query: 71  VVEPVTFTSSSSATSEEPVGECYDGGNGSSA--NAGKKP--VWNKLANGT--EAGPVMGA 130
             +P +  S S  T           GN SS   NA KKP  VWN  ++ +  + GPVMGA
Sbjct: 62  QDDPFSAPSVSPPT-----------GNNSSDYDNADKKPPPVWNMPSSNSSSDVGPVMGA 121

Query: 131 V-SWPALSESAKGTP-KSSS-DSIKSLGDGSAGV----QGTGTSSSSSNKEGNNDVSPNP 190
             SWPALS SA+ +  KS S D+ K   DGS+      Q T  +S+++N   +   + + 
Sbjct: 122 AESWPALSLSARSSSIKSPSLDASKPFPDGSSSSIPPPQATSNTSTNANAGSSVSATSSE 181

Query: 191 DSTLTHPITSRQKSLRRNGSNSSYNSALSQQSAPSSPVIDPAPNSSSRDQTQRTAFISSQ 250
           +S + +   S++K  RRN + SS        S+ SS V + AP  ++RDQ       S +
Sbjct: 182 NSAVNN---SQRKPFRRNNNTSS--------SSTSSNVSNAAP-LNTRDQNH-----SQR 241

Query: 251 SHNDHGHQQPRSSFRSRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWNSNRNFNA-----Q 310
                G    R+S R+R   S+PRG+  HH N   RR+++ GNQ   S+RN++      Q
Sbjct: 242 GGGSFGSGNFRNSQRNRNSSSYPRGEGLHHGN---RRNYEHGNQSGFSHRNYSGRDMHLQ 301

Query: 311 PHRVVHRFIRP-----PPPPPPNTTGFISSPTMRPIGGPLPFPGRLYFFLRFLDFVPPVV 370
           P R V   IRP     PP  P ++  ++++P +   GGP+ +P          D+   V 
Sbjct: 302 PQRGVG-MIRPQMLMGPPSFPASSAQYMAAPQLGSYGGPIIYP----------DYAQHVF 361

Query: 371 YIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEYYFSGENLVKDTF 430
                P P P P  L     V P P   M+F   D  LY  I++Q+EYYFS +NL +D  
Sbjct: 362 M----PHPSPDPMGL-----VGPFPLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDEH 401

Query: 431 LRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVK 453
           LR +M+++GWVPVR+IA F ++  LT NIQTIL+AL+SS +VE++
Sbjct: 422 LRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVEIQ 401

[Close]

BLAST of CmoCh03G006910 vs. Swiss-Prot
Match: LAR1B_HUMAN (La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-11
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 1


Query: 366 PFVAPIPPNAMFFH--GPDPQLYAM--------IVSQIEYYFSGENLVKDTFLRQKMDED 425
           PF   +  + M+++  G   Q+Y +        I  QIEYYFS ENL +D FLR KMDE 
Sbjct: 186 PFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQ 245

Query: 426 GWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEV 452
           G++P+ LIA F +V+ LT N+  IL+AL+ ST VE+
Sbjct: 246 GFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEI 281

[Close]

BLAST of CmoCh03G006910 vs. Swiss-Prot
Match: LARP1_HUMAN (La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 7.4e-11
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1


Query: 389 IVSQIEYYFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTL 448
           I  QIEYYFS +NL +D FLR+KMD DG++P+ LIA+F +V+ LT +I  I  AL+ S +
Sbjct: 407 IKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKV 466

Query: 449 VEV---KVSRHQLLNN-PFPLIV 468
           VE+   KV R +     P P IV
Sbjct: 467 VEIVDEKVRRREEPEKWPLPPIV 489

[Close]

BLAST of CmoCh03G006910 vs. Swiss-Prot
Match: LARP1_MOUSE (La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=3)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-10
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 389 IVSQIEYYFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTL 448
           I  QIEYYFS +NL +D FLR+KMD DG++P+ LIA+F +V+ LT +I  I  AL+ S +
Sbjct: 382 IKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKV 441

Query: 449 VEV---KVSRHQ 458
           VE+   KV R +
Sbjct: 442 VEMVEEKVRRRE 453

[Close]

BLAST of CmoCh03G006910 vs. TrEMBL
Match: A0A0A0KJG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507180 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.0e-115
Identity = 217/261 (83.14%), Postives = 236/261 (90.42%), Query Frame = 1


Query: 192 LRRNGSNSSYNSALSQQSAPSSPVIDPAPNSSSRDQTQRTAFISSQSHNDHGHQQPRSSF 251
           +RRNGS++SYNS+L QQSAPSSPVID APN+S +DQTQRT F+SSQSH+DHGHQQPR+S+
Sbjct: 1   MRRNGSSNSYNSSLPQQSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSY 60

Query: 252 RSRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWNSNRNFNAQPHRVVHRFIRPPPPPPPNT 311
           RSRGGGSHPRGDNSHHHNY SRRDHDRGNQDWNSNRN+NAQPHRVVHRFIRP PPPPPNT
Sbjct: 61  RSRGGGSHPRGDNSHHHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNT 120

Query: 312 TGFISSPTMRPIGGPLPFPGRLYFFLRFLDFVPPVVYIGPPPPPPPPPEALRGVPFVAPI 371
           TG+ISSPTMR IGGPLPFP          DF PPVVYIGPPPP     EALRGVPFVAPI
Sbjct: 121 TGYISSPTMRAIGGPLPFP----------DFAPPVVYIGPPPP-----EALRGVPFVAPI 180

Query: 372 PPNAMFFHGPDPQLYAMIVSQIEYYFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKR 431
            PNAMFFHGPDPQLYAMIVSQIEYYFSGENL+KDTFLRQ M+E+GWVPV+LIA+FSKV+R
Sbjct: 181 SPNAMFFHGPDPQLYAMIVSQIEYYFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQR 240

Query: 432 LTENIQTILDALQSSTLVEVK 453
           LTENIQTILDALQSST+VEVK
Sbjct: 241 LTENIQTILDALQSSTVVEVK 246

[Close]

BLAST of CmoCh03G006910 vs. TrEMBL
Match: A0A067FV98_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039779mg PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.8e-87
Identity = 231/484 (47.73%), Postives = 302/484 (62.40%), Query Frame = 1


Query: 54  GELDTATAVSSSVSSTTVVEPVTFTSSSSATSEEPVGECYDGGNGSSANAGKKPVWNKL- 113
           G    A   SSS  ST+V+E     ++++A  E+   EC +G  GS     K+P WN+  
Sbjct: 2   GREPIALVSSSSSQSTSVIELAA--AAAAAADEDNGAECGNGNAGS-----KRPPWNRQP 61

Query: 114 ANGT-EAGPVMGAVSWPALSESAKGTP---KSSSDSIKSLGDGSAG---VQGTGTSSSSS 173
           +NG  E  PVMGA SWPALSE+ +G+    KSSSDS+K   DGS+    +QGT  ++SSS
Sbjct: 62  SNGAAEMEPVMGAHSWPALSETTRGSSSSTKSSSDSLKGSVDGSSSSSVLQGTAATNSSS 121

Query: 174 NKEGNNDVSPNPDSTLTHPITSRQKSLRRNGSNSSYNSALSQQSAPSSPVIDPAPNSSS- 233
           +K+ +N+ +PN  ST  H  ++RQ+S++RN S+SS N  L Q  A    V++   N+ S 
Sbjct: 122 HKQVSNNANPN--STTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNNPSP 181

Query: 234 RDQTQRTAFISSQSHNDHGHQQPRSSFRSRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWN 293
           RD TQ++ F  SQ H  + H  PR SF+ R G  HPRGD SHHHNY  RRD DRGNQDWN
Sbjct: 182 RDHTQKSGF-GSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRGNQDWN 241

Query: 294 SNRNFNA-----QPHRVVHRFIR----PPPPPPPNTTGFISSPTMRPIGGPLPFPGRLYF 353
           S+RN++      QP RVV RF R    PPPPPPP+++ FI  P +RP G P+ FP     
Sbjct: 242 SHRNYSGRDAHMQPQRVVQRFTRHPPPPPPPPPPSSSPFIPPPPVRPFGSPIGFP----- 301

Query: 354 FLRFLDFVPPVVYIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEY 413
                +F  PV Y+   PP     EALRGVPFVAPIPP+A+FF  PDPQL++ IV+QI+Y
Sbjct: 302 -----EFASPVYYVAAAPP-----EALRGVPFVAPIPPHAVFFPAPDPQLHSRIVTQIDY 361

Query: 414 YFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVKVSR 473
           YFS ENLVKDTFLRQ MD+ GWVP+RLIA F+KV  LT+NIQ ILDAL+SST+VEV+  R
Sbjct: 362 YFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEVQGDR 421

Query: 474 HQLLNNPFPLIVTGDFNGSWSTIFSYLSWEKNTEISLASLKCNSYSRNRNRRKIYNHVSL 520
            +  N+    I+     G +S++ S  S  K + I + S +  S S +   +K  NH   
Sbjct: 422 IRKRNDWMRWIMP---PGKFSSLPSPQSQGK-SGIDMLSAQVQSISLD---QKTLNHSRS 453

[Close]

BLAST of CmoCh03G006910 vs. TrEMBL
Match: V4SDL2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025634mg PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.3e-86
Identity = 225/452 (49.78%), Postives = 290/452 (64.16%), Query Frame = 1


Query: 24  SGQSNSSSPK-SSSRRSGGRTVSSPWNQIVRGELDTATAVSSSVSSTTVVEPVTFTSSSS 83
           S  +NS+ P   +S  +G     +PW   V G    A   SSS  ST+V+E     ++++
Sbjct: 5   SNITNSNFPSIDNSVATGSGQPGAPWP--VFGREPIALVSSSSSQSTSVIE---LAAAAA 64

Query: 84  ATSEEPVGECYDGGNGSSANAGKKPVWNKL-ANGT-EAGPVMGAVSWPALSESAKGTP-- 143
           A ++E  G  +  GN  S    K+P WN+  +NG  E  PVMGA SWPALSE+ +G+   
Sbjct: 65  AAADEDNGAEFGNGNAGS----KRPPWNRQPSNGAAEMEPVMGAHSWPALSETTRGSSSS 124

Query: 144 -KSSSDSIKSLGDGSAG----VQGTGTSSSSSNKEGNNDVSPNPDSTLTHPITSRQKSLR 203
            KSSSDS+K L DGS+     +QGT T++SSS+K+ +N+ +PN  ST  H   +RQ+S++
Sbjct: 125 TKSSSDSLKGLVDGSSSSSSVLQGTATTNSSSHKQVSNNANPN--STTNHAAPNRQRSMK 184

Query: 204 RNGSNSSYNSALSQQSAPSSPVIDPAPNSSS-RDQTQRTAFISSQSHNDHGHQQPRSSFR 263
           RN S+SS N  L Q  A    V++   N+ S RD TQ++ F  SQ H  + H  PR SF+
Sbjct: 185 RNNSHSSSNGGLPQPPASQGSVVEGRSNNPSPRDHTQKSGF-GSQFHGGNDHPHPRGSFK 244

Query: 264 SRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWNSNRNFNA-----QPHRVVHRFIR----P 323
            R G  HPRGD SHHHNY  RRD DRGNQDWNS+RN++      QP RVV RF R    P
Sbjct: 245 HRNGNQHPRGDGSHHHNYGGRRDQDRGNQDWNSHRNYSGRDAHMQPQRVVQRFTRHPPPP 304

Query: 324 PPPPPPNTTGFISSPTMRPIGGPLPFPGRLYFFLRFLDFVPPVVYIGPPPPPPPPPEALR 383
           PPPPPP+++ FI  P +RP G P+ FP          +F  PV Y+   PP     EALR
Sbjct: 305 PPPPPPSSSPFIPPPPVRPFGSPIGFP----------EFASPVYYVAAAPP-----EALR 364

Query: 384 GVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEYYFSGENLVKDTFLRQKMDEDGWVPVRLI 443
           GVPFVAPIPP+A+FF  PDPQL++ IV+QI+YYFS ENLVKDTFLRQ MD+ GWVP+RLI
Sbjct: 365 GVPFVAPIPPHAVFFPAPDPQLHSRIVTQIDYYFSNENLVKDTFLRQNMDDQGWVPIRLI 424

Query: 444 ATFSKVKRLTENIQTILDALQSSTLVEVKVSR 456
           A F+KV  LT+NIQ ILDAL+SST+VEV+  R
Sbjct: 425 AGFNKVSLLTDNIQLILDALRSSTVVEVQGDR 429

[Close]

BLAST of CmoCh03G006910 vs. TrEMBL
Match: A0A061DF68_THECC (Winged-helix DNA-binding transcription factor family protein, putative OS=Theobroma cacao GN=TCM_000149 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.7e-83
Identity = 226/462 (48.92%), Postives = 292/462 (63.20%), Query Frame = 1


Query: 11  SVTASSADHSSRNSGQSNSSSPKSSSRRSGGRTVSSPWNQIVRGELDTATAVSSSVSSTT 70
           S   ++A+HS         SSP  S R +  R VSSPW QIVRGE +    V  S S+++
Sbjct: 13  SAAVTAANHSP--------SSPNQSHRAT--RVVSSPWTQIVRGESEPIAGVPLSPSTSS 72

Query: 71  VVEPVTFTSS---SSATSEEPVGECYDGGNGSSANAGKKPVWNKLANG-TEAGPVMGAVS 130
              P+        ++A  EE V    +GG+G + NAGK+P WNK +NG  E G VMGA  
Sbjct: 73  SSSPLAAVIEPPVNAAVEEEGV---ENGGSGPNGNAGKRPAWNKPSNGAAEFGAVMGAHM 132

Query: 131 WPALSESAKGTPKSSSDSIKSLGDGSAG-----VQGTGTS-SSSSNKEGNNDVSPNPDST 190
           WPALSESA+ + KSSSDS K+  DGS+       QG+G + SSSS K+ +N+V+ N ++T
Sbjct: 133 WPALSESARVSSKSSSDSSKASPDGSSSPAVPVSQGSGNALSSSSQKQVSNNVNSNSNAT 192

Query: 191 LTHPITSRQKSLRRNGSNSSYNSALSQ-QSAPSSPVIDPAPNSSSRDQTQRTAFISSQSH 250
             + +  RQ+S++RN +NS+ N  L+Q Q  P  PV +   N+ SRD  QR  F+S    
Sbjct: 193 PNNAMPVRQRSMKRNSNNSASNGGLTQPQPQPQGPVAEATANNPSRDHIQRGGFVSQPHS 252

Query: 251 NDHGHQQPRSSFRSRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWNSNRNFNA-----QPH 310
             + H  PR+SFR+R GG HPRGD SHH NY  RR+ D GNQDWN  RNFN+     QP 
Sbjct: 253 GGNDHPHPRNSFRNRNGGPHPRGDGSHHQNYGGRRNQDHGNQDWN-GRNFNSRDGHMQP- 312

Query: 311 RVVHRFIR-PPPPPPPNTTGFISSPTMRPIGGPLPFPGRLYFFLRFLDFVPPVVYIGPPP 370
           RVV R +R PPPPPPPNT  FI+ P +RP G P+ FP            +P  VY+    
Sbjct: 313 RVVSRLMRHPPPPPPPNTAPFITPPPVRPFGTPMGFPE-----------LPSHVYL---- 372

Query: 371 PPPPPPEALRGVPFVAPIPPNAMFFHGPDP---QLYAMIVSQIEYYFSGENLVKDTFLRQ 430
            P PPPE+LRGVPFVAP+P   +FF  P+P   QL+A IV+QI+YYFS ENL+KDT+LRQ
Sbjct: 373 LPAPPPESLRGVPFVAPMP--QVFFPAPEPQDHQLHARIVNQIDYYFSNENLIKDTYLRQ 432

Query: 431 KMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVK 453
            MD+ GWV ++LIA F KV  LT+NIQ ILDAL+SST+VEV+
Sbjct: 433 NMDDQGWVSIKLIAGFKKVSFLTDNIQLILDALRSSTVVEVQ 442

[Close]

BLAST of CmoCh03G006910 vs. TrEMBL
Match: E0CU57_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0349g00060 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.2e-77
Identity = 229/479 (47.81%), Postives = 290/479 (60.54%), Query Frame = 1


Query: 13  TASSADHSSRNSGQSNSSSPKSSSRRSGGR-TVSSPWNQIVRGELDTATAVSSS-VSSTT 72
           +A +  H S        SSPKS  RRS  R  V+SPW Q+VRGE ++ TA  SS VSS  
Sbjct: 7   SAPTGPHLSPRYSPDGHSSPKS--RRSAARGAVTSPWTQVVRGESESITAAPSSPVSSQE 66

Query: 73  VVEPVTFTSSSSATSEEPVG-----------ECYDGGNGSSANAGKKPVWNKLANGT-EA 132
            +   +  S + ATS+ P             E  D GNG   NAGK+P WNK +NG  E 
Sbjct: 67  QIVVSSDCSPTKATSDSPASPEDSSQVEAQLESSDNGNG---NAGKRPAWNKPSNGVAEV 126

Query: 133 GPVMGAVSWPALSESAKGTPKSSSDSIKSLGDGSAG-------VQGTGTSSSSSNKEGNN 192
           GPVMGA SWPALSESA+ + KS+SDS+KS  DGS         VQG+G +SS S+K+ NN
Sbjct: 127 GPVMGASSWPALSESARASAKSASDSLKSPTDGSISTPPAQVHVQGSGNASSPSHKQVNN 186

Query: 193 DVSPNPDSTLTHPITSRQKSLRR---NGSNSSYNSALSQQSAPSSPVIDPAPNSSS-RDQ 252
           +  P P ST +H + +RQKS++R   +G +SS N+ L Q +AP  PV++  PN+SS RD 
Sbjct: 187 N--PIPSSTPSHALPTRQKSMKRGDRSGGSSSANAGLPQPAAPQGPVMEVPPNNSSPRDH 246

Query: 253 T---------QRTAFI-SSQSHNDHGHQQPRSSFRSRGGGSHPRGDNSHHHNYSSRRDHD 312
           T         QR  F+  S S ND+ HQ  R S+R      H RGD SHHH Y  RRD D
Sbjct: 247 TNRSIHPEGGQRGGFVPQSHSGNDYPHQ--RGSYRKGNSAPHSRGDGSHHHGYGGRRDQD 306

Query: 313 RGNQDWNSNRNFNAQPH---RVVHR-FIRPPPPPPPNTTGFISSPTMRPIGGPLPFPGRL 372
           R N DWN +RNFN +PH   RVV R FIRPP     ++  FI+ P +RP G P+      
Sbjct: 307 RVNHDWNPHRNFNREPHMQPRVVARGFIRPPSH---SSAQFIAPPHLRPFGNPI------ 366

Query: 373 YFFLRFLDFVPPVVYIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQI 432
             +      V  VVY+     P P  + LR VPFVAP+P + MFF   D QL+A +V+QI
Sbjct: 367 -LYQELASPVSQVVYV-----PAPHADPLRTVPFVAPMP-HPMFFPPQDHQLHAKLVAQI 426

Query: 433 EYYFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVK 453
           +YYFS ENL+KD +LRQ MDE GWVPV+LIA F KVK LTENIQ IL+A+++ST+VEV+
Sbjct: 427 DYYFSNENLIKDIYLRQNMDEQGWVPVKLIAGFKKVKLLTENIQLILEAVRTSTVVEVQ 460

[Close]

BLAST of CmoCh03G006910 vs. TAIR10
Match: AT4G35890.1 (AT4G35890.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 182.6 bits (462), Expect = 7.6e-46
Identity = 178/469 (37.95%), Postives = 245/469 (52.24%), Query Frame = 1


Query: 14  ASSADHSSRNSGQSNSSSPKSS---SRRSGGRTVSSPWNQIVRGELD-----TATAVSSS 73
           ASS+    R SG  N  SP +S   S R   R VSSPW QIVRGE +      A A  SS
Sbjct: 10  ASSSMSPRRISG--NHGSPTASVAQSPRRPSRQVSSPWTQIVRGESEPIAAAAAVAGPSS 69

Query: 74  VSSTTVVEPVTFTSSSSATS-----EEPVGECYDGGNGSSANAGKKPVWNKLANG-TEAG 133
             S   +EP+   S ++ T+     E   G+     +G   NAGKKPVW + +NG +E G
Sbjct: 70  PQSRAPIEPIASVSVAAPTAAVLTVEAAAGDEKSEASGGQDNAGKKPVWKRPSNGASEVG 129

Query: 134 PVMGAVSWPALSESAKG-TPKSSSDSIKSLGD------GSAGV---QGTGTSSSSSNKEG 193
           PVMGA SWPALSE+ K  + KSSSDS+KSLGD       S+ V   QG   +S  + K+ 
Sbjct: 130 PVMGASSWPALSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPVTQGIANASVPAPKQA 189

Query: 194 NNDVSPNPDSTLTHPITSRQKSLR-RNGSNSSYNSALSQQSAPSSPVIDPAPNSSSRDQT 253
               +PNP      P  SRQ+S + RNG++ S N  +SQ SA  S    P+ N S R Q 
Sbjct: 190 GR-ANPNPT-----PNHSRQRSFKQRNGASGSANGTVSQPSAQGSFTELPSHNPSPRGQN 249

Query: 254 QRTAFISSQSHNDHGHQQPRSSFRSRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWNSNRN 313
           Q+  F +SQ+H    +   R S+R++ G        +HH ++  RR+ + GNQ+W   R+
Sbjct: 250 QKNGF-ASQNHGGTENPSQRDSYRNQNG--------NHHQSHGGRRNQEHGNQNWTFQRS 309

Query: 314 F-----NAQPHRVVHRFIRPPPPPPPNTTGFISSPTMRPIGGPLPFPGRLYFFLRFLDFV 373
           F     NAQ  R    F+R P P       F+++   +P    +PFP      L    + 
Sbjct: 310 FNGREGNAQSQRGTPAFVRHPSPTVQPIPQFMAA---QPFPSHIPFPTE----LAQSSYY 369

Query: 374 PPVVYIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEYYFSGENLV 433
           P + Y+ P P  P                    F+H  DP L+  +  QI+YYFS ENL+
Sbjct: 370 PRMPYMTPIPHGP------------------QFFYHYQDPPLHMKLHKQIQYYFSDENLI 429

Query: 434 KDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVK 453
            D +LR  M+ +G+VP+R++A F KV  LT+NIQ I++ALQ+S  VEV+
Sbjct: 430 TDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQ 436

[Close]

BLAST of CmoCh03G006910 vs. TAIR10
Match: AT5G66100.1 (AT5G66100.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-27
Identity = 164/465 (35.27%), Postives = 236/465 (50.75%), Query Frame = 1


Query: 11  SVTASSADHSSRNSGQSNSSSPKSSSRRSGGRTVSSPWNQIVRGELDTATAVSSSVSSTT 70
           + TASSA +S+     S  S   S SR   G   SSPW       L  + +      S +
Sbjct: 3   ATTASSAANSA-----SRFSIDSSISRSRHGD--SSPW-------LLPSDSHDHPTLSLS 62

Query: 71  VVEPVTFTSSSSATSEEPVGECYDGGNGSSA--NAGKKP--VWNKLANGT--EAGPVMGA 130
             +P +  S S  T           GN SS   NA KKP  VWN  ++ +  + GPVMGA
Sbjct: 63  QDDPFSAPSVSPPT-----------GNNSSDYDNADKKPPPVWNMPSSNSSSDVGPVMGA 122

Query: 131 V-SWPALSESAKGTP-KSSS-DSIKSLGDGSAGV----QGTGTSSSSSNKEGNNDVSPNP 190
             SWPALS SA+ +  KS S D+ K   DGS+      Q T  +S+++N   +   + + 
Sbjct: 123 AESWPALSLSARSSSIKSPSLDASKPFPDGSSSSIPPPQATSNTSTNANAGSSVSATSSE 182

Query: 191 DSTLTHPITSRQKSLRRNGSNSSYNSALSQQSAPSSPVIDPAPNSSSRDQTQRTAFISSQ 250
           +S + +   S++K  RRN + SS        S+ SS V + AP  ++RDQ       S +
Sbjct: 183 NSAVNN---SQRKPFRRNNNTSS--------SSTSSNVSNAAP-LNTRDQNH-----SQR 242

Query: 251 SHNDHGHQQPRSSFRSRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWNSNRNFNA-----Q 310
                G    R+S R+R   S+PRG+  HH N   RR+++ GNQ   S+RN++      Q
Sbjct: 243 GGGSFGSGNFRNSQRNRNSSSYPRGEGLHHGN---RRNYEHGNQSGFSHRNYSGRDMHLQ 302

Query: 311 PHRVVHRFIRP-----PPPPPPNTTGFISSPTMRPIGGPLPFPGRLYFFLRFLDFVPPVV 370
           P R V   IRP     PP  P ++  ++++P +   GGP+ +P          D+   V 
Sbjct: 303 PQRGVG-MIRPQMLMGPPSFPASSAQYMAAPQLGSYGGPIIYP----------DYAQHVF 362

Query: 371 YIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEYYFSGENLVKDTF 430
                P P P P  L     V P P   M+F   D  LY  I++Q+EYYFS +NL +D  
Sbjct: 363 M----PHPSPDPMGL-----VGPFPLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDEH 402

Query: 431 LRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVK 453
           LR +M+++GWVPVR+IA F ++  LT NIQTIL+AL+SS +VE++
Sbjct: 423 LRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVEIQ 402

[Close]

BLAST of CmoCh03G006910 vs. TAIR10
Match: AT5G46250.1 (AT5G46250.1 RNA-binding protein)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-09
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 381 PDPQLYAMIVSQIEYYFSGENLVKDTFL--RQKMDEDGWVPVRLIATFSKVKRLTENIQT 440
           P  +L   I+ Q+EYYFS ENL  D FL    K ++ G+VP+  IATF K+K+LT +   
Sbjct: 99  PIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHAL 158

Query: 441 ILDALQSSTLVEVKVSRHQLLN-NPFPLI 467
           I+ AL+ S+ + V     ++   +P P I
Sbjct: 159 IVSALKESSFLVVSADEKKVKRLSPLPEI 187

[Close]

BLAST of CmoCh03G006910 vs. NCBI nr
Match: gi|449434124|ref|XP_004134846.1| (PREDICTED: la-related protein 1C [Cucumis sativus])

HSP 1 Score: 696.8 bits (1797), Expect = 3.4e-197
Identity = 385/458 (84.06%), Postives = 411/458 (89.74%), Query Frame = 1


Query: 1   MAASTLPDADSVTASSADHSSRNSGQSNSSS----PKSSSRRSGGRTVSS-PWNQIVRGE 60
           MAAS LPDADSVTAS ADHS RNSGQ+N+SS    PKSSSRRSGGRTVSS PW +IVRGE
Sbjct: 1   MAASNLPDADSVTASIADHSPRNSGQNNNSSSGSSPKSSSRRSGGRTVSSSPWTRIVRGE 60

Query: 61  LDTATAVSSSVSSTTVVEPVTFTSSSSATSEEPVGECYDGGNGSSANAGKKPVWNKLANG 120
           +D A  VSSS S T VVEPV+F SSSS  SEEPVGE YDGGNGS+ANAGKKP WNKLANG
Sbjct: 61  IDVAAVVSSSASPTAVVEPVSFFSSSS--SEEPVGESYDGGNGSTANAGKKPAWNKLANG 120

Query: 121 TEAGPVMGAVSWPALSESAKGTPKSSSDSIKSLGDGSAGVQGTGTSSS-SSNKEGNNDVS 180
           TEAGPVMGAVSWPALSESAKGTPKSSSDS+KSLGDGSAG QGTGTSSS SSNKEGNNDVS
Sbjct: 121 TEAGPVMGAVSWPALSESAKGTPKSSSDSLKSLGDGSAGAQGTGTSSSASSNKEGNNDVS 180

Query: 181 PNPDSTLTHPITSRQKSLRRNGSNSSYNSALSQQSAPSSPVIDPAPNSSSRDQTQRTAFI 240
           PNPDSTLTHPITSRQKS+RRNGS++SYNS+L QQSAPSSPVID APN+S +DQTQRT F+
Sbjct: 181 PNPDSTLTHPITSRQKSMRRNGSSNSYNSSLPQQSAPSSPVIDTAPNNSPKDQTQRTTFV 240

Query: 241 SSQSHNDHGHQQPRSSFRSRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWNSNRNFNAQPH 300
           SSQSH+DHGHQQPR+S+RSRGGGSHPRGDNSHHHNY SRRDHDRGNQDWNSNRN+NAQPH
Sbjct: 241 SSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSHHHNYGSRRDHDRGNQDWNSNRNYNAQPH 300

Query: 301 RVVHRFIRPPPPPPPNTTGFISSPTMRPIGGPLPFPGRLYFFLRFLDFVPPVVYIGPPPP 360
           RVVHRFIRP PPPPPNTTG+ISSPTMR IGGPLPFP          DF PPVVYIGPPPP
Sbjct: 301 RVVHRFIRPSPPPPPNTTGYISSPTMRAIGGPLPFP----------DFAPPVVYIGPPPP 360

Query: 361 PPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEYYFSGENLVKDTFLRQKMDE 420
                EALRGVPFVAPI PNAMFFHGPDPQLYAMIVSQIEYYFSGENL+KDTFLRQ M+E
Sbjct: 361 -----EALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGENLIKDTFLRQNMNE 420

Query: 421 DGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVK 453
           +GWVPV+LIA+FSKV+RLTENIQTILDALQSST+VEVK
Sbjct: 421 EGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVK 441

[Close]

BLAST of CmoCh03G006910 vs. NCBI nr
Match: gi|659080562|ref|XP_008440860.1| (PREDICTED: la-related protein 1C [Cucumis melo])

HSP 1 Score: 690.6 bits (1781), Expect = 2.4e-195
Identity = 382/458 (83.41%), Postives = 406/458 (88.65%), Query Frame = 1


Query: 1   MAASTLPDADSVTASSADHSSRNSGQSNSSS----PKSSSRRSGGRTVSS-PWNQIVRGE 60
           MAAS LPDADSVTAS ADHS RNSGQ+N+SS    PKSSSRRSGGRTVSS PW +IVRGE
Sbjct: 1   MAASNLPDADSVTASIADHSPRNSGQNNNSSSGSSPKSSSRRSGGRTVSSSPWTRIVRGE 60

Query: 61  LDTATAVSSSVSSTTVVEPVTFTSSSSATSEEPVGECYDGGNGSSANAGKKPVWNKLANG 120
           +D A  VSSS S T VVEPV+F SSS    EEPVGE YDGGNGS+ANAGKKP WNKLANG
Sbjct: 61  IDVAAVVSSSASPTAVVEPVSFFSSS----EEPVGESYDGGNGSTANAGKKPAWNKLANG 120

Query: 121 TEAGPVMGAVSWPALSESAKGTPKSSSDSIKSLGDGSAGVQGTGTSSSS-SNKEGNNDVS 180
           TEAGPVMGAVSWPALSESAK TPKSSSDS+KSLGDGS G QGTGTSSS+ SNKEGNNDVS
Sbjct: 121 TEAGPVMGAVSWPALSESAKATPKSSSDSLKSLGDGSTGAQGTGTSSSAPSNKEGNNDVS 180

Query: 181 PNPDSTLTHPITSRQKSLRRNGSNSSYNSALSQQSAPSSPVIDPAPNSSSRDQTQRTAFI 240
           PNPDSTL HPITSRQKS+RRNGS++SYNS L QQSAPSSPVID APN+SS+DQTQRT F+
Sbjct: 181 PNPDSTLAHPITSRQKSMRRNGSSNSYNSNLPQQSAPSSPVIDTAPNNSSKDQTQRTTFV 240

Query: 241 SSQSHNDHGHQQPRSSFRSRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWNSNRNFNAQPH 300
           SSQSHNDHGHQQPR+SFRSRGGGSHPRGDNSHHHNY SRRDHDRGNQDWNSNRN+NAQPH
Sbjct: 241 SSQSHNDHGHQQPRNSFRSRGGGSHPRGDNSHHHNYGSRRDHDRGNQDWNSNRNYNAQPH 300

Query: 301 RVVHRFIRPPPPPPPNTTGFISSPTMRPIGGPLPFPGRLYFFLRFLDFVPPVVYIGPPPP 360
           RVVHRFIRP PPPPPNTTG+ISSPTMR IGGPLPFP          DF PPVVYIGPPPP
Sbjct: 301 RVVHRFIRPSPPPPPNTTGYISSPTMRAIGGPLPFP----------DFAPPVVYIGPPPP 360

Query: 361 PPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEYYFSGENLVKDTFLRQKMDE 420
                EALRGVPFVAPI PNAMFFHGPDPQLYAMIVSQIEYYFSGENL+KDTFLRQ M+E
Sbjct: 361 -----EALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGENLIKDTFLRQNMNE 420

Query: 421 DGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVK 453
           +GWVPV+LIA+FSKV+RLTENIQTILDALQSST+VEVK
Sbjct: 421 EGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVK 439

[Close]

BLAST of CmoCh03G006910 vs. NCBI nr
Match: gi|700193740|gb|KGN48944.1| (hypothetical protein Csa_6G507180 [Cucumis sativus])

HSP 1 Score: 424.1 bits (1089), Expect = 4.2e-115
Identity = 217/261 (83.14%), Postives = 236/261 (90.42%), Query Frame = 1


Query: 192 LRRNGSNSSYNSALSQQSAPSSPVIDPAPNSSSRDQTQRTAFISSQSHNDHGHQQPRSSF 251
           +RRNGS++SYNS+L QQSAPSSPVID APN+S +DQTQRT F+SSQSH+DHGHQQPR+S+
Sbjct: 1   MRRNGSSNSYNSSLPQQSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSY 60

Query: 252 RSRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWNSNRNFNAQPHRVVHRFIRPPPPPPPNT 311
           RSRGGGSHPRGDNSHHHNY SRRDHDRGNQDWNSNRN+NAQPHRVVHRFIRP PPPPPNT
Sbjct: 61  RSRGGGSHPRGDNSHHHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNT 120

Query: 312 TGFISSPTMRPIGGPLPFPGRLYFFLRFLDFVPPVVYIGPPPPPPPPPEALRGVPFVAPI 371
           TG+ISSPTMR IGGPLPFP          DF PPVVYIGPPPP     EALRGVPFVAPI
Sbjct: 121 TGYISSPTMRAIGGPLPFP----------DFAPPVVYIGPPPP-----EALRGVPFVAPI 180

Query: 372 PPNAMFFHGPDPQLYAMIVSQIEYYFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKR 431
            PNAMFFHGPDPQLYAMIVSQIEYYFSGENL+KDTFLRQ M+E+GWVPV+LIA+FSKV+R
Sbjct: 181 SPNAMFFHGPDPQLYAMIVSQIEYYFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQR 240

Query: 432 LTENIQTILDALQSSTLVEVK 453
           LTENIQTILDALQSST+VEVK
Sbjct: 241 LTENIQTILDALQSSTVVEVK 246

[Close]

BLAST of CmoCh03G006910 vs. NCBI nr
Match: gi|659080564|ref|XP_008440861.1| (PREDICTED: la-related protein 1C-like [Cucumis melo])

HSP 1 Score: 377.5 bits (968), Expect = 4.6e-101
Identity = 269/481 (55.93%), Postives = 319/481 (66.32%), Query Frame = 1


Query: 1   MAASTLPDADSVTASSADHSSRNSGQSNSSSPKSSSRRSGGRTVSSPWNQIVRGELDTAT 60
           MAA+ L D +   A+   HS R+SGQ N SSPKS   R   R VSSPW QIVRGEL+   
Sbjct: 1   MAATNLSDNNPAMATGVHHS-RHSGQ-NISSPKS---RRSPRPVSSPWTQIVRGELEIPA 60

Query: 61  AVSSSVSSTT----VVEP----VTFTSSSSATSEEPVG-ECYDGGNGSSANAGKKPVWNK 120
            V SS S+ T    +VEP     + + SSS T EEP G E  D GN S +NAG KP WNK
Sbjct: 61  VVPSSPSNVTSSAAIVEPRSPSPSSSPSSSLTVEEPAGAERSDSGNESLSNAGNKPAWNK 120

Query: 121 LANGT-EAGPVMGAVSWPALSESAKGTPKSSSDSIKSLGDGSAG--VQGTGTSSSSSNKE 180
           L+NG  E GPVMGAVSWPALSES + T KSSSDS K   DGSAG   +GTG   SS  K+
Sbjct: 121 LSNGAVEVGPVMGAVSWPALSESTRFTNKSSSDSPKDSADGSAGPACEGTGNPPSSPYKK 180

Query: 181 GNN-------------DVSPNPDSTLTHPITSRQKSLRRNGSNSSYNSALSQQSAPSSPV 240
           G +              ++P P +T T   T RQKS++R+G+ SSY+  +SQQSA S   
Sbjct: 181 GISASPSPNPTPAATPTLTPTPAATPTLTPTHRQKSMKRSGAASSYSGGVSQQSATSVST 240

Query: 241 IDPAP-NSSSRDQTQRTAFISSQSHNDHG--HQQPRSSFRSRGGGSHPRGDNSHHHNYSS 300
           ID  P N SS+D  QR +F +SQSHNDH   HQ   +SFRSRG G +PRGD+SHHHN+ S
Sbjct: 241 IDTTPSNPSSKDHMQRNSF-ASQSHNDHNYQHQHQPNSFRSRGSG-YPRGDSSHHHNHGS 300

Query: 301 RRDHDRGNQDWNSNRNFNAQPHRVVHRFIRPPPPPPPNTTGFISSPTMRPIGGPLPFPGR 360
           RRD DRGN DWN +RN+  QP RVV R+IRPPPPP   T  FI S +MRP+GGP+PF   
Sbjct: 301 RRDQDRGNHDWNPHRNYG-QPQRVVQRYIRPPPPPSNAT--FIPS-SMRPLGGPIPFH-- 360

Query: 361 LYFFLRFLDFVPPVVYIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQ 420
                   +FVPPVVY+  PP      EALR VPFVAP+PPNA+FF   DPQLYA IV Q
Sbjct: 361 --------EFVPPVVYVAAPPQ-----EALRSVPFVAPMPPNAVFFPASDPQLYARIVHQ 420

Query: 421 IEYYFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQS-STLVEV 453
           IEYYFS ENLVKDT+LR+ MDEDGWVP+ L+A F  V+ LT+NI  ILDAL+S ST+VEV
Sbjct: 421 IEYYFSDENLVKDTYLRRNMDEDGWVPIHLVAGFKMVRSLTDNIPVILDALRSTSTVVEV 455

[Close]

BLAST of CmoCh03G006910 vs. NCBI nr
Match: gi|641852449|gb|KDO71314.1| (hypothetical protein CISIN_1g039779mg, partial [Citrus sinensis])

HSP 1 Score: 330.1 bits (845), Expect = 8.3e-87
Identity = 231/484 (47.73%), Postives = 302/484 (62.40%), Query Frame = 1


Query: 54  GELDTATAVSSSVSSTTVVEPVTFTSSSSATSEEPVGECYDGGNGSSANAGKKPVWNKL- 113
           G    A   SSS  ST+V+E     ++++A  E+   EC +G  GS     K+P WN+  
Sbjct: 2   GREPIALVSSSSSQSTSVIELAA--AAAAAADEDNGAECGNGNAGS-----KRPPWNRQP 61

Query: 114 ANGT-EAGPVMGAVSWPALSESAKGTP---KSSSDSIKSLGDGSAG---VQGTGTSSSSS 173
           +NG  E  PVMGA SWPALSE+ +G+    KSSSDS+K   DGS+    +QGT  ++SSS
Sbjct: 62  SNGAAEMEPVMGAHSWPALSETTRGSSSSTKSSSDSLKGSVDGSSSSSVLQGTAATNSSS 121

Query: 174 NKEGNNDVSPNPDSTLTHPITSRQKSLRRNGSNSSYNSALSQQSAPSSPVIDPAPNSSS- 233
           +K+ +N+ +PN  ST  H  ++RQ+S++RN S+SS N  L Q  A    V++   N+ S 
Sbjct: 122 HKQVSNNANPN--STTNHAASNRQRSMKRNNSHSSSNGGLPQPPASQGSVVEGRSNNPSP 181

Query: 234 RDQTQRTAFISSQSHNDHGHQQPRSSFRSRGGGSHPRGDNSHHHNYSSRRDHDRGNQDWN 293
           RD TQ++ F  SQ H  + H  PR SF+ R G  HPRGD SHHHNY  RRD DRGNQDWN
Sbjct: 182 RDHTQKSGF-GSQFHGGNDHPHPRGSFKHRNGNQHPRGDGSHHHNYGGRRDQDRGNQDWN 241

Query: 294 SNRNFNA-----QPHRVVHRFIR----PPPPPPPNTTGFISSPTMRPIGGPLPFPGRLYF 353
           S+RN++      QP RVV RF R    PPPPPPP+++ FI  P +RP G P+ FP     
Sbjct: 242 SHRNYSGRDAHMQPQRVVQRFTRHPPPPPPPPPPSSSPFIPPPPVRPFGSPIGFP----- 301

Query: 354 FLRFLDFVPPVVYIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEY 413
                +F  PV Y+   PP     EALRGVPFVAPIPP+A+FF  PDPQL++ IV+QI+Y
Sbjct: 302 -----EFASPVYYVAAAPP-----EALRGVPFVAPIPPHAVFFPAPDPQLHSRIVTQIDY 361

Query: 414 YFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVKVSR 473
           YFS ENLVKDTFLRQ MD+ GWVP+RLIA F+KV  LT+NIQ ILDAL+SST+VEV+  R
Sbjct: 362 YFSNENLVKDTFLRQNMDDQGWVPIRLIAGFNKVSLLTDNIQLILDALRSSTVVEVQGDR 421

Query: 474 HQLLNNPFPLIVTGDFNGSWSTIFSYLSWEKNTEISLASLKCNSYSRNRNRRKIYNHVSL 520
            +  N+    I+     G +S++ S  S  K + I + S +  S S +   +K  NH   
Sbjct: 422 IRKRNDWMRWIMP---PGKFSSLPSPQSQGK-SGIDMLSAQVQSISLD---QKTLNHSRS 453

The following BLAST results are available for this feature:

BLAST of CmoCh03G006910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRP1C_ARATH	1.3e-44	37.95	La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1	[more]
LRP1B_ARATH	2.8e-26	35.27	La-related protein 1B OS=Arabidopsis thaliana GN=LARP1B PE=1 SV=2	[more]
LAR1B_HUMAN	1.1e-11	44.79	La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2	[more]
LARP1_HUMAN	7.4e-11	49.40	La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2	[more]
LARP1_MOUSE	1.7e-10	51.39	La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=3	[more]

BLAST of CmoCh03G006910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJG2_CUCSA	3.0e-115	83.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507180 PE=4 SV=1	[more]
A0A067FV98_CITSI	5.8e-87	47.73	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039779mg PE=4 S...	[more]
V4SDL2_9ROSI	1.3e-86	49.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025634mg PE=4 SV=1	[more]
A0A061DF68_THECC	8.7e-83	48.92	Winged-helix DNA-binding transcription factor family protein, putative OS=Theobr...	[more]
E0CU57_VITVI	3.2e-77	47.81	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0349g00060 PE=4 SV=...	[more]

BLAST of CmoCh03G006910 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35890.1	7.6e-46	37.95	winged-helix DNA-binding transcription factor family protein	[more]
AT5G66100.1	1.6e-27	35.27	winged-helix DNA-binding transcription factor family protein	[more]
AT5G46250.1	4.3e-09	39.33	RNA-binding protein	[more]

BLAST of CmoCh03G006910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434124\|ref\|XP_004134846.1\|	3.4e-197	84.06	PREDICTED: la-related protein 1C [Cucumis sativus]	[more]
gi\|659080562\|ref\|XP_008440860.1\|	2.4e-195	83.41	PREDICTED: la-related protein 1C [Cucumis melo]	[more]
gi\|700193740\|gb\|KGN48944.1\|	4.2e-115	83.14	hypothetical protein Csa_6G507180 [Cucumis sativus]	[more]
gi\|659080564\|ref\|XP_008440861.1\|	4.6e-101	55.93	PREDICTED: la-related protein 1C-like [Cucumis melo]	[more]
gi\|641852449\|gb\|KDO71314.1\|	8.3e-87	47.73	hypothetical protein CISIN_1g039779mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006630	La_HTH
IPR011991	Winged helix-turn-helix DNA-binding domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G006910.1	CmoCh03G006910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	RNA-binding protein Lupus La	PFAM	PF05383	La	coord: 389..444 score: 9.0
IPR006630	RNA-binding protein Lupus La	SMART	SM00715	la	coord: 383..461 score: 1.7
IPR006630	RNA-binding protein Lupus La	PROFILE	PS50961	HTH_LA	coord: 379..468 score: 23
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 382..455 score: 1.5
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 377..455 score: 2.0
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 99..451 score: 4.4E-120coord: 42..74 score: 4.4E
None	No IPR available	PANTHER	PTHR22792:SF59	LA-RELATED PROTEIN 1B-RELATED	coord: 99..451 score: 4.4E-120coord: 42..74 score: 4.4E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G006910	Watermelon (97103) v1	cmowmB608
CmoCh03G006910	Watermelon (97103) v1	cmowmB610
CmoCh03G006910	Watermelon (97103) v1	cmowmB623
CmoCh03G006910	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G006910	Cucurbita pepo (Zucchini)	cmocpeB608
CmoCh03G006910	Cucurbita pepo (Zucchini)	cmocpeB611
CmoCh03G006910	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G006910	Bottle gourd (USVL1VR-Ls)	cmolsiB580
CmoCh03G006910	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G006910	Bottle gourd (USVL1VR-Ls)	cmolsiB605
CmoCh03G006910	Bottle gourd (USVL1VR-Ls)	cmolsiB608
CmoCh03G006910	Cucumber (Gy14) v2	cgybcmoB380
CmoCh03G006910	Cucumber (Gy14) v2	cgybcmoB385
CmoCh03G006910	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G006910	Melon (DHL92) v3.6.1	cmomedB682
CmoCh03G006910	Melon (DHL92) v3.6.1	cmomedB662
CmoCh03G006910	Melon (DHL92) v3.6.1	cmomedB694
CmoCh03G006910	Silver-seed gourd	carcmoB0477
CmoCh03G006910	Silver-seed gourd	carcmoB0551
CmoCh03G006910	Silver-seed gourd	carcmoB0886
CmoCh03G006910	Silver-seed gourd	carcmoB1317
CmoCh03G006910	Cucumber (Chinese Long) v3	cmocucB0767
CmoCh03G006910	Cucumber (Chinese Long) v3	cmocucB0769
CmoCh03G006910	Cucumber (Chinese Long) v3	cmocucB0773
CmoCh03G006910	Cucumber (Chinese Long) v3	cmocucB0793
CmoCh03G006910	Watermelon (97103) v2	cmowmbB645
CmoCh03G006910	Watermelon (97103) v2	cmowmbB642
CmoCh03G006910	Watermelon (97103) v2	cmowmbB673
CmoCh03G006910	Wax gourd	cmowgoB0767
CmoCh03G006910	Wax gourd	cmowgoB0781
CmoCh03G006910	Cucurbita moschata (Rifu)	cmocmoB417
CmoCh03G006910	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh03G006910	Cucumber (Gy14) v1	cgycmoB0042
CmoCh03G006910	Cucumber (Gy14) v1	cgycmoB0892
CmoCh03G006910	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G006910	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G006910	Wild cucumber (PI 183967)	cmocpiB656
CmoCh03G006910	Wild cucumber (PI 183967)	cmocpiB658
CmoCh03G006910	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G006910	Cucumber (Chinese Long) v2	cmocuB644
CmoCh03G006910	Cucumber (Chinese Long) v2	cmocuB646
CmoCh03G006910	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G006910	Melon (DHL92) v3.5.1	cmomeB578
CmoCh03G006910	Melon (DHL92) v3.5.1	cmomeB595
CmoCh03G006910	Melon (DHL92) v3.5.1	cmomeB605
CmoCh03G006910	Watermelon (Charleston Gray)	cmowcgB569
CmoCh03G006910	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G006910	Watermelon (Charleston Gray)	cmowcgB601