CmoCh03G006010 (gene) Cucurbita moschata (Rifu)

NameCmoCh03G006010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr03 : 5706499 .. 5707418 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGAGGTGGCAAAATTAGTAAGGATTATTTGGAGTCCTCATGGCTATTTTCCTCTTTTCCCCAACCTCATTATATTTTATTGTAATTCACCATTTTTCATACACCTATATAAACCCTCTCTCTCTGCTGCTTCTTTCCATCAACTCGCTCTCTCTCAGTATTTTAGTTTCTTCTAAGCTTAATTCTCTTCTTCGCTTCCATATTGCTTCTTCTTCCCTTTCCCAAATGGCCACCATTGAGGTAATTTCAAGCTTTTATAGCTTTCTCTCATGGCTTTAAGATCTTTTTTCTTGTTTTTCTTTTGGTATTCTAACAATGGCTGTATGAGTGTGATCATGTTGTTACTGATTTAATGATCTGTGGGTATTGGATCACATTCTCATATGAATATGATCATTGAAGGCTGTTTGAACATATTGTGTTTGAATGGCAATCCATAATGAATTGTGCGATCTGGGTGTGGCAGGTTGAATCAGCCCCCGTTGTATTGGCAGAGCCTGAGGCAGCTCCAGTGGTCCAAGCTGAGGAGAAAGTTGCAGAGGAGGCAGTGAGTGAAGCAGCCCCTGCAGAAGAGGCAAAGGAGGAGGAAGCTGCCTCTGAAGCTGTTGAGACAGAGGAACCAGCACCGGTCGCAGCCGAACCCGAGGTCGAAACCAAGGAAGTTGTGGTAGAGGAGGCAGTGGAGGCAGAGCCTGCAGCTGCTGCTGCTTCCGAGCCCGAAGCAGCGGCCGAGGCGGAAGAGAAGAAGGAAGAGACCAAAGAGGAAACAGAAGAGCCAGTGGTAGAGAAAAAAGAAGAAGAAGAAGAACCTCAGGAAGTGAAGGCTGAAGAGACTGTTGAAGAGAGCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCTGAGGAAGAGAAGCCAAAGGAAGAGGAATAA

mRNA sequence

AATGAGGTGGCAAAATTAGTAAGGATTATTTGGAGTCCTCATGGCTATTTTCCTCTTTTCCCCAACCTCATTATATTTTATTGTAATTCACCATTTTTCATACACCTATATAAACCCTCTCTCTCTGCTGCTTCTTTCCATCAACTCGCTCTCTCTCAGTATTTTAGTTTCTTCTAAGCTTAATTCTCTTCTTCGCTTCCATATTGCTTCTTCTTCCCTTTCCCAAATGGCCACCATTGAGGTTGAATCAGCCCCCGTTGTATTGGCAGAGCCTGAGGCAGCTCCAGTGGTCCAAGCTGAGGAGAAAGTTGCAGAGGAGGCAGTGAGTGAAGCAGCCCCTGCAGAAGAGGCAAAGGAGGAGGAAGCTGCCTCTGAAGCTGTTGAGACAGAGGAACCAGCACCGGTCGCAGCCGAACCCGAGGTCGAAACCAAGGAAGTTGTGGTAGAGGAGGCAGTGGAGGCAGAGCCTGCAGCTGCTGCTGCTTCCGAGCCCGAAGCAGCGGCCGAGGCGGAAGAGAAGAAGGAAGAGACCAAAGAGGAAACAGAAGAGCCAGTGGTAGAGAAAAAAGAAGAAGAAGAAGAACCTCAGGAAGTGAAGGCTGAAGAGACTGTTGAAGAGAGCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCTGAGGAAGAGAAGCCAAAGGAAGAGGAATAA

Coding sequence (CDS)

ATGGCTATTTTCCTCTTTTCCCCAACCTCATTATATTTTATTGTAATTCACCATTTTTCATACACCTATATAAACCCTCTCTCTCTGCTGCTTCTTTCCATCAACTCGCTCTCTCTCAGTATTTTAGTTTCTTCTAAGCTTAATTCTCTTCTTCGCTTCCATATTGCTTCTTCTTCCCTTTCCCAAATGGCCACCATTGAGGTTGAATCAGCCCCCGTTGTATTGGCAGAGCCTGAGGCAGCTCCAGTGGTCCAAGCTGAGGAGAAAGTTGCAGAGGAGGCAGTGAGTGAAGCAGCCCCTGCAGAAGAGGCAAAGGAGGAGGAAGCTGCCTCTGAAGCTGTTGAGACAGAGGAACCAGCACCGGTCGCAGCCGAACCCGAGGTCGAAACCAAGGAAGTTGTGGTAGAGGAGGCAGTGGAGGCAGAGCCTGCAGCTGCTGCTGCTTCCGAGCCCGAAGCAGCGGCCGAGGCGGAAGAGAAGAAGGAAGAGACCAAAGAGGAAACAGAAGAGCCAGTGGTAGAGAAAAAAGAAGAAGAAGAAGAACCTCAGGAAGTGAAGGCTGAAGAGACTGTTGAAGAGAGCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCTGAGGAAGAGAAGCCAAAGGAAGAGGAATAA
BLAST of CmoCh03G006010 vs. TrEMBL
Match: A0A0A0KMX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511710 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-20
Identity = 101/157 (64.33%), Postives = 111/157 (70.70%), Query Frame = 1

Query: 63  MATIEVESAPVVLAEPEAAPVVQAEEKVAEEAVSEAAPAEEAKEEEAASEAVETEEPAPV 122
           MAT+EVES PVVL EPEAAP VQ EEKV EE V+E  PA+E +EE AA  A E  E APV
Sbjct: 1   MATVEVESVPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQEEEAAAPAAPEPVEEAPV 60

Query: 123 AAEPEVETKEVVVEEAVEAEPAAAAASEPE--AAAEAEEKKEETKEETEEPVVEKKEEEE 182
           A EPEVETKE VVEE       A  A+EPE  A AEAE+K+EETKEET E V EK   EE
Sbjct: 61  ATEPEVETKEEVVEEKESKPEEAEPAAEPEAPAEAEAEKKEEETKEETVEAVEEK--TEE 120

Query: 183 EPQEVKAEETVEESSEAAAAAAAAAAPAEEEKPKEEE 218
           E +EVK+E+ VEESSE       AAAPAEEEKPK EE
Sbjct: 121 ETKEVKSEDAVEESSE-------AAAPAEEEKPKAEE 148

BLAST of CmoCh03G006010 vs. NCBI nr
Match: gi|449434024|ref|XP_004134796.1| (PREDICTED: fibrous sheath CABYR-binding protein-like [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 6.8e-20
Identity = 101/157 (64.33%), Postives = 111/157 (70.70%), Query Frame = 1

Query: 63  MATIEVESAPVVLAEPEAAPVVQAEEKVAEEAVSEAAPAEEAKEEEAASEAVETEEPAPV 122
           MAT+EVES PVVL EPEAAP VQ EEKV EE V+E  PA+E +EE AA  A E  E APV
Sbjct: 1   MATVEVESVPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQEEEAAAPAAPEPVEEAPV 60

Query: 123 AAEPEVETKEVVVEEAVEAEPAAAAASEPE--AAAEAEEKKEETKEETEEPVVEKKEEEE 182
           A EPEVETKE VVEE       A  A+EPE  A AEAE+K+EETKEET E V EK   EE
Sbjct: 61  ATEPEVETKEEVVEEKESKPEEAEPAAEPEAPAEAEAEKKEEETKEETVEAVEEK--TEE 120

Query: 183 EPQEVKAEETVEESSEAAAAAAAAAAPAEEEKPKEEE 218
           E +EVK+E+ VEESSE       AAAPAEEEKPK EE
Sbjct: 121 ETKEVKSEDAVEESSE-------AAAPAEEEKPKAEE 148

BLAST of CmoCh03G006010 vs. NCBI nr
Match: gi|659079095|ref|XP_008440071.1| (PREDICTED: neurofilament heavy polypeptide-like [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 2.6e-19
Identity = 99/155 (63.87%), Postives = 108/155 (69.68%), Query Frame = 1

Query: 63  MATIEVESAPVVLAEPEAAPVVQAEEKVAEEAVSEAAPAEEAKEEEAASEAVETEEPAPV 122
           MATIEVESAPVVL EPEAAP VQ EEKV EE V+E  PA+E KEE A     E E+PAPV
Sbjct: 1   MATIEVESAPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQKEEAAPEPVEEVEKPAPV 60

Query: 123 AAEPEVETKEVVVEEAVEAEPAAAAASEPEAAAEAEEKKEETKEETEEPVVEKKEEEEEP 182
             EP VETKE VVEE       A  A+EPEA AEAE   EE +EET+E  VE+K  EEE 
Sbjct: 61  ETEPVVETKEEVVEEKESKPEEAEPAAEPEAPAEAE--AEEKEEETKEEAVEEK-AEEEA 120

Query: 183 QEVKAEETVEESSEAAAAAAAAAAPAEEEKPKEEE 218
           +EVK+EE VEESSE       AAAPAEEEKPK EE
Sbjct: 121 KEVKSEEVVEESSE-------AAAPAEEEKPKAEE 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KMX7_CUCSA4.8e-2064.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449434024|ref|XP_004134796.1|6.8e-2064.33PREDICTED: fibrous sheath CABYR-binding protein-like [Cucumis sativus][more]
gi|659079095|ref|XP_008440071.1|2.6e-1963.87PREDICTED: neurofilament heavy polypeptide-like [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G006010.1CmoCh03G006010.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None