CmoCh03G005980 (gene) Cucurbita moschata (Rifu)

NameCmoCh03G005980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRho GDP-dissociation inhibitor, putative
LocationCmo_Chr03 : 5698172 .. 5698660 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGGAACTTTCAGTCCTCAGGAAGAACCTTACACACACGAAATCCCAGAAGATACAACCCCATCTGGCATTTTTGCTCGAGGATCATATTCGGCCAAAACCAAGGTAATTCAACTTGGTGTTTTAGTCTCAAGAAATGGCCGTTTTAGTCCTTAAATGGATGAGAAGTTTGTTTGTTTGTTTGTGTGGGCTTGCTTGCAGTTTGTTGATGATGACAACAAGTGCTACCTGGAAATCAAGTACACATTTGATATCAAGAAAGATTGGCAATCATCTTAAAAGCAACAGGATTGATTCTCTCTCTTAATGATTGGTTTTGCAGCATTTGATCAATGTCTCTTTTGAACCGCATAAATTTGGTTTCAGTGTCCAAATATTTCATGTACTCTGTTTCTTTTGTCTCTTCATTCTTTCATGTACGTGCAATGAGACTGATGGCCTCAACCCTTTTCTCTTCTCTTTTTCTCAAAGGCAATTAAGAACGGA

mRNA sequence

ATGCTGGGAACTTTCAGTCCTCAGGAAGAACCTTACACACACGAAATCCCAGAAGATACAACCCCATCTGGCATTTTTGCTCGAGGATCATATTCGGCCAAAACCAAGTTTGTTGATGATGACAACAAGTGCTACCTGGAAATCAAGTACACATTTGATATCAAGAAAGATTGGCAATCATCTTAAAAGCAACAGGATTGATTCTCTCTCTTAATGATTGGTTTTGCAGCATTTGATCAATGTCTCTTTTGAACCGCATAAATTTGGTTTCAGTGTCCAAATATTTCATGTACTCTGTTTCTTTTGTCTCTTCATTCTTTCATGTACGTGCAATGAGACTGATGGCCTCAACCCTTTTCTCTTCTCTTTTTCTCAAAGGCAATTAAGAACGGA

Coding sequence (CDS)

ATGCTGGGAACTTTCAGTCCTCAGGAAGAACCTTACACACACGAAATCCCAGAAGATACAACCCCATCTGGCATTTTTGCTCGAGGATCATATTCGGCCAAAACCAAGTTTGTTGATGATGACAACAAGTGCTACCTGGAAATCAAGTACACATTTGATATCAAGAAAGATTGGCAATCATCTTAA
BLAST of CmoCh03G005980 vs. Swiss-Prot
Match: GDIR_ARATH (Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.1e-23
Identity = 46/58 (79.31%), Postives = 54/58 (93.10%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDW 59
           MLGTFSPQ EPY H +PE+TTPSG+FARGSYSA+TKF+DDDNKCYLEI Y+FDI+K+W
Sbjct: 180 MLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 237

BLAST of CmoCh03G005980 vs. Swiss-Prot
Match: GDIR1_DICDI (Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium discoideum GN=rdiA PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.8e-10
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPE---DTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKD 60
           MLG+F+PQ   ++   P    +  PSG+ ARGSY+AK  F DDDN+ +L ++Y F IK D
Sbjct: 133 MLGSFAPQALAHSVTNPRHGWEEAPSGMLARGSYTAKVVFTDDDNEEHLSVEYAFSIKSD 192

BLAST of CmoCh03G005980 vs. Swiss-Prot
Match: GDIR_SCHPO (Rho GDP-dissociation inhibitor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F12.06 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-08
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQ 60
           M+G++ P E PY      D  P+G+ ARG Y A  KFVDDD   + E  + FD+ K W+
Sbjct: 147 MIGSYGPSETPYDFTSEPDEAPTGMLARGHYEANGKFVDDDKVVHHEFVWAFDVAKSWK 205

BLAST of CmoCh03G005980 vs. Swiss-Prot
Match: GDIR1_HUMAN (Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-08
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQ 60
           M+G++ P+ E Y    P +  P G+ ARGSYS K++F DDD   +L  ++   IKKDW+
Sbjct: 145 MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWK 203

BLAST of CmoCh03G005980 vs. Swiss-Prot
Match: GDIR1_MACFA (Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-08
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQ 60
           M+G++ P+ E Y    P +  P G+ ARGSYS K++F DDD   +L  ++   IKKDW+
Sbjct: 145 MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWK 203

BLAST of CmoCh03G005980 vs. TrEMBL
Match: M5WUV0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010564mg PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.9e-25
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQS 60
           MLGTFSPQ EPYTH +PEDTTPSGIFARGSYSA++KFVDDDNKCYLEI YTFDI+KDWQS
Sbjct: 185 MLGTFSPQSEPYTHVLPEDTTPSGIFARGSYSARSKFVDDDNKCYLEINYTFDIRKDWQS 244

BLAST of CmoCh03G005980 vs. TrEMBL
Match: A0A059CF26_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01410 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-24
Identity = 51/61 (83.61%), Postives = 59/61 (96.72%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQS 60
           M+GTFSPQ+EPYTHE+PE+TTPSGIFARGSYSA++KFVDDDNKCYLEI YTFDI+KDW S
Sbjct: 186 MIGTFSPQQEPYTHEMPEETTPSGIFARGSYSARSKFVDDDNKCYLEINYTFDIRKDWSS 245

Query: 61  S 62
           +
Sbjct: 246 T 246

BLAST of CmoCh03G005980 vs. TrEMBL
Match: B9S3J1_RICCO (Rho GDP-dissociation inhibitor, putative OS=Ricinus communis GN=RCOM_0669590 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-24
Identity = 52/61 (85.25%), Postives = 59/61 (96.72%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQS 60
           MLGTFSPQ EPYTHE+PE+TTPSGIFARGSYSA++KFVDDDNKCYLEI YTFDI+K+WQS
Sbjct: 183 MLGTFSPQAEPYTHEMPEETTPSGIFARGSYSARSKFVDDDNKCYLEINYTFDIRKEWQS 242

Query: 61  S 62
           +
Sbjct: 243 T 243

BLAST of CmoCh03G005980 vs. TrEMBL
Match: A5BFT0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019936 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.4e-24
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQS 60
           MLGTFSPQ+E YTHE+PE+TTPSGIFARG+YSAKTKF+DDDNKCYLEI Y+FDI+KDWQS
Sbjct: 132 MLGTFSPQQETYTHEMPEETTPSGIFARGTYSAKTKFLDDDNKCYLEINYSFDIRKDWQS 191

BLAST of CmoCh03G005980 vs. TrEMBL
Match: W9QMA2_9ROSA (Rho GDP-dissociation inhibitor 1 OS=Morus notabilis GN=L484_013647 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.4e-24
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQS 60
           MLGTFSPQ EPYT+E+PEDTTPSGIFARGSYSA++KF+DDD KCYLEI YTFDI+KDWQS
Sbjct: 181 MLGTFSPQSEPYTYEMPEDTTPSGIFARGSYSARSKFIDDDKKCYLEINYTFDIRKDWQS 240

BLAST of CmoCh03G005980 vs. TAIR10
Match: AT3G07880.1 (AT3G07880.1 Immunoglobulin E-set superfamily protein)

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-24
Identity = 46/58 (79.31%), Postives = 54/58 (93.10%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDW 59
           MLGTFSPQ EPY H +PE+TTPSG+FARGSYSA+TKF+DDDNKCYLEI Y+FDI+K+W
Sbjct: 180 MLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 237

BLAST of CmoCh03G005980 vs. TAIR10
Match: AT1G62450.1 (AT1G62450.1 Immunoglobulin E-set superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 6.8e-24
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQ 60
           MLGTFSPQ E Y H +PE+ TPSG+FARGSYSA+TKF+DDDNKCYLEI YTFDI+K WQ
Sbjct: 165 MLGTFSPQAESYQHVMPEEMTPSGMFARGSYSARTKFIDDDNKCYLEINYTFDIRKSWQ 223

BLAST of CmoCh03G005980 vs. TAIR10
Match: AT1G12070.1 (AT1G12070.1 Immunoglobulin E-set superfamily protein)

HSP 1 Score: 97.1 bits (240), Expect = 4.1e-21
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDW 59
           MLGTFSPQ EPYTH + E+T PSG+  RGSYS K+KFVDDDN+CYLE  YTFDI+K+W
Sbjct: 165 MLGTFSPQAEPYTHVMFEETAPSGLLVRGSYSVKSKFVDDDNQCYLENNYTFDIRKNW 222

BLAST of CmoCh03G005980 vs. NCBI nr
Match: gi|778720199|ref|XP_011658125.1| (PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 6.8e-26
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQS 60
           MLGTFSPQEEPYTHE+PEDTTPSGIFARGSYSA+TKFVDDD+KCYLE  YTFDI+KDWQS
Sbjct: 173 MLGTFSPQEEPYTHEMPEDTTPSGIFARGSYSARTKFVDDDDKCYLEFNYTFDIRKDWQS 232

Query: 61  S 62
           S
Sbjct: 233 S 233

BLAST of CmoCh03G005980 vs. NCBI nr
Match: gi|778720191|ref|XP_011658122.1| (PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 6.8e-26
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQS 60
           MLGTFSPQEEPYTHE+PEDTTPSGIFARGSYSA+TKFVDDD+KCYLE  YTFDI+KDWQS
Sbjct: 174 MLGTFSPQEEPYTHEMPEDTTPSGIFARGSYSARTKFVDDDDKCYLEFNYTFDIRKDWQS 233

Query: 61  S 62
           S
Sbjct: 234 S 234

BLAST of CmoCh03G005980 vs. NCBI nr
Match: gi|659079087|ref|XP_008440067.1| (PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 4.4e-25
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQS 60
           MLGTFSPQEEPYTHE+PEDTTPSG+FARGSYSA+TKF+DDDNK YLEI YTFDI+KDWQS
Sbjct: 173 MLGTFSPQEEPYTHEMPEDTTPSGMFARGSYSARTKFLDDDNKSYLEINYTFDIRKDWQS 232

Query: 61  S 62
           S
Sbjct: 233 S 233

BLAST of CmoCh03G005980 vs. NCBI nr
Match: gi|659079083|ref|XP_008440065.1| (PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 4.4e-25
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQS 60
           MLGTFSPQEEPYTHE+PEDTTPSG+FARGSYSA+TKF+DDDNK YLEI YTFDI+KDWQS
Sbjct: 174 MLGTFSPQEEPYTHEMPEDTTPSGMFARGSYSARTKFLDDDNKSYLEINYTFDIRKDWQS 233

Query: 61  S 62
           S
Sbjct: 234 S 234

BLAST of CmoCh03G005980 vs. NCBI nr
Match: gi|694309068|ref|XP_009353488.1| (PREDICTED: rho GDP-dissociation inhibitor 1 [Pyrus x bretschneideri])

HSP 1 Score: 120.9 bits (302), Expect = 7.5e-25
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1

Query: 1   MLGTFSPQEEPYTHEIPEDTTPSGIFARGSYSAKTKFVDDDNKCYLEIKYTFDIKKDWQS 60
           MLGTFSPQ EPYTH +PEDTTPSGIFARGSYSA++KFVDDDNKCYLEI YTFDI+KDWQS
Sbjct: 185 MLGTFSPQSEPYTHVLPEDTTPSGIFARGSYSARSKFVDDDNKCYLEINYTFDIRKDWQS 244

Query: 61  S 62
           +
Sbjct: 245 A 245

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GDIR_ARATH4.1e-2379.31Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1[more]
GDIR1_DICDI6.8e-1047.62Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium discoideum GN=rdiA PE... [more]
GDIR_SCHPO1.3e-0842.37Rho GDP-dissociation inhibitor OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
GDIR1_HUMAN1.7e-0842.37Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3[more]
GDIR1_MACFA1.7e-0842.37Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1[more]
Match NameE-valueIdentityDescription
M5WUV0_PRUPE6.9e-2588.33Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010564mg PE=4 SV=1[more]
A0A059CF26_EUCGR1.2e-2483.61Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01410 PE=4 SV=1[more]
B9S3J1_RICCO1.2e-2485.25Rho GDP-dissociation inhibitor, putative OS=Ricinus communis GN=RCOM_0669590 PE=... [more]
A5BFT0_VITVI4.4e-2485.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019936 PE=4 SV=1[more]
W9QMA2_9ROSA4.4e-2485.00Rho GDP-dissociation inhibitor 1 OS=Morus notabilis GN=L484_013647 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G07880.12.3e-2479.31 Immunoglobulin E-set superfamily protein[more]
AT1G62450.16.8e-2477.97 Immunoglobulin E-set superfamily protein[more]
AT1G12070.14.1e-2172.41 Immunoglobulin E-set superfamily protein[more]
Match NameE-valueIdentityDescription
gi|778720199|ref|XP_011658125.1|6.8e-2690.16PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X2 [Cucumis sativus][more]
gi|778720191|ref|XP_011658122.1|6.8e-2690.16PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X1 [Cucumis sativus][more]
gi|659079087|ref|XP_008440067.1|4.4e-2588.52PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X2 [Cucumis melo][more]
gi|659079083|ref|XP_008440065.1|4.4e-2588.52PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X1 [Cucumis melo][more]
gi|694309068|ref|XP_009353488.1|7.5e-2586.89PREDICTED: rho GDP-dissociation inhibitor 1 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000406Rho_GDI
IPR014756Ig_E-set
IPR024792RhoGDI_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005094Rho GDP-dissociation inhibitor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0008150 biological_process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005094 Rho GDP-dissociation inhibitor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G005980.1CmoCh03G005980.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000406Rho protein GDP-dissociation inhibitorPANTHERPTHR10980RHO GDP-DISSOCIATION INHIBITORcoord: 1..61
score: 7.7
IPR000406Rho protein GDP-dissociation inhibitorPFAMPF02115Rho_GDIcoord: 1..57
score: 2.0
IPR014756Immunoglobulin E-setunknownSSF81296E set domainscoord: 1..59
score: 1.05
IPR024792Rho GDP-dissociation inhibitor domainGENE3DG3DSA:2.70.50.30coord: 1..59
score: 1.6
NoneNo IPR availablePANTHERPTHR10980:SF18IMMUNOGLOBULIN E-SET SUPERFAMILY PROTEINcoord: 1..61
score: 7.7