CmoCh03G004820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G004820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr03 : 5197259 .. 5201175 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACCCCGTAACTTTCAATTATTTCAAAATAACCCCTTCCTTCTAAATCCAATTATCCAAATATTTTTATTAAGATTTTTTTTTTCTTTCAGAAAACCTTATACATAGTTTATGTGCTGAAGTTGATAGTTTTGTGGGGGGTGTAAAACAATATATATACATATATATATATATATATCTTAAGGAGTTCGGTTGATCTATTCAAGCGAACCAAGATATTCGGAAGAAGATTTGTAAAGGTGAGCTCGTTACCCACACCTCTAGTCAGATGAATAGAAAACATTCGCTTTGAAACATTTTCAAAATCTCGCAAAACTACAAACATAATTTTTCTCTAAAAACTCAGGAGGTTCCACCAGAAAAAGTTTGGAATTCAATCGTATCGTCTTTTGAAGTTCCTAGGTTGAGAACCTAATTGAAAATCGAGCAACCCAATTCAACCTCCCTGATTTGGGTTATTTTTTTAATGAACTCGAATAGGTCACGATATGAACTAAGAGACATCAATCATAACATATGCTTCAATGAAGATGTGAAGAAAATATTGTTGAAATTATCAAAAGATATTTCAATTCATGCCACATTGAACAAGAATGAAGTTTCATGTTATAAATTTTGGGTAAATTACAATTTAGAGTTATTGTATTTCATTAATGTATTTTAACACTATTTATTTACTTTATGTTACATCTACATAATGGCTAATTATGGTCATTAAGCATGAATTAAAACATCTTTTGATAATTTTGACAACTTTTTTTTCACATCTTCATTGAAGCATATTGTATGATTGATGTCTCTTGGTTCATATCAACTTGGATTTCCTTACGGTATACATGGTTTTCTTAGGCACATTTTGTATACACGGTTTTCTTAGGCACATTTTGTTGAATTTGAATTGAATTTACATTAAAGAGTAGAGTCTTACCAAAAGCCTTGCAAGCAAAATAGCATCAACAACTGGTTCATCCATTATTCCTCGCAAACTAACATTTGATATTTGCAATTTCGAGAACAGCGACGAGCTTACCAGAACCTTCTCCCGCAACGATCAGAGTTTGACTTAGACAAGTTCATGATATTCAGAGCTTTTAGATGAAGAACGCTCTACTAATACAAGTCAAGCCACCTGCATGAGAGTAAGCATTTACTGTATTCATCAGGTTGAAGCTCAAATAAACGTTCTTGCAGTTCTGCGAATGATCAAGGAAAATTATGCATAAGGTAATGACATGTTCCTGAGAAAAATATATATCTACTACCGTACTTGTATGGATAGATCTTGTTCTCTCCCACTCCAAGCTTTGCTTTATTGGATTTAAACAAATAGTACTGAACTACTATGCTAATTCACAAAGAGGAACATAGCTGCGCCCATTACCCTTTAGAAATGGTTACATTTCCATCTTGGCTGCAGCAGAATCAGTAAAATTGAAACGGATTTAGTTCAATACAACTTCGAGGTGAGAGATGCAATACCTACACTCTTGAAAGACGAATTCGGGCTTGAGGTTTTTCCTGCAGGAGGAACATCAGAAAGCTCTAACATGTCATATACAAAGTTGAAAGGAATTATTGGAAGGATTAAAGTACTCCACTAGGAGGCCAGCAGATATACAGAAACTGTAAGGCACAAGGAAATCACTGCAAGACTGGCTGCAAAGAAATTAGTGATAGCAGAAGATAGGTGTTCAATACCCCCAGGATGATTTTGTGTTAAAGATATAATGATTATGTGCTATATCTTGTAGTTACCTTTTCTCTTTGCAAAGCAGTATATGTAATGTCCCTGTATGATATGATGTAAACACAAAATGAAAATCTTAATCATTGAATAATACACCCTTCATAAAGTAAAACAGCCCAAGCCCACTGTTAGTAGATATTGTCCACTTTGGCTCGTTGTGTATCGCCGTCAGCCTCACGATTTTAAAACACGTCTACAAGGGAGAGGTTTTTACACTCTTATAAGGAATGATTTGTTCCCCTCTCCAACTAATGTGGGATCTCACGTAAAGATATTGTTCCAAATTAGAGTTTCAAATGCCCACCTCACATGTTGGAACCTATACACTTAAGACCGTGTTTCGATCATTAGTGATTTCGAAGAAAAATACAGCCACGATAACTTTGGTTTGTCGATTCAGAAGTTGAAGGAAGCATGATTGAATATCAAATGAAAGAAAATCAGCATTGTATCAATCAGTTTAATTGTTAAGTGAGAAACCCCACTTCCTATATCCAAAATGAAACAATTTAATACAGAACCTGGATCGGTGAGAAAGAGTATGAAAAGAAAACCGAAACTAAAAACTTTCAATAGCCACAACTGATAGTGATGAGAAATGGGGTTGCTAGGAAAAAATAGTAGTAGACAAGCTTAAGCACCAAGAGAGGTATTGAAGTGGGTATACTCCTAAATTCCTCGAACTATAGTTCCCCCTACCTAGCACAAAGTTCTTACAGTCCGATTAAACAGAAGACCAATACCAAGAGTTTGCAGCAATATAATCAGTTAAAAGAACAGCATTTTTTCTAAACTATAAGATAATCATACCTCCTTGATATCAGGAACCCTGATTTCAATTCTTCTTGACTATTATGCCACTATTCTCAAATAACTAAAACAAAAGAACAATAAGCATAAAATTGGAAGCAAGAGTATCTATTGAAATCCCTCCAGAAAGCAGGTATTTCTTTACCTTTGAAAGCTGAATATGGTTCGGTCAGAGATAACATTATCTGATCATTGCTCAACTTTCCTAATGTTGCAACAGAAATTCAACAATTGATTACAACACACACTAACAAACTATTAGGTCACAGCCAATCCTTCTGCTGCAGCTTCAATGGCAAATAAACCTCCGACAGATACTGAAACCCGAATGAGCTCAATGCCTGAATCTCAGCCTTCTGCTTCGTCTTCACCATTAAAGAGAGCTCTTCAACCCAACCTGGATTCTTTTTTACAAAATCTTCCTCTAACAGATCTTTCCCAGTCTTAATATCCTGCTCTGTCATAGGTAACCTGCACTGCTCCGGTATATTATATTTATCCAAATCACTCGGCCTTATTCCTAGCCACTTGATATCAGGAGTAGTCAAATTAGCACTGTCATAAGACATATTCTTTGATCCACATCCATAGACAGATAGAATCTTCAACCCATATGGATCACTGTCTACAAGCGCAAGCACTGGAAGCTTCAGCTCCATTTTCATCTTCCTCAAGAACAATCTCGTGGCCACATCCGGTTGTCCCTTAGCGGTCACAATAATACATGGAAAGCGATTGTAAAACCTATCCTCAGCTAACCTAATATACGCGGCATCTTTCTCAACTAAGAGGATAAACAATGCATCACTCTGCATATCTCCAACTCTATCAATATTTGGCGGAATCGCTTTACCGCCCATACCCATTTTAGTGCAATCGATCATATCCCCATTGTCACTGAAAATGAGCCTTCCCACAACCACTCCTTTCTCCGCAGCAATCACATTGAGACTCGACCGAGTACAGCCGAGAATGCAAGAAACATCATCAAGCACAGAATCCGACTGAGTCTGATCCTGGAAGAGCTTTACATCCGTGTAGAACAGATCTCGCTTGGTCACATGGATGTTTTTTATGCAAAGTTGGTGGACAAGCTGAAGAATGCGAGTAGTAATGGTGGACTTCCGAACAGTGGAAATATTGGCGTAGGGGCGGATGGCGGTTTTGTCTTTCAAAACGATGCGATCGAGCTCCGGAACGTACAATTGGTTGGCCGCCGATCGAGAAGGAACATCAAATGCAAAACCATTGCCGGAAAGAATGGAACGAGCAATTTTGAGGATAAGATCTTCAATTGTGGACTGCACGGAAGAAAGCGAAAGATCGGTGACCTCGCGGCAGGAGGAGGAGAGGCCTAG

mRNA sequence

ATGTACCCCAAAACCTTATACATAGTTTATGTGCTGAAGTTGATAAAATGGTTACATTTCCATCTTGGCTGCAGCAGAATCAGTAAAATTGAAACGGATTTAGTTCAATACAACTTCGAGGTGAGAGATGCAATACCTACACTCTTGAAAGACGAATTCGGGCTTGAGGTTTTTCCTGCAGGAGGAACATCAGAAAGCTCTAACATGTCATATACAAAGTTGAAAGGAATTATTGGAAGGATTAAAGAGGCCAGCAGATATACAGAAACTGTAAGGCACAAGGAAATCACTGCAAGACTGGCTGCAAAGAAATTAGTGATAGCAGAAGATAGTTACCTTTTCTCTTTGCAAAGCAGTATATGTAATGTCCCTGTCACAGCCAATCCTTCTGCTGCAGCTTCAATGGCAAATAAACCTCCGACAGATACTGAAACCCGAATGAGCTCAATGCCTGAATCTCAGCCTTCTGCTTCGTCTTCACCATTAAAGAGAGCTCTTCAACCCAACCTGGATTCTTTTTTACAAAATCTTCCTCTAACAGATCTTTCCCATGCAATCGATCATATCCCCATTGTCACTGAAAATGAGCCTTCCCACAACCACTCCTTTCTCCGCAGCAATCACATTGAGACTCGACCGAGTACAGCCGAGAATGCAAGAAACATCATCAAGCACAGAATCCGACTGAGTCTGATCCTGGAAGAGCTTTACATCCGTGTAGAACAGATCTCGCTTGGTCACATGGATGTTTTTTATGCAAAGTTGGTGGACAAGCTGAAGAATGCGAGTAGTAATGGTGGACTTCCGAACAGTGGAAATATTGGCGTAGGGGCGGATGGCGGTTTTGTCTTTCAAAACGATGCGATCGAGCTCCGGAACGTACAATTGGTTGGCCGCCGATCGAGAAGGAACATCAAATGCAAAACCATTGCCGGAAAGAATGGAACGAGCAATTTTGAGGATAAGATCTTCAATTGTGGACTGCACGGAAGAAAGCGAAAGATCGGTGACCTCGCGGCAGGAGGAGGAGAGGCCTAG

Coding sequence (CDS)

ATGTACCCCAAAACCTTATACATAGTTTATGTGCTGAAGTTGATAAAATGGTTACATTTCCATCTTGGCTGCAGCAGAATCAGTAAAATTGAAACGGATTTAGTTCAATACAACTTCGAGGTGAGAGATGCAATACCTACACTCTTGAAAGACGAATTCGGGCTTGAGGTTTTTCCTGCAGGAGGAACATCAGAAAGCTCTAACATGTCATATACAAAGTTGAAAGGAATTATTGGAAGGATTAAAGAGGCCAGCAGATATACAGAAACTGTAAGGCACAAGGAAATCACTGCAAGACTGGCTGCAAAGAAATTAGTGATAGCAGAAGATAGTTACCTTTTCTCTTTGCAAAGCAGTATATGTAATGTCCCTGTCACAGCCAATCCTTCTGCTGCAGCTTCAATGGCAAATAAACCTCCGACAGATACTGAAACCCGAATGAGCTCAATGCCTGAATCTCAGCCTTCTGCTTCGTCTTCACCATTAAAGAGAGCTCTTCAACCCAACCTGGATTCTTTTTTACAAAATCTTCCTCTAACAGATCTTTCCCATGCAATCGATCATATCCCCATTGTCACTGAAAATGAGCCTTCCCACAACCACTCCTTTCTCCGCAGCAATCACATTGAGACTCGACCGAGTACAGCCGAGAATGCAAGAAACATCATCAAGCACAGAATCCGACTGAGTCTGATCCTGGAAGAGCTTTACATCCGTGTAGAACAGATCTCGCTTGGTCACATGGATGTTTTTTATGCAAAGTTGGTGGACAAGCTGAAGAATGCGAGTAGTAATGGTGGACTTCCGAACAGTGGAAATATTGGCGTAGGGGCGGATGGCGGTTTTGTCTTTCAAAACGATGCGATCGAGCTCCGGAACGTACAATTGGTTGGCCGCCGATCGAGAAGGAACATCAAATGCAAAACCATTGCCGGAAAGAATGGAACGAGCAATTTTGAGGATAAGATCTTCAATTGTGGACTGCACGGAAGAAAGCGAAAGATCGGTGACCTCGCGGCAGGAGGAGGAGAGGCCTAG

Homology

[Close]

BLAST of CmoCh03G004820 vs. TrEMBL
Match: A0A0A0KX28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293000 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 6   LYIVYVLKLIKWLHFHLGCS---------RISKIETDLVQYNFEVRDAIPTLLKDEFGLE 65
           + ++ VL++IK  ++ LG S          ++K+ETDLV  NFEVRDAI  LL+DE GLE
Sbjct: 729 IVVLAVLRMIKE-NYALGESVKDDIFIILEVNKVETDLVPQNFEVRDAITRLLQDELGLE 788

Query: 66  VFPAGGT--------SESSNMSY-TKLKGIIGRIKEASRYTETVRHKEITAR 100
           V P G T        SESS +S+ TKLKG +GR K  +R    V+  ++T +
Sbjct: 789 VLPTGPTIALDKVPNSESSKISHTTKLKGTMGRNKYFTRKPADVQRLKVTKK 839

[Close]

BLAST of CmoCh03G004820 vs. NCBI nr
Match: gi|659068895|ref|XP_008447192.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 1


Query: 6   LYIVYVLKLIKWLHFHLGCS---------RISKIETDLVQYNFEVRDAIPTLLKDEFGLE 65
           + ++ VL++IK  ++ LG S          ++K++TDL++ NFEVRDAI  LL+DE GLE
Sbjct: 731 IVVLAVLRMIKE-NYALGESVKDDIFIILEVNKVQTDLIRKNFEVRDAITKLLQDELGLE 790

Query: 66  VFPAGGT--------SESSNMSYTKLKGIIGRIKEASRYTETVRHKEITAR 100
           V P G T        SESSNMS+TKLKG +GR K  +R    V+  ++T +
Sbjct: 791 VLPTGPTIPLDKVPNSESSNMSHTKLKGTMGRNKYFTRKPADVQRLKVTKK 840

[Close]

BLAST of CmoCh03G004820 vs. NCBI nr
Match: gi|449448705|ref|XP_004142106.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 3.3e-08
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 6   LYIVYVLKLIKWLHFHLGCS---------RISKIETDLVQYNFEVRDAIPTLLKDEFGLE 65
           + ++ VL++IK  ++ LG S          ++K+ETDLV  NFEVRDAI  LL+DE GLE
Sbjct: 729 IVVLAVLRMIKE-NYALGESVKDDIFIILEVNKVETDLVPQNFEVRDAITRLLQDELGLE 788

Query: 66  VFPAGGT--------SESSNMSY-TKLKGIIGRIKEASRYTETVRHKEITAR 100
           V P G T        SESS +S+ TKLKG +GR K  +R    V+  ++T +
Sbjct: 789 VLPTGPTIALDKVPNSESSKISHTTKLKGTMGRNKYFTRKPADVQRLKVTKK 839

The following BLAST results are available for this feature:

BLAST of CmoCh03G004820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh03G004820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX28_CUCSA	2.3e-08	42.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293000 PE=4 SV=1	[more]

BLAST of CmoCh03G004820 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh03G004820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068895\|ref\|XP_008447192.1\|	2.1e-10	43.24	PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic ...	[more]
gi\|449448705\|ref\|XP_004142106.1\|	3.3e-08	42.86	PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G004820.1	CmoCh03G004820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G004820	Lsi01G013690	Bottle gourd (USVL1VR-Ls)	cmolsiB587
CmoCh03G004820	Cp4.1LG19g04140	Cucurbita pepo (Zucchini)	cmocpeB619
CmoCh03G004820	MELO3C003069.2	Melon (DHL92) v3.6.1	cmomedB696
CmoCh03G004820	CsaV3_4G024380	Cucumber (Chinese Long) v3	cmocucB0781
CmoCh03G004820	Cla97C04G075450	Watermelon (97103) v2	cmowmbB657
CmoCh03G004820	CsGy4G013600	Cucumber (Gy14) v2	cgybcmoB507

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh03G004820	CmoCh07G009900	Cucurbita moschata (Rifu)	cmocmoB460

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G004820	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G004820	Wild cucumber (PI 183967)	cmocpiB669
CmoCh03G004820	Cucumber (Chinese Long) v2	cmocuB657
CmoCh03G004820	Melon (DHL92) v3.5.1	cmomeB607
CmoCh03G004820	Watermelon (Charleston Gray)	cmowcgB584
CmoCh03G004820	Watermelon (97103) v1	cmowmB624
CmoCh03G004820	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G004820	Silver-seed gourd	carcmoB1246
CmoCh03G004820	Wax gourd	cmowgoB0786
CmoCh03G004820	Cucumber (Gy14) v1	cgycmoB0100