CmoCh03G005400 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G005400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransposon Ty1-PL Gag-Pol polyprotein
LocationCmo_Chr03 : 5456922 .. 5458469 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTATGACGAAGCAGCTGAAAAAGAAGAGTGGAAGAAAGCCATGGTAGAAGAGATGCAGTCCATTGAGAAAAATGGAACATGGGAGATGGTTGACTTACCAAACGGAAAAAATGCAATCAATTTGAAATGGGTGTTCAAGACAAAATTTGCACCAGATGGAAGCATACAAAAGCATAAGGCCCGTCTTGTAGCAAAAGGGTATGCACAACAACAAGGTATAGATTTTGAAGAAACTTTTTCTCCAGTAGCTCGTTTTGAAACTGTAAGAACTATTCTAGCATTAGCAGCAGAATTGCGGTGGCCAGTTTATCAGTTTGATGTTAAGTCAGCATTTCTTAACGGAGATTTACAAGAAGAGGTTTATGTAGCACAACCAGAAGGATTCATAAAGAAGGACAAAGAAACAAAGGTATACAAGTTGAGAAAGGCACTATACGGATTAAAGCAGGCCCCTCGAGCTTGGTACAGCAAGATTGATGGGTATTTTCAAAAGAAAGGATACATGAGAAGTGAGAATGAGCCTACTTTATATGTGAAGAAGGAAGGTAAAAGTGATTTCATCATTATTTGCCTCTATGTTGACGATATTATTTACACTAGCTCTTCTAACTCTCTTTTGGATAAATTTAAGTCTCAAATGATGAGTGAATTTGAGATGTCAGATATGGGTCTATTGCACTATTTTCTTGGTCTTGAAGTATATCAAGTTGAAGATGGAATTTTTATTTCACAAAGAAAATATGCCAAAGATATTATGAGTAAATTTGGTATGCTTAATTGTAAGCCTGCAGCTACACCTATGAATATTAATGAGAAATTACAACATGATGATGGAGCAGAAATGACAGATGCTAGAAGGTTCAGGAGCTTGGTTGGCGGACTGATTTACTTAACTCACACACGACCCGACATTGCATTTCCTGTTGGTATTATTTCTAAGTTTATGCAACATCCTTCAAAGGTTCATTATGGAGCAGCAAAAAGAGTCTTACGTTACATTGCCGGAACTATGGAGTATGGAATTTGGTATTCTAAATCCTCTAATTTCAAACTATATGGATTCACTGATAGTGATTGGGCAGGATCATTAGATGATAGACGAAGCATTTCAGCCAATGTTTTCACTTTAGGGTCAGGAGCGATCACTTGGAGCTCAAAGAAACAAGCAACAGTGGCGCTGTCAACATCAGAAGCAGAATATGTTGCAGCAACTTCAGCAGCGTGTCAAGCCATTTGGCTAAGAAGAATGTTAGCTGACCTTCAACAAGAGCAAAAAGGGACAACAAAGATATTTTGTGATAATAAAGCAACTATTTCTATGACAAAGAACCCAGCGTTTCACAGTAGAACAAAACATATTGAACTTCGACATCACTATATTCGTGATCTTGTTGCAGACGAAGAAATTGTCTTGGAATATTGTAACACCGATGAACAGCTAGCAGACATACTTACCAAGGCTTTGTCAAAAGAAAAGTTTTGCTACTTCAGACGATTACTTGGCATTTGCAACTTTGAATCAAGGGGGAGTGTTGAGATATGA

mRNA sequence

ATGTGTTATGACGAAGCAGCTGAAAAAGAAGAGTGGAAGAAAGCCATGGTAGAAGAGATGCAGTCCATTGAGAAAAATGGAACATGGGAGATGGTTGACTTACCAAACGGAAAAAATGCAATCAATTTGAAATGGGTGTTCAAGACAAAATTTGCACCAGATGGAAGCATACAAAAGCATAAGGCCCGTCTTGTAGCAAAAGGGTATGCACAACAACAAGGTATAGATTTTGAAGAAACTTTTTCTCCAGTAGCTCGTTTTGAAACTGTAAGAACTATTCTAGCATTAGCAGCAGAATTGCGGTGGCCAGTTTATCAGTTTGATGTTAAGTCAGCATTTCTTAACGGAGATTTACAAGAAGAGGTTTATGTAGCACAACCAGAAGGATTCATAAAGAAGGACAAAGAAACAAAGGTATACAAGTTGAGAAAGGCACTATACGGATTAAAGCAGGCCCCTCGAGCTTGGTACAGCAAGATTGATGGGTATTTTCAAAAGAAAGGATACATGAGAAGTGAGAATGAGCCTACTTTATATGTGAAGAAGGAAGGTAAAAGTGATTTCATCATTATTTGCCTCTATGTTGACGATATTATTTACACTAGCTCTTCTAACTCTCTTTTGGATAAATTTAAGTCTCAAATGATGAGTGAATTTGAGATGTCAGATATGGGTCTATTGCACTATTTTCTTGGTCTTGAAGTATATCAAGTTGAAGATGGAATTTTTATTTCACAAAGAAAATATGCCAAAGATATTATGAGTAAATTTGGTATGCTTAATTGTAAGCCTGCAGCTACACCTATGAATATTAATGAGAAATTACAACATGATGATGGAGCAGAAATGACAGATGCTAGAAGGTTCAGGAGCTTGGTTGGCGGACTGATTTACTTAACTCACACACGACCCGACATTGCATTTCCTGTTGGTATTATTTCTAAGTTTATGCAACATCCTTCAAAGGTTCATTATGGAGCAGCAAAAAGAGTCTTACGTTACATTGCCGGAACTATGGAGTATGGAATTTGGTATTCTAAATCCTCTAATTTCAAACTATATGGATTCACTGATAGTGATTGGGCAGGATCATTAGATGATAGACGAAGCATTTCAGCCAATGTTTTCACTTTAGGGTCAGGAGCGATCACTTGGAGCTCAAAGAAACAAGCAACAGTGGCGCTGTCAACATCAGAAGCAGAATATGTTGCAGCAACTTCAGCAGCGTGTCAAGCCATTTGGCTAAGAAGAATGTTAGCTGACCTTCAACAAGAGCAAAAAGGGACAACAAAGATATTTTGTGATAATAAAGCAACTATTTCTATGACAAAGAACCCAGCGTTTCACAGTAGAACAAAACATATTGAACTTCGACATCACTATATTCGTGATCTTGTTGCAGACGAAGAAATTGTCTTGGAATATTGTAACACCGATGAACAGCTAGCAGACATACTTACCAAGGCTTTGTCAAAAGAAAAGTTTTGCTACTTCAGACGATTACTTGGCATTTGCAACTTTGAATCAAGGGGGAGTGTTGAGATATGA

Coding sequence (CDS)

ATGTGTTATGACGAAGCAGCTGAAAAAGAAGAGTGGAAGAAAGCCATGGTAGAAGAGATGCAGTCCATTGAGAAAAATGGAACATGGGAGATGGTTGACTTACCAAACGGAAAAAATGCAATCAATTTGAAATGGGTGTTCAAGACAAAATTTGCACCAGATGGAAGCATACAAAAGCATAAGGCCCGTCTTGTAGCAAAAGGGTATGCACAACAACAAGGTATAGATTTTGAAGAAACTTTTTCTCCAGTAGCTCGTTTTGAAACTGTAAGAACTATTCTAGCATTAGCAGCAGAATTGCGGTGGCCAGTTTATCAGTTTGATGTTAAGTCAGCATTTCTTAACGGAGATTTACAAGAAGAGGTTTATGTAGCACAACCAGAAGGATTCATAAAGAAGGACAAAGAAACAAAGGTATACAAGTTGAGAAAGGCACTATACGGATTAAAGCAGGCCCCTCGAGCTTGGTACAGCAAGATTGATGGGTATTTTCAAAAGAAAGGATACATGAGAAGTGAGAATGAGCCTACTTTATATGTGAAGAAGGAAGGTAAAAGTGATTTCATCATTATTTGCCTCTATGTTGACGATATTATTTACACTAGCTCTTCTAACTCTCTTTTGGATAAATTTAAGTCTCAAATGATGAGTGAATTTGAGATGTCAGATATGGGTCTATTGCACTATTTTCTTGGTCTTGAAGTATATCAAGTTGAAGATGGAATTTTTATTTCACAAAGAAAATATGCCAAAGATATTATGAGTAAATTTGGTATGCTTAATTGTAAGCCTGCAGCTACACCTATGAATATTAATGAGAAATTACAACATGATGATGGAGCAGAAATGACAGATGCTAGAAGGTTCAGGAGCTTGGTTGGCGGACTGATTTACTTAACTCACACACGACCCGACATTGCATTTCCTGTTGGTATTATTTCTAAGTTTATGCAACATCCTTCAAAGGTTCATTATGGAGCAGCAAAAAGAGTCTTACGTTACATTGCCGGAACTATGGAGTATGGAATTTGGTATTCTAAATCCTCTAATTTCAAACTATATGGATTCACTGATAGTGATTGGGCAGGATCATTAGATGATAGACGAAGCATTTCAGCCAATGTTTTCACTTTAGGGTCAGGAGCGATCACTTGGAGCTCAAAGAAACAAGCAACAGTGGCGCTGTCAACATCAGAAGCAGAATATGTTGCAGCAACTTCAGCAGCGTGTCAAGCCATTTGGCTAAGAAGAATGTTAGCTGACCTTCAACAAGAGCAAAAAGGGACAACAAAGATATTTTGTGATAATAAAGCAACTATTTCTATGACAAAGAACCCAGCGTTTCACAGTAGAACAAAACATATTGAACTTCGACATCACTATATTCGTGATCTTGTTGCAGACGAAGAAATTGTCTTGGAATATTGTAACACCGATGAACAGCTAGCAGACATACTTACCAAGGCTTTGTCAAAAGAAAAGTTTTGCTACTTCAGACGATTACTTGGCATTTGCAACTTTGAATCAAGGGGGAGTGTTGAGATATGA
Homology
[Close]
BLAST of CmoCh03G005400 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 2.7e-115
Identity = 215/506 (42.49%), Postives = 333/506 (65.81%), Query Frame = 1 

Query: 8    EKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKARLVAK 67
            EK +  KAM EEM+S++KNGT+++V+LP GK  +  KWVFK K   D  + ++KARLV K
Sbjct: 822  EKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVK 881

Query: 68   GYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQEEVYVAQP 127
            G+ Q++GIDF+E FSPV +  ++RTIL+LAA L   V Q DVK+AFL+GDL+EE+Y+ QP
Sbjct: 882  GFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQP 941

Query: 128  EGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYVKKEGKSD 187
            EGF    K+  V KL K+LYGLKQAPR WY K D + + + Y+++ ++P +Y K+  +++
Sbjct: 942  EGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENN 1001

Query: 188  FIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDG--IFIS 247
            FII+ LYVDD++       L+ K K  +   F+M D+G     LG+++ +      +++S
Sbjct: 1002 FIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLS 1061

Query: 248  QRKYAKDIMSKFGMLNCKPAATP----MNINEKLQHDDGAEMTDARR--FRSLVGGLIY- 307
            Q KY + ++ +F M N KP +TP    + +++K+      E  +  +  + S VG L+Y 
Sbjct: 1062 QEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYA 1121

Query: 308  LTHTRPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTD 367
            +  TRPDIA  VG++S+F+++P K H+ A K +LRY+ GT    + +  S    L G+TD
Sbjct: 1122 MVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTD 1181

Query: 368  SDWAGSLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRM 427
            +D AG +D+R+S +  +FT   GAI+W SK Q  VALST+EAEY+AAT    + IWL+R 
Sbjct: 1182 ADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRF 1241

Query: 428  LADLQQEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVADEEIVLEYCNT 487
            L +L   QK    ++CD+++ I ++KN  +H+RTKHI++R+H+IR++V DE + +   +T
Sbjct: 1242 LQELGLHQKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKIST 1301

Query: 488  DEQLADILTKALSKEKFCYFRRLLGI 505
            +E  AD+LTK + + KF   + L+G+
Sbjct: 1302 NENPADMLTKVVPRNKFELCKELVGM 1325

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BLAST of CmoCh03G005400 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 347.1 bits (889), Expect = 3.4e-94
Identity = 190/504 (37.70%), Postives = 304/504 (60.32%), Query Frame = 1 

Query: 8    EKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKARLVAK 67
            +K  W++A+  E+ + + N TW +   P  KN ++ +WVF  K+   G+  ++KARLVA+
Sbjct: 902  DKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVAR 961

Query: 68   GYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQEEVYVAQP 127
            G+ Q+  ID+EETF+PVAR  + R IL+L  +    V+Q DVK+AFLNG L+EE+Y+  P
Sbjct: 962  GFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLP 1021

Query: 128  EGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYVKKEGK-S 187
            +G         V KL KA+YGLKQA R W+   +   ++  ++ S  +  +Y+  +G  +
Sbjct: 1022 QGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNIN 1081

Query: 188  DFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDGIFISQ 247
            + I + LYVDD++  +   + ++ FK  +M +F M+D+  + +F+G+ +   ED I++SQ
Sbjct: 1082 ENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQ 1141

Query: 248  RKYAKDIMSKFGMLNCKPAATPM--NINEKLQHDDGAEMTDARRFRSLVGGLIY-LTHTR 307
              Y K I+SKF M NC   +TP+   IN +L + D    T     RSL+G L+Y +  TR
Sbjct: 1142 SAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC---RSLIGCLMYIMLCTR 1201

Query: 308  PDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNF--KLYGFTDSDW 367
            PD+   V I+S++    +   +   KRVLRY+ GT++  + + K+  F  K+ G+ DSDW
Sbjct: 1202 PDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDW 1261

Query: 368  AGSLDDRRSISANVFTL-GSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLA 427
            AGS  DR+S +  +F +     I W++K+Q +VA S++EAEY+A   A  +A+WL+ +L 
Sbjct: 1262 AGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLT 1321

Query: 428  DLQQEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVADEEIVLEYCNTDE 487
             +  + +   KI+ DN+  IS+  NP+ H R KHI++++H+ R+ V +  I LEY  T+ 
Sbjct: 1322 SINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTEN 1381

Query: 488  QLADILTKALSKEKFCYFRRLLGI 505
            QLADI TK L   +F   R  LG+
Sbjct: 1382 QLADIFTKPLPAARFVELRDKLGL 1400

[Close]
BLAST of CmoCh03G005400 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.3e-45
Identity = 98/225 (43.56%), Postives = 140/225 (62.22%), Query Frame = 1 

Query: 191 ICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDGIFISQRKYA 250
           + LYVDDI+ T SSN+LL+    Q+ S F M D+G +HYFLG+++     G+F+SQ KYA
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 251 KDIMSKFGMLNCKPAATPMNINEKLQHD-DGAEMTDARRFRSLVGGLIYLTHTRPDIAFP 310
           + I++  GML+CKP +TP+ +  KL      A+  D   FRS+VG L YLT TRPDI++ 
Sbjct: 63  EQILNNAGMLDCKPMSTPLPL--KLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 122

Query: 311 VGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSDWAGSLDDRR 370
           V I+ + M  P+   +   KRVLRY+ GT+ +G++  K+S   +  F DSDWAG    RR
Sbjct: 123 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 182

Query: 371 SISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIW 415
           S +     LG   I+WS+K+Q TV+ S++E EY A    A +  W
Sbjct: 183 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CmoCh03G005400 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 170.2 bits (430), Expect = 5.7e-41
Identity = 99/307 (32.25%), Postives = 162/307 (52.77%), Query Frame = 1 

Query: 108 DVKSAFLNGDLQEEVYVAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKK 167
           DV +AFLN  + E +YV QP GF+ +     V++L   +YGLKQAP  W   I+   +K 
Sbjct: 2   DVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKI 61

Query: 168 GYMRSENEPTLYVKKEGKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLL 227
           G+ R E E  LY +       I I +YVDD++  + S  + D+ K ++   + M D+G +
Sbjct: 62  GFCRHEGEHGLYFRSTSDGP-IYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 121

Query: 228 HYFLGLEVYQVEDG-IFISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDA 287
             FLGL ++Q  +G I +S + Y     S+  +   K   TP+  ++ L       + D 
Sbjct: 122 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 181

Query: 288 RRFRSLVGGLIYLTHT-RPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWY 347
             ++S+VG L++  +T RPDI++PV ++S+F++ P  +H  +A+RVLRY+  T    + Y
Sbjct: 182 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 241

Query: 348 SKSSNFKLYGFTDSDWAGSLDDRRSISANVFTLGSGAITWSSKK-QATVALSTSEAEYVA 407
              S   L  + D+      D   S    V  L    +TWSSKK +  + + ++EAEY+ 
Sbjct: 242 RSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 301

Query: 408 ATSAACQ 412
           A+    +
Sbjct: 302 ASETVME 307

[Close]
BLAST of CmoCh03G005400 vs. Swiss-Prot
Match: YL14B_YEAST (Transposon Ty1-LR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-LR4 PE=5 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.0e-26
Identity = 138/543 (25.41%), Postives = 240/543 (44.20%), Query Frame = 1 

Query: 3    YDEAA-------EKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKN-----AINLKWVFKTK 62
            YDEA        EKE++ +A  +E+  + K  TW+  +  + K       IN  ++F  K
Sbjct: 1234 YDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKK 1293

Query: 63   FAPDGSIQKHKARLVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVK 122
               DG+   HKAR VA+G  Q          S       + T L+LA +  + + Q D+ 
Sbjct: 1294 --RDGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDIS 1353

Query: 123  SAFLNGDLQEEVYVAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGY-FQKKGY 182
            SA+L  D++EE+Y+  P      D   K+ +L+K+LYGLKQ+   WY  I  Y  Q+ G 
Sbjct: 1354 SAYLYADIKEELYIRPPPHLGMND---KLIRLKKSLYGLKQSGANWYETIKSYLIQQCGM 1413

Query: 183  MRSENEPTLYVKKEGKSDFIIICLYVDDIIYTS----SSNSLLDKFKSQ---MMSEFEMS 242
                    ++     K+  + ICL+VDD++  S    S+  +++K K Q    +     S
Sbjct: 1414 EEVRGWSCVF-----KNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGES 1473

Query: 243  DMGLLHYFLGLEVYQVEDGIFISQRKYAKDIMSKFGMLNCKPAATP-MNI---------- 302
            D  + +  LGLE+            KY +    K GM N      P +N+          
Sbjct: 1474 DEEIQYDILGLEI------------KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLS 1533

Query: 303  ----------NEKLQHDDGAEMTDARRFRSLVGGLIYLTHT-RPDIAFPVGIISKFMQHP 362
                       ++L+ D+          + L+G   Y+ +  R D+ + +  +++ +  P
Sbjct: 1534 APGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFP 1593

Query: 363  SKVHYGAAKRVLRYIAGTMEYGIWYSKSS----NFKLYGFTDSDWAGSLDDRRSISANVF 422
            S+        +++++  T +  + + K+     + KL   +D+ + G+    +S   N+F
Sbjct: 1594 SRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASY-GNQPYYKSQIGNIF 1653

Query: 423  TLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLADLQQE--QKGTTK-IF 482
             L    I   S K +    ST+EAE      A  +AI L   L+ L QE  +K   K + 
Sbjct: 1654 LLNGKVIGGKSTKASLTCTSTTEAE----IHAVSEAIPLLNNLSHLVQELNKKPIIKGLL 1713

Query: 483  CDNKATISMTKNPAFHS-RTKHIELRHHYIRDLVADEEIVLEYCNTDEQLADILTKALSK 496
             D+++TIS+ K+      R +    +   +RD V+   + + Y  T + +AD++TK L  
Sbjct: 1714 TDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPI 1746

[Close]
BLAST of CmoCh03G005400 vs. TrEMBL
Match: Q6L3N8_SOLDE (Putative gag-pol polyprotein, identical OS=Solanum demissum GN=SDM1_42t00010 PE=4 SV=1)

HSP 1 Score: 734.6 bits (1895), Expect = 8.5e-209
Identity = 350/513 (68.23%), Postives = 430/513 (83.82%), Query Frame = 1 

Query: 1    MCYDEAAEKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKH 60
            +CY+EA E+ EWK AM+EE+Q+IE+N TWE+VD P GKN I LKWVF+TK+  DGSIQKH
Sbjct: 820  ICYEEAVEQSEWKNAMIEEIQAIERNSTWELVDAPEGKNVIGLKWVFRTKYNADGSIQKH 879

Query: 61   KARLVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQE 120
            KARLVAKGY+QQQG+DF+ETFSPVARFETVR +LALAA+L  PVYQFDVKSAFLNGDL+E
Sbjct: 880  KARLVAKGYSQQQGVDFDETFSPVARFETVRVVLALAAQLHLPVYQFDVKSAFLNGDLEE 939

Query: 121  EVYVAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYV 180
            EVYV+QP+GF+    E KVYKLRKALYGLKQAPRAWYSKID +FQ  G+ RS+NEPTLY+
Sbjct: 940  EVYVSQPQGFMITGNENKVYKLRKALYGLKQAPRAWYSKIDSFFQGSGFRRSDNEPTLYL 999

Query: 181  KKEGKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVED 240
            KK+G  +F+++CLYVDD+IY  SS SL++ FKS MM  FEMSD+GLL YFLGLEV Q +D
Sbjct: 1000 KKQGTDEFLLVCLYVDDMIYIGSSKSLVNDFKSNMMRNFEMSDLGLLKYFLGLEVIQDKD 1059

Query: 241  GIFISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDARRFRSLVGGLIYLT 300
            GIFISQ+KYA+D++ KF M+NC+ A TPMNINEKLQ  DG E  + + FRSLVGGL YLT
Sbjct: 1060 GIFISQKKYAEDLLKKFQMMNCEVATTPMNINEKLQRADGTEKANPKLFRSLVGGLNYLT 1119

Query: 301  HTRPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSD 360
            HTRPDIAF V ++S+F+Q P+K H+GAAKRVLRY+AGT ++GIWYSK+ NF+L GFTDSD
Sbjct: 1120 HTRPDIAFSVSVVSRFLQSPTKQHFGAAKRVLRYVAGTTDFGIWYSKAPNFRLVGFTDSD 1179

Query: 361  WAGSLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLA 420
            +AG LDDR+S S + F+ GSG +TWSSKKQ TVALSTSEAEY AA+ AA QA+WLR++L 
Sbjct: 1180 YAGCLDDRKSTSGSCFSFGSGVVTWSSKKQETVALSTSEAEYTAASLAARQALWLRKLLE 1239

Query: 421  DLQQEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVADEEIVLEYCNTDE 480
            D   EQK +T+IF D+K+ I+M KNP+FH RTKHI++++H+IR LVAD  IVL++C+T+E
Sbjct: 1240 DFSYEQKESTEIFSDSKSAIAMAKNPSFHGRTKHIDVQYHFIRTLVADGRIVLKFCSTNE 1299

Query: 481  QLADILTKALSKEKFCYFRRLLGICNFESRGSV 514
            Q ADI TK+L + K  YFR  LG+C+FESRGSV
Sbjct: 1300 QAADIFTKSLPQAKHEYFRLQLGVCDFESRGSV 1332

[Close]
BLAST of CmoCh03G005400 vs. TrEMBL
Match: B6REL8_9BRAS (Integrase OS=Boechera divaricarpa GN=TnInt1 PE=4 SV=1)

HSP 1 Score: 708.0 bits (1826), Expect = 8.5e-201
Identity = 336/511 (65.75%), Postives = 417/511 (81.60%), Query Frame = 1 

Query: 4    DEAAEKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKAR 63
            +EAA KEEW+KAM EE+ SIEKN TW++V+LP  K++I +KWVFKTK+  D +IQK+KAR
Sbjct: 654  NEAATKEEWRKAMEEEIASIEKNQTWQLVELPEEKHSIGVKWVFKTKYQADDNIQKYKAR 713

Query: 64   LVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQEEVY 123
            LV KGYAQ+ G+D+E+TFSPVARF+T+RT+LAL A + WP+YQFDVKSAFLNG+L+EEVY
Sbjct: 714  LVVKGYAQEYGVDYEKTFSPVARFDTLRTLLALGAYMHWPIYQFDVKSAFLNGELREEVY 773

Query: 124  VAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYVKKE 183
            V QPEGFI + +E  VY+L KALYGLKQAPRAWY+KID YF + G+ RS++EPTLY+KK+
Sbjct: 774  VDQPEGFIVEGREGFVYRLYKALYGLKQAPRAWYNKIDSYFAETGFERSKSEPTLYIKKQ 833

Query: 184  GKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDGIF 243
            G  D +++CLYVDD+IY  SS SL+ +FK+ MM +FEM+D+GLL++FLGLEV QVEDG+F
Sbjct: 834  GAGDILVVCLYVDDMIYMGSSASLVSEFKASMMEKFEMTDLGLLYFFLGLEVKQVEDGVF 893

Query: 244  ISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDARRFRSLVGGLIYLTHTR 303
            +SQ KYA D++ +F M  C    TPMN+NEKL   DG E  DA +FRSLVGGLIYLTHTR
Sbjct: 894  VSQHKYACDLLKRFDMAGCNAVETPMNVNEKLLAGDGTEKADATKFRSLVGGLIYLTHTR 953

Query: 304  PDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSDWAG 363
            PDI F V  IS+FM  P+K H+GAAKR+LRYIA T EYG+WY   S FKL GFTDSDWAG
Sbjct: 954  PDICFAVSAISRFMHGPTKQHFGAAKRLLRYIARTAEYGLWYCSVSKFKLVGFTDSDWAG 1013

Query: 364  SLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLADLQ 423
             + DR+S S +VF LGSGA+ WSSKKQ   ALS+SEAEY AAT+AACQA+WLRR+LAD++
Sbjct: 1014 CVQDRKSTSGHVFNLGSGAVCWSSKKQNVTALSSSEAEYTAATAAACQAVWLRRILADIK 1073

Query: 424  QEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVADEEIVLEYCNTDEQLA 483
            QEQ+  T IFCDNKATI+M KNPA+H RTKHI ++ H+IRDLV++  + LEYC+T+EQ A
Sbjct: 1074 QEQEKATTIFCDNKATIAMNKNPAYHGRTKHISIKVHFIRDLVSEGSVTLEYCSTNEQSA 1133

Query: 484  DILTKALSKEKFCYFRRLLGICNFESRGSVE 515
            D+LTKALS+ KF YFR  LG+C FES  SVE
Sbjct: 1134 DVLTKALSRNKFDYFRSKLGVCKFESMESVE 1164

[Close]
BLAST of CmoCh03G005400 vs. TrEMBL
Match: A5AHH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032906 PE=4 SV=1)

HSP 1 Score: 698.4 bits (1801), Expect = 6.7e-198
Identity = 336/512 (65.62%), Postives = 411/512 (80.27%), Query Frame = 1 

Query: 3    YDEAAEKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKA 62
            ++EA EKEEW  AM EE+ +IEKN TWE+V+LP  KN I +KWVF+TK+  DGSIQKHKA
Sbjct: 922  FEEAVEKEEWCSAMKEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKA 981

Query: 63   RLVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQEEV 122
            RLVAKGYAQQ G+D+++TFSPVARFETVRT+LALAA + W VYQFDVKSAFLNG+L EEV
Sbjct: 982  RLVAKGYAQQHGVDYDDTFSPVARFETVRTLLALAAHMHWCVYQFDVKSAFLNGELVEEV 1041

Query: 123  YVAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYVKK 182
            Y +QPEGFI  DKE  VY+L+ ALYGLKQAPRAWYSKID YF + G+ +S++EP LY+K+
Sbjct: 1042 YXSQPEGFIVPDKEEHVYRLKXALYGLKQAPRAWYSKIDSYFVENGFEKSKSEPNLYLKR 1101

Query: 183  EGKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDGI 242
            +GK+D +IICLYVDD+IY  SS+SL+++FK+ M  +FEMSD+GLLH+FLGLEV QVEDG+
Sbjct: 1102 QGKNDLLIICLYVDDMIYMGSSSSLINEFKACMKKKFEMSDLGLLHFFLGLEVKQVEDGV 1161

Query: 243  FISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDARRFRSLVGGLIYLTHT 302
            F+SQRKYA D++ KF MLNCK  A PMN NEKLQ +DG E  DARRFRSLVGGLIYLTHT
Sbjct: 1162 FVSQRKYAVDLLKKFNMLNCKVVAIPMNSNEKLQAEDGTERADARRFRSLVGGLIYLTHT 1221

Query: 303  RPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSDWA 362
            RPDIAF VG+IS+FM  PSK H GA KR+LRYIAGT ++ IW      FKL G+TDSDWA
Sbjct: 1222 RPDIAFAVGVISRFMHCPSKQHLGATKRLLRYIAGTYDFRIWXGHVQEFKLVGYTDSDWA 1281

Query: 363  GSLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLADL 422
            G L+DR+S S  +F+LGS                   AEY  ATS+ACQA+WLRR+LAD+
Sbjct: 1282 GCLEDRKSTSGYMFSLGS-------------------AEYTVATSSACQAVWLRRILADI 1341

Query: 423  QQEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVADEEIVLEYCNTDEQL 482
             QE +  T I+CDNKA I+MTKNPA+H RTKH+++R H+IRDLV + ++VL+YCNT+EQ+
Sbjct: 1342 NQEHEEPTVIYCDNKAAIAMTKNPAYHGRTKHVDIRVHFIRDLVVEGKVVLQYCNTNEQV 1401

Query: 483  ADILTKALSKEKFCYFRRLLGICNFESRGSVE 515
            AD+LTKALS++K  YFR  LG+CNFESR SVE
Sbjct: 1402 ADVLTKALSRDKHVYFRSKLGVCNFESRRSVE 1414

[Close]
BLAST of CmoCh03G005400 vs. TrEMBL
Match: A5AWP3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020777 PE=4 SV=1)

HSP 1 Score: 662.5 bits (1708), Expect = 4.1e-187
Identity = 317/466 (68.03%), Postives = 385/466 (82.62%), Query Frame = 1 

Query: 3    YDEAAEKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKA 62
            ++EA EKEEW  AM EE+ +IEKN TWE+V+LP  KN I +KWVF+TK+  DGSIQKHKA
Sbjct: 751  FEEAVEKEEWCSAMKEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKA 810

Query: 63   RLVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQEEV 122
            RLVAKGYAQQ G+D+++TFSPVARFETVRT+LALAA + W  YQFDVKSAFLNG+L EEV
Sbjct: 811  RLVAKGYAQQHGVDYDDTFSPVARFETVRTLLALAAHMHWCXYQFDVKSAFLNGELVEEV 870

Query: 123  YVAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYVKK 182
            YV+Q EGFI   KE  VY+L+KALYGLKQAPRAWYSKID YF + G+ RS++EP LY+K+
Sbjct: 871  YVSQXEGFIVPXKEEHVYRLKKALYGLKQAPRAWYSKIDSYFVENGFERSKSEPNLYLKR 930

Query: 183  EGKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDGI 242
            +GK+D +IICLYVDD+IY  SS+SL+++FK+ M  +FEMS++GLLH+FL LEV QVEDG+
Sbjct: 931  QGKNDLLIICLYVDDMIYMGSSSSLINEFKACMKKKFEMSBLGLLHFFLXLEVKQVEDGV 990

Query: 243  FISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDARRFRSLVGGLIYLTHT 302
            F+SQRKY  D++ KF MLNCK  AT MN NEKLQ +DG E  DARRF SLV GLIYLTHT
Sbjct: 991  FVSQRKYXVDLLKKFNMLNCKVVATXMNSNEKLQAEDGTERADARRFXSLVRGLIYLTHT 1050

Query: 303  RPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSDWA 362
            RPDIAFPV +IS+FM  PSK H GAAKR+LRYI GT ++GIWY     FKL G+TDSDWA
Sbjct: 1051 RPDIAFPVEVISRFMHCPSKQHLGAAKRLLRYIVGTYDFGIWYGHVQEFKLVGYTDSDWA 1110

Query: 363  GSLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLADL 422
            G L+DR+S S  +F+LGSGA+ WSSKKQA  ALS+SEAEY AATS+ACQA+WLRR+LAD+
Sbjct: 1111 GCLEDRKSTSGYMFSLGSGAVCWSSKKQAVTALSSSEAEYTAATSSACQAVWLRRILADI 1170

Query: 423  QQEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVAD 469
             QE +  T I+CDNKA I+MTKNPA+H RTKH+++R H+IRDLV +
Sbjct: 1171 NQEHEEPTVIYCDNKAAIAMTKNPAYHGRTKHVDIRVHFIRDLVVE 1216

[Close]
BLAST of CmoCh03G005400 vs. TrEMBL
Match: A0A151TFT3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_012191 PE=4 SV=1)

HSP 1 Score: 621.3 bits (1601), Expect = 1.0e-174
Identity = 289/502 (57.57%), Postives = 390/502 (77.69%), Query Frame = 1 

Query: 3   YDEAAEKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKA 62
           ++ A++++ W KAM EE++ IEKN TW++VD P  K+ I +KWV+KTK  PDG+IQKHKA
Sbjct: 180 FEAASKQQVWVKAMEEEIKMIEKNNTWDLVDYPKDKDIIGVKWVYKTKLNPDGTIQKHKA 239

Query: 63  RLVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQEEV 122
           RLVAKGY+QQ G+D+ ETF+PVAR +T+R ++ALAAE  W ++Q DVKSAFLNG LQEE+
Sbjct: 240 RLVAKGYSQQPGVDYNETFAPVARLDTIRALIALAAEKGWNIFQLDVKSAFLNGVLQEEI 299

Query: 123 YVAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYVKK 182
           YV QP+GFI K  E KV +LRKALYGLKQAPRAWYS+ID YF   G+ RS++EPTLY+K 
Sbjct: 300 YVEQPQGFISKGNEDKVLRLRKALYGLKQAPRAWYSRIDQYFTDHGFRRSKSEPTLYIKT 359

Query: 183 EGKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDGI 242
           +G+ D +I+ LYVDD+IYT ++  ++ +FK  MM  FEM+D+GL++YFLG+EV Q + GI
Sbjct: 360 QGQYDTLIVSLYVDDLIYTGNNMKMMTEFKEDMMKTFEMTDLGLMNYFLGIEVSQKKKGI 419

Query: 243 FISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDARRFRSLVGGLIYLTHT 302
           FI Q+KY + ++ KF M  CK   TP+   EKLQ DDGA   DA R+RSL+G L+YLT T
Sbjct: 420 FICQKKYTEALLKKFKMSGCKTVTTPLVTKEKLQKDDGAPDADASRYRSLIGSLLYLTAT 479

Query: 303 RPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSDWA 362
           RPDI + V ++S+FMQ PS++H+GAAKR+LRY+ GT E+GIWY   +N  L G+TD D A
Sbjct: 480 RPDITYAVSLLSRFMQKPSQIHFGAAKRILRYLQGTKEFGIWYKTMTNSSLLGYTDCDLA 539

Query: 363 GSLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLADL 422
           GS+DD +S S   F+LGSG  +W+SKK ATVA ST+EAEYVAA  A  QAIWLRR+LA++
Sbjct: 540 GSVDDMKSTSGYAFSLGSGIFSWASKKHATVAQSTAEAEYVAAAEATSQAIWLRRILAEM 599

Query: 423 QQEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVADEEIVLEYCNTDEQL 482
           +++Q G T I+CDNK+TI+MTKNP  HSRTKHI +++H+I+++   ++I +EYC T+EQ+
Sbjct: 600 REQQDGPTTIYCDNKSTIAMTKNPKHHSRTKHIAIKYHFIKEVETTKKIKMEYCKTEEQV 659

Query: 483 ADILTKALSKEKFCYFRRLLGI 505
           AD+ TKAL + +F  FR ++G+
Sbjct: 660 ADVFTKALPRTRFEQFRTMIGV 681

[Close]
BLAST of CmoCh03G005400 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 364.8 bits (935), Expect = 8.9e-101
Identity = 203/515 (39.42%), Postives = 307/515 (59.61%), Query Frame = 1 

Query: 3   YDEAAEKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKA 62
           Y+EA E   W  AM +E+ ++E   TWE+  LP  K  I  KWV+K K+  DG+I+++KA
Sbjct: 89  YNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKA 148

Query: 63  RLVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQEEV 122
           RLVAKGY QQ+GIDF ETFSPV +  +V+ ILA++A   + ++Q D+ +AFLNGDL EE+
Sbjct: 149 RLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEI 208

Query: 123 YVAQPEGFIKKDKET----KVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTL 182
           Y+  P G+  +  ++     V  L+K++YGLKQA R W+ K        G+++S ++ T 
Sbjct: 209 YMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTY 268

Query: 183 YVKKEGKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQV 242
           ++K      F+ + +YVDDII  S++++ +D+ KSQ+ S F++ D+G L YFLGLE+ + 
Sbjct: 269 FLKITATL-FLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARS 328

Query: 243 EDGIFISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDARRFRSLVGGLIY 302
             GI I QRKYA D++ + G+L CKP++ PM+ +       G +  DA+ +R L+G L+Y
Sbjct: 329 AAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMY 388

Query: 303 LTHTRPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTD 362
           L  TR DI+F V  +S+F + P   H  A  ++L YI GT+  G++YS  +  +L  F+D
Sbjct: 389 LQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSD 448

Query: 363 SDWAGSLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRM 422
           + +    D RRS +     LG+  I+W SKKQ  V+ S++EAEY A + A  + +WL + 
Sbjct: 449 ASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQF 508

Query: 423 LADLQQEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRD-LVADEEIVLEYCN 482
             +LQ      T +FCDN A I +  N  FH RTKHIE   H +R+  V    +   +  
Sbjct: 509 FRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQA 568

Query: 483 TDEQLADILTKALS---KEKFCYFRRLLGICNFES 510
            DEQ  D  T+ LS   +    Y   + G+   E+
Sbjct: 569 YDEQ--DGFTEYLSPILRGTIMYIVSMFGLAGLEA 600

[Close]
BLAST of CmoCh03G005400 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 185.7 bits (470), Expect = 7.4e-47
Identity = 98/225 (43.56%), Postives = 140/225 (62.22%), Query Frame = 1 

Query: 191 ICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDGIFISQRKYA 250
           + LYVDDI+ T SSN+LL+    Q+ S F M D+G +HYFLG+++     G+F+SQ KYA
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 251 KDIMSKFGMLNCKPAATPMNINEKLQHD-DGAEMTDARRFRSLVGGLIYLTHTRPDIAFP 310
           + I++  GML+CKP +TP+ +  KL      A+  D   FRS+VG L YLT TRPDI++ 
Sbjct: 63  EQILNNAGMLDCKPMSTPLPL--KLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 122

Query: 311 VGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSDWAGSLDDRR 370
           V I+ + M  P+   +   KRVLRY+ GT+ +G++  K+S   +  F DSDWAG    RR
Sbjct: 123 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 182

Query: 371 SISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIW 415
           S +     LG   I+WS+K+Q TV+ S++E EY A    A +  W
Sbjct: 183 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CmoCh03G005400 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-19
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 12  WKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKARLVAKGYAQ 71
           W +AM EE+ ++ +N TW +V  P  +N +  KWVFKTK   DG++ + KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 72  QQGIDFEETFSPVARFETVRTILALAAEL 101
           ++GI F ET+SPV R  T+RTIL +A +L
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVAQQL 128

[Close]
BLAST of CmoCh03G005400 vs. TAIR10
Match: ATMG00240.1 (ATMG00240.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-11
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1 

Query: 297 IYLTHTRPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGF 356
           +YLT TRPD+ F V  +S+F          A  +VL Y+ GT+  G++YS +S+ +L  F
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 357 TDSDWAGSLDDRRSIS 373
            DSDWA   D RRS++
Sbjct: 61  ADSDWASCPDTRRSVT 76

[Close]
BLAST of CmoCh03G005400 vs. NCBI nr
Match: gi|47824985|gb|AAT38758.1| (Putative gag-pol polyprotein, identical [Solanum demissum])

HSP 1 Score: 734.6 bits (1895), Expect = 1.2e-208
Identity = 350/513 (68.23%), Postives = 430/513 (83.82%), Query Frame = 1 

Query: 1    MCYDEAAEKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKH 60
            +CY+EA E+ EWK AM+EE+Q+IE+N TWE+VD P GKN I LKWVF+TK+  DGSIQKH
Sbjct: 820  ICYEEAVEQSEWKNAMIEEIQAIERNSTWELVDAPEGKNVIGLKWVFRTKYNADGSIQKH 879

Query: 61   KARLVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQE 120
            KARLVAKGY+QQQG+DF+ETFSPVARFETVR +LALAA+L  PVYQFDVKSAFLNGDL+E
Sbjct: 880  KARLVAKGYSQQQGVDFDETFSPVARFETVRVVLALAAQLHLPVYQFDVKSAFLNGDLEE 939

Query: 121  EVYVAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYV 180
            EVYV+QP+GF+    E KVYKLRKALYGLKQAPRAWYSKID +FQ  G+ RS+NEPTLY+
Sbjct: 940  EVYVSQPQGFMITGNENKVYKLRKALYGLKQAPRAWYSKIDSFFQGSGFRRSDNEPTLYL 999

Query: 181  KKEGKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVED 240
            KK+G  +F+++CLYVDD+IY  SS SL++ FKS MM  FEMSD+GLL YFLGLEV Q +D
Sbjct: 1000 KKQGTDEFLLVCLYVDDMIYIGSSKSLVNDFKSNMMRNFEMSDLGLLKYFLGLEVIQDKD 1059

Query: 241  GIFISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDARRFRSLVGGLIYLT 300
            GIFISQ+KYA+D++ KF M+NC+ A TPMNINEKLQ  DG E  + + FRSLVGGL YLT
Sbjct: 1060 GIFISQKKYAEDLLKKFQMMNCEVATTPMNINEKLQRADGTEKANPKLFRSLVGGLNYLT 1119

Query: 301  HTRPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSD 360
            HTRPDIAF V ++S+F+Q P+K H+GAAKRVLRY+AGT ++GIWYSK+ NF+L GFTDSD
Sbjct: 1120 HTRPDIAFSVSVVSRFLQSPTKQHFGAAKRVLRYVAGTTDFGIWYSKAPNFRLVGFTDSD 1179

Query: 361  WAGSLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLA 420
            +AG LDDR+S S + F+ GSG +TWSSKKQ TVALSTSEAEY AA+ AA QA+WLR++L 
Sbjct: 1180 YAGCLDDRKSTSGSCFSFGSGVVTWSSKKQETVALSTSEAEYTAASLAARQALWLRKLLE 1239

Query: 421  DLQQEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVADEEIVLEYCNTDE 480
            D   EQK +T+IF D+K+ I+M KNP+FH RTKHI++++H+IR LVAD  IVL++C+T+E
Sbjct: 1240 DFSYEQKESTEIFSDSKSAIAMAKNPSFHGRTKHIDVQYHFIRTLVADGRIVLKFCSTNE 1299

Query: 481  QLADILTKALSKEKFCYFRRLLGICNFESRGSV 514
            Q ADI TK+L + K  YFR  LG+C+FESRGSV
Sbjct: 1300 QAADIFTKSLPQAKHEYFRLQLGVCDFESRGSV 1332

[Close]
BLAST of CmoCh03G005400 vs. NCBI nr
Match: gi|158578541|gb|ABW74566.1| (integrase [Boechera divaricarpa])

HSP 1 Score: 708.0 bits (1826), Expect = 1.2e-200
Identity = 336/511 (65.75%), Postives = 417/511 (81.60%), Query Frame = 1 

Query: 4    DEAAEKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKAR 63
            +EAA KEEW+KAM EE+ SIEKN TW++V+LP  K++I +KWVFKTK+  D +IQK+KAR
Sbjct: 654  NEAATKEEWRKAMEEEIASIEKNQTWQLVELPEEKHSIGVKWVFKTKYQADDNIQKYKAR 713

Query: 64   LVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQEEVY 123
            LV KGYAQ+ G+D+E+TFSPVARF+T+RT+LAL A + WP+YQFDVKSAFLNG+L+EEVY
Sbjct: 714  LVVKGYAQEYGVDYEKTFSPVARFDTLRTLLALGAYMHWPIYQFDVKSAFLNGELREEVY 773

Query: 124  VAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYVKKE 183
            V QPEGFI + +E  VY+L KALYGLKQAPRAWY+KID YF + G+ RS++EPTLY+KK+
Sbjct: 774  VDQPEGFIVEGREGFVYRLYKALYGLKQAPRAWYNKIDSYFAETGFERSKSEPTLYIKKQ 833

Query: 184  GKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDGIF 243
            G  D +++CLYVDD+IY  SS SL+ +FK+ MM +FEM+D+GLL++FLGLEV QVEDG+F
Sbjct: 834  GAGDILVVCLYVDDMIYMGSSASLVSEFKASMMEKFEMTDLGLLYFFLGLEVKQVEDGVF 893

Query: 244  ISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDARRFRSLVGGLIYLTHTR 303
            +SQ KYA D++ +F M  C    TPMN+NEKL   DG E  DA +FRSLVGGLIYLTHTR
Sbjct: 894  VSQHKYACDLLKRFDMAGCNAVETPMNVNEKLLAGDGTEKADATKFRSLVGGLIYLTHTR 953

Query: 304  PDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSDWAG 363
            PDI F V  IS+FM  P+K H+GAAKR+LRYIA T EYG+WY   S FKL GFTDSDWAG
Sbjct: 954  PDICFAVSAISRFMHGPTKQHFGAAKRLLRYIARTAEYGLWYCSVSKFKLVGFTDSDWAG 1013

Query: 364  SLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLADLQ 423
             + DR+S S +VF LGSGA+ WSSKKQ   ALS+SEAEY AAT+AACQA+WLRR+LAD++
Sbjct: 1014 CVQDRKSTSGHVFNLGSGAVCWSSKKQNVTALSSSEAEYTAATAAACQAVWLRRILADIK 1073

Query: 424  QEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVADEEIVLEYCNTDEQLA 483
            QEQ+  T IFCDNKATI+M KNPA+H RTKHI ++ H+IRDLV++  + LEYC+T+EQ A
Sbjct: 1074 QEQEKATTIFCDNKATIAMNKNPAYHGRTKHISIKVHFIRDLVSEGSVTLEYCSTNEQSA 1133

Query: 484  DILTKALSKEKFCYFRRLLGICNFESRGSVE 515
            D+LTKALS+ KF YFR  LG+C FES  SVE
Sbjct: 1134 DVLTKALSRNKFDYFRSKLGVCKFESMESVE 1164

[Close]
BLAST of CmoCh03G005400 vs. NCBI nr
Match: gi|147771031|emb|CAN60238.1| (hypothetical protein VITISV_032906 [Vitis vinifera])

HSP 1 Score: 698.4 bits (1801), Expect = 9.7e-198
Identity = 336/512 (65.62%), Postives = 411/512 (80.27%), Query Frame = 1 

Query: 3    YDEAAEKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKA 62
            ++EA EKEEW  AM EE+ +IEKN TWE+V+LP  KN I +KWVF+TK+  DGSIQKHKA
Sbjct: 922  FEEAVEKEEWCSAMKEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKA 981

Query: 63   RLVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQEEV 122
            RLVAKGYAQQ G+D+++TFSPVARFETVRT+LALAA + W VYQFDVKSAFLNG+L EEV
Sbjct: 982  RLVAKGYAQQHGVDYDDTFSPVARFETVRTLLALAAHMHWCVYQFDVKSAFLNGELVEEV 1041

Query: 123  YVAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYVKK 182
            Y +QPEGFI  DKE  VY+L+ ALYGLKQAPRAWYSKID YF + G+ +S++EP LY+K+
Sbjct: 1042 YXSQPEGFIVPDKEEHVYRLKXALYGLKQAPRAWYSKIDSYFVENGFEKSKSEPNLYLKR 1101

Query: 183  EGKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDGI 242
            +GK+D +IICLYVDD+IY  SS+SL+++FK+ M  +FEMSD+GLLH+FLGLEV QVEDG+
Sbjct: 1102 QGKNDLLIICLYVDDMIYMGSSSSLINEFKACMKKKFEMSDLGLLHFFLGLEVKQVEDGV 1161

Query: 243  FISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDARRFRSLVGGLIYLTHT 302
            F+SQRKYA D++ KF MLNCK  A PMN NEKLQ +DG E  DARRFRSLVGGLIYLTHT
Sbjct: 1162 FVSQRKYAVDLLKKFNMLNCKVVAIPMNSNEKLQAEDGTERADARRFRSLVGGLIYLTHT 1221

Query: 303  RPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSDWA 362
            RPDIAF VG+IS+FM  PSK H GA KR+LRYIAGT ++ IW      FKL G+TDSDWA
Sbjct: 1222 RPDIAFAVGVISRFMHCPSKQHLGATKRLLRYIAGTYDFRIWXGHVQEFKLVGYTDSDWA 1281

Query: 363  GSLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLADL 422
            G L+DR+S S  +F+LGS                   AEY  ATS+ACQA+WLRR+LAD+
Sbjct: 1282 GCLEDRKSTSGYMFSLGS-------------------AEYTVATSSACQAVWLRRILADI 1341

Query: 423  QQEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVADEEIVLEYCNTDEQL 482
             QE +  T I+CDNKA I+MTKNPA+H RTKH+++R H+IRDLV + ++VL+YCNT+EQ+
Sbjct: 1342 NQEHEEPTVIYCDNKAAIAMTKNPAYHGRTKHVDIRVHFIRDLVVEGKVVLQYCNTNEQV 1401

Query: 483  ADILTKALSKEKFCYFRRLLGICNFESRGSVE 515
            AD+LTKALS++K  YFR  LG+CNFESR SVE
Sbjct: 1402 ADVLTKALSRDKHVYFRSKLGVCNFESRRSVE 1414

[Close]
BLAST of CmoCh03G005400 vs. NCBI nr
Match: gi|147789988|emb|CAN71759.1| (hypothetical protein VITISV_020777 [Vitis vinifera])

HSP 1 Score: 662.5 bits (1708), Expect = 5.9e-187
Identity = 317/466 (68.03%), Postives = 385/466 (82.62%), Query Frame = 1 

Query: 3    YDEAAEKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKA 62
            ++EA EKEEW  AM EE+ +IEKN TWE+V+LP  KN I +KWVF+TK+  DGSIQKHKA
Sbjct: 751  FEEAVEKEEWCSAMKEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKA 810

Query: 63   RLVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQEEV 122
            RLVAKGYAQQ G+D+++TFSPVARFETVRT+LALAA + W  YQFDVKSAFLNG+L EEV
Sbjct: 811  RLVAKGYAQQHGVDYDDTFSPVARFETVRTLLALAAHMHWCXYQFDVKSAFLNGELVEEV 870

Query: 123  YVAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYVKK 182
            YV+Q EGFI   KE  VY+L+KALYGLKQAPRAWYSKID YF + G+ RS++EP LY+K+
Sbjct: 871  YVSQXEGFIVPXKEEHVYRLKKALYGLKQAPRAWYSKIDSYFVENGFERSKSEPNLYLKR 930

Query: 183  EGKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDGI 242
            +GK+D +IICLYVDD+IY  SS+SL+++FK+ M  +FEMS++GLLH+FL LEV QVEDG+
Sbjct: 931  QGKNDLLIICLYVDDMIYMGSSSSLINEFKACMKKKFEMSBLGLLHFFLXLEVKQVEDGV 990

Query: 243  FISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDARRFRSLVGGLIYLTHT 302
            F+SQRKY  D++ KF MLNCK  AT MN NEKLQ +DG E  DARRF SLV GLIYLTHT
Sbjct: 991  FVSQRKYXVDLLKKFNMLNCKVVATXMNSNEKLQAEDGTERADARRFXSLVRGLIYLTHT 1050

Query: 303  RPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSDWA 362
            RPDIAFPV +IS+FM  PSK H GAAKR+LRYI GT ++GIWY     FKL G+TDSDWA
Sbjct: 1051 RPDIAFPVEVISRFMHCPSKQHLGAAKRLLRYIVGTYDFGIWYGHVQEFKLVGYTDSDWA 1110

Query: 363  GSLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLADL 422
            G L+DR+S S  +F+LGSGA+ WSSKKQA  ALS+SEAEY AATS+ACQA+WLRR+LAD+
Sbjct: 1111 GCLEDRKSTSGYMFSLGSGAVCWSSKKQAVTALSSSEAEYTAATSSACQAVWLRRILADI 1170

Query: 423  QQEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVAD 469
             QE +  T I+CDNKA I+MTKNPA+H RTKH+++R H+IRDLV +
Sbjct: 1171 NQEHEEPTVIYCDNKAAIAMTKNPAYHGRTKHVDIRVHFIRDLVVE 1216

[Close]
BLAST of CmoCh03G005400 vs. NCBI nr
Match: gi|1012354728|gb|KYP65915.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 621.3 bits (1601), Expect = 1.5e-174
Identity = 289/502 (57.57%), Postives = 390/502 (77.69%), Query Frame = 1 

Query: 3   YDEAAEKEEWKKAMVEEMQSIEKNGTWEMVDLPNGKNAINLKWVFKTKFAPDGSIQKHKA 62
           ++ A++++ W KAM EE++ IEKN TW++VD P  K+ I +KWV+KTK  PDG+IQKHKA
Sbjct: 180 FEAASKQQVWVKAMEEEIKMIEKNNTWDLVDYPKDKDIIGVKWVYKTKLNPDGTIQKHKA 239

Query: 63  RLVAKGYAQQQGIDFEETFSPVARFETVRTILALAAELRWPVYQFDVKSAFLNGDLQEEV 122
           RLVAKGY+QQ G+D+ ETF+PVAR +T+R ++ALAAE  W ++Q DVKSAFLNG LQEE+
Sbjct: 240 RLVAKGYSQQPGVDYNETFAPVARLDTIRALIALAAEKGWNIFQLDVKSAFLNGVLQEEI 299

Query: 123 YVAQPEGFIKKDKETKVYKLRKALYGLKQAPRAWYSKIDGYFQKKGYMRSENEPTLYVKK 182
           YV QP+GFI K  E KV +LRKALYGLKQAPRAWYS+ID YF   G+ RS++EPTLY+K 
Sbjct: 300 YVEQPQGFISKGNEDKVLRLRKALYGLKQAPRAWYSRIDQYFTDHGFRRSKSEPTLYIKT 359

Query: 183 EGKSDFIIICLYVDDIIYTSSSNSLLDKFKSQMMSEFEMSDMGLLHYFLGLEVYQVEDGI 242
           +G+ D +I+ LYVDD+IYT ++  ++ +FK  MM  FEM+D+GL++YFLG+EV Q + GI
Sbjct: 360 QGQYDTLIVSLYVDDLIYTGNNMKMMTEFKEDMMKTFEMTDLGLMNYFLGIEVSQKKKGI 419

Query: 243 FISQRKYAKDIMSKFGMLNCKPAATPMNINEKLQHDDGAEMTDARRFRSLVGGLIYLTHT 302
           FI Q+KY + ++ KF M  CK   TP+   EKLQ DDGA   DA R+RSL+G L+YLT T
Sbjct: 420 FICQKKYTEALLKKFKMSGCKTVTTPLVTKEKLQKDDGAPDADASRYRSLIGSLLYLTAT 479

Query: 303 RPDIAFPVGIISKFMQHPSKVHYGAAKRVLRYIAGTMEYGIWYSKSSNFKLYGFTDSDWA 362
           RPDI + V ++S+FMQ PS++H+GAAKR+LRY+ GT E+GIWY   +N  L G+TD D A
Sbjct: 480 RPDITYAVSLLSRFMQKPSQIHFGAAKRILRYLQGTKEFGIWYKTMTNSSLLGYTDCDLA 539

Query: 363 GSLDDRRSISANVFTLGSGAITWSSKKQATVALSTSEAEYVAATSAACQAIWLRRMLADL 422
           GS+DD +S S   F+LGSG  +W+SKK ATVA ST+EAEYVAA  A  QAIWLRR+LA++
Sbjct: 540 GSVDDMKSTSGYAFSLGSGIFSWASKKHATVAQSTAEAEYVAAAEATSQAIWLRRILAEM 599

Query: 423 QQEQKGTTKIFCDNKATISMTKNPAFHSRTKHIELRHHYIRDLVADEEIVLEYCNTDEQL 482
           +++Q G T I+CDNK+TI+MTKNP  HSRTKHI +++H+I+++   ++I +EYC T+EQ+
Sbjct: 600 REQQDGPTTIYCDNKSTIAMTKNPKHHSRTKHIAIKYHFIKEVETTKKIKMEYCKTEEQV 659

Query: 483 ADILTKALSKEKFCYFRRLLGI 505
           AD+ TKAL + +F  FR ++G+
Sbjct: 660 ADVFTKALPRTRFEQFRTMIGV 681

The following BLAST results are available for this feature:
BLAST of CmoCh03G005400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC2.7e-11542.49Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME3.4e-9437.70Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
M810_ARATH1.3e-4543.56Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
YCH4_YEAST5.7e-4132.25Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
YL14B_YEAST4.0e-2625.41Transposon Ty1-LR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
BLAST of CmoCh03G005400 vs. TrEMBL
Match NameE-valueIdentityDescription
Q6L3N8_SOLDE8.5e-20968.23Putative gag-pol polyprotein, identical OS=Solanum demissum GN=SDM1_42t00010 PE=... [more]
B6REL8_9BRAS8.5e-20165.75Integrase OS=Boechera divaricarpa GN=TnInt1 PE=4 SV=1[more]
A5AHH2_VITVI6.7e-19865.63Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032906 PE=4 SV=1[more]
A5AWP3_VITVI4.1e-18768.03Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020777 PE=4 SV=1[more]
A0A151TFT3_CAJCA1.0e-17457.57Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
BLAST of CmoCh03G005400 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.18.9e-10139.42 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.17.4e-4743.56ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
ATMG00820.11.0e-1950.56ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
ATMG00240.12.9e-1142.11ATMG00240.1 Gag-Pol-related retrotransposon family protein[more]
BLAST of CmoCh03G005400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|47824985|gb|AAT38758.1|1.2e-20868.23Putative gag-pol polyprotein, identical [Solanum demissum][more]
gi|158578541|gb|ABW74566.1|1.2e-20065.75integrase [Boechera divaricarpa][more]
gi|147771031|emb|CAN60238.1|9.7e-19865.63hypothetical protein VITISV_032906 [Vitis vinifera][more]
gi|147789988|emb|CAN71759.1|5.9e-18768.03hypothetical protein VITISV_020777 [Vitis vinifera][more]
gi|1012354728|gb|KYP65915.1|1.5e-17457.57Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015696 ammonium transport
biological_process GO:0015074 DNA integration
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G005400.1CmoCh03G005400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 26..270
score: 1.3E
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..429
score: 8.1E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 25..249
score: 8.0E-31coord: 279..458
score: 8.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G005400Wild cucumber (PI 183967)cmocpiB648
CmoCh03G005400Wild cucumber (PI 183967)cmocpiB681
CmoCh03G005400Cucumber (Chinese Long) v2cmocuB637
CmoCh03G005400Cucumber (Chinese Long) v2cmocuB670
CmoCh03G005400Melon (DHL92) v3.5.1cmomeB581
CmoCh03G005400Melon (DHL92) v3.5.1cmomeB600
CmoCh03G005400Watermelon (Charleston Gray)cmowcgB575
CmoCh03G005400Watermelon (Charleston Gray)cmowcgB576
CmoCh03G005400Watermelon (Charleston Gray)cmowcgB583
CmoCh03G005400Watermelon (97103) v1cmowmB614
CmoCh03G005400Watermelon (97103) v1cmowmB623
CmoCh03G005400Watermelon (97103) v1cmowmB640
CmoCh03G005400Cucurbita pepo (Zucchini)cmocpeB602
CmoCh03G005400Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G005400Cucurbita pepo (Zucchini)cmocpeB609
CmoCh03G005400Cucurbita pepo (Zucchini)cmocpeB631
CmoCh03G005400Cucurbita pepo (Zucchini)cmocpeB624
CmoCh03G005400Bottle gourd (USVL1VR-Ls)cmolsiB581
CmoCh03G005400Bottle gourd (USVL1VR-Ls)cmolsiB582
CmoCh03G005400Bottle gourd (USVL1VR-Ls)cmolsiB596
CmoCh03G005400Cucumber (Gy14) v2cgybcmoB947
CmoCh03G005400Cucumber (Gy14) v2cgybcmoB116
CmoCh03G005400Cucumber (Gy14) v2cgybcmoB231
CmoCh03G005400Cucumber (Gy14) v2cgybcmoB811
CmoCh03G005400Melon (DHL92) v3.6.1cmomedB667
CmoCh03G005400Melon (DHL92) v3.6.1cmomedB670
CmoCh03G005400Melon (DHL92) v3.6.1cmomedB686
CmoCh03G005400Silver-seed gourdcarcmoB0045
CmoCh03G005400Silver-seed gourdcarcmoB0886
CmoCh03G005400Silver-seed gourdcarcmoB1186
CmoCh03G005400Silver-seed gourdcarcmoB1246
CmoCh03G005400Silver-seed gourdcarcmoB1353
CmoCh03G005400Cucumber (Chinese Long) v3cmocucB0760
CmoCh03G005400Cucumber (Chinese Long) v3cmocucB0793
CmoCh03G005400Cucumber (Chinese Long) v3cmocucB0797
CmoCh03G005400Watermelon (97103) v2cmowmbB642
CmoCh03G005400Watermelon (97103) v2cmowmbB650
CmoCh03G005400Watermelon (97103) v2cmowmbB656
CmoCh03G005400Wax gourdcmowgoB0781
CmoCh03G005400Wax gourdcmowgoB0803
CmoCh03G005400Cucurbita moschata (Rifu)cmocmoB182
CmoCh03G005400Cucurbita moschata (Rifu)cmocmoB335
CmoCh03G005400Cucurbita moschata (Rifu)cmocmoB362
CmoCh03G005400Cucurbita moschata (Rifu)cmocmoB394
CmoCh03G005400Cucurbita moschata (Rifu)cmocmoB428
CmoCh03G005400Cucurbita moschata (Rifu)cmocmoB455
CmoCh03G005400Cucumber (Gy14) v1cgycmoB0042
CmoCh03G005400Cucumber (Gy14) v1cgycmoB0159
CmoCh03G005400Cucurbita maxima (Rimu)cmacmoB235
CmoCh03G005400Cucurbita maxima (Rimu)cmacmoB418
CmoCh03G005400Cucurbita maxima (Rimu)cmacmoB529
CmoCh03G005400Cucurbita maxima (Rimu)cmacmoB653
CmoCh03G005400Cucurbita maxima (Rimu)cmacmoB858