CmoCh03G004800 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G004800
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCmo_Chr03 : 5193657 .. 5196224 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCATTTGCCCAAATGACACGTCTGAAGGAATTAATGTTGGACTTAGATATCCATCCTAGTCATTATGGACGCATTTGCCCAAATGACACGTCTGAAGGAATTAATGTTGGACTTATTGGATCATTAGCAAAAAAGTGCGGATGCTTTATTTATCACCAAGTCGAGATGAATACTATAGAATACTATATGGTATCGACAGGAAATTCTTTGGCACTGAATCCAGGTATTCAAGAAGAACAGATTGTTCCAGCTCGATACCGTCAAGAATTCTTAACTATTGAATGGGAACAAGTTCATCTTCGAAGTATTTCTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTCATTCCTTTTATCGAACATAATGATGTGAATCGTGCTTTAATGAGGTCTAATATGCAACGTCAAGCAGTCCCGTTTTCTTGGTCCGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCACGTGGGTTCTCTCATCTAACCAATGTGATGGGATCTCACAACAGACGCGTTTTAAAATCGTGAGGCTCACGTTAATCTGCTTGACCTATTACACACACAAAAATGAATTTCATTCACCTGATTCTATACCTTTATCATCCAAATCTACAAAAGGGAGATAATCCATACTGTCCCAACTTTTCAGAGTAAAAAATTAACTGTTCCCTAAACAAAAACTATACTCTTTACTATCCTTCGTATCAATGTTGTTTTTCAAGTGGGCTACATAATTTCAGGGCGTTTTTGTTCCATAATCGCTACCTTATTGCAACCCAGCCTTAGATGGCAATGGATCAGCAGTGTGAGAATCCCTCTCGGCTTCATGAGCAACAAGCCTTGAGAATTTCTTGGATATCTGGATCATCCCCAGCTTCTTTATCCTAAGGTTCAAAAAAATTAAAAGATGATAAAAAGTTTGACAATTTGTAGCTTTACAGAAAAATTTGTAGACGTTGTTTTACCAGGAAAAGAAAACCATCGAGAATTATTGATCTGGACAATGGACATGCCTTGTGAATGTAAAAGAGATATCAAACAAGAACATGTATGGACAAGTGACATACCTTGTGAATGTAAGAGATGTTATTTTTACCGGGACCTGCAACTATGATGCCGCCTTGCTGCCTGAAAAATGGCACGAATATGCTTTCTTGTCAAGCACATTTGAGAGAGATTGAAAAAGAAATGAAGGTGTAACCGTCCAAGCCAATCGTTAGCAGATATTGTCCTCTTTGAACTTTTCCTTTTGGGTTTTCTCAAAAGGTTTTAAAAACACGTCTGTTAAGGAGAGGTTTTCACACCCTTATAAAGAATGCTTCGTTCTTCTCTCCAACTGATGTGGGATCTCATAATCCACTCCTCTTCGGAGCCCGTCTTTGCTGGCACTCGTTCCCCTCTCCAACCGCTTGCAGATATTGTCCTCTTTGGACTTTACCTTTCAGGCATCTCCTCAAGGTTTTAGAAACACGTCTGTTAAGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTTCTCTCTAACTGATGTGGGATCTCACAATTCACTCCTCTTTGGAGCCCAGCGTCCTTGCCGGCACTCGTTCCCCTCCCCAACCGCCAACAGATATTGTCCTTTTGGACTTTCCCTTTCGGGCTTCACCTCAATATTTTTAAAACGCATCTGCTAGGGAGAGGTTTCCACACCCTTACAAAAAAATGTTTCATTCCTCTCTCCAACCGATGTAGGATCTCACAATCCACCCCCTTCGAGGCCCAGCGTCCTCACTGGCACTCTTTCCCCTCTCCAATCAACGTAGGATCTCACGTAATGAATCTAAAATTGGTCGTTTATAAACCAATAGCCCAGTCCTCAGGATAATGAACAAAATTTCTTAGTCATGCCATGATGAGTTTCCAATGGAATGAGAAGACTAACTAAAGTGAATCAGTGATGTATTCAACCTGAGCCATTTTATCCAATGAATTTCAGATGTAAGTTAGTTATGTGATAACTGATAATGGGCAGTATATATCAAGATCAGTGGATCTTGCTGCTTGTTCATGTCAACTCAGGAAATTAGATCAGAACACTCATCCATGCTTTGCAATCTGAAACCAAAATGTTAGAGAGAGAGAGAATAATTGAGGTTTTTAGTTACCATCCCCCTCTAGACACAGTGTCCTTTTGAAAAGAGAGATTCCAATCCTGCCGATAGCCTTCCATGTACAGCTCAATAATCTTGAGACCCGCCTATAAATTCAGACAAGCAGCCATAGTAAGCACCTACAAGCTGATATTGCTGGTTATAACATTGCTATGATACTGAACTCCTAACATACTTTGGGAGTAAATGTGGTTGTAAACCCAGACACAAAATTTAGAGCCTCATATGATGAATGTGCAGGATCAGCATAAACTTCTGAAACAGAGAGTATGCTTCCATCAGTTCAAGTCAACAATCCAATTTTTACAGCCAGAACCTCTCCAGATTAAGTTTGGTTCTTAAGAACTACTCTTTTTAACCATTTTCAGGTCCTCAGCGGAAATATTATAAGATGGTAAAGGGACAACAGTAA

mRNA sequence

ATGGACGCATTTGCCCAAATGACACGTCTGAAGGAATTAATGTTGGACTTAGATATCCATCCTAGTCATTATGGACGCATTTGCCCAAATGACACGTCTGAAGGAATTAATGTTGGACTTATTGGATCATTAGCAAAAAAGTGCGGATGCTTTATTTATCACCAAGTCGAGATGAATACTATAGAATACTATATGGTATCGACAGGAAATTCTTTGGCACTGAATCCAGGTATTCAAGAAGAACAGATTGTTCCAGCTCGATACCGTCAAGAATTCTTAACTATTGAATGGGAACAAGTTCATCTTCGAAGTATTTCTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTCATTCCTTTTATCGAACATAATGATGTGAATCGTGCTTTAATGAGGTCTAATATGCAACGTCCTCAGCGGAAATATTATAAGATGGTAAAGGGACAACAGTAA

Coding sequence (CDS)

ATGGACGCATTTGCCCAAATGACACGTCTGAAGGAATTAATGTTGGACTTAGATATCCATCCTAGTCATTATGGACGCATTTGCCCAAATGACACGTCTGAAGGAATTAATGTTGGACTTATTGGATCATTAGCAAAAAAGTGCGGATGCTTTATTTATCACCAAGTCGAGATGAATACTATAGAATACTATATGGTATCGACAGGAAATTCTTTGGCACTGAATCCAGGTATTCAAGAAGAACAGATTGTTCCAGCTCGATACCGTCAAGAATTCTTAACTATTGAATGGGAACAAGTTCATCTTCGAAGTATTTCTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTCATTCCTTTTATCGAACATAATGATGTGAATCGTGCTTTAATGAGGTCTAATATGCAACGTCCTCAGCGGAAATATTATAAGATGGTAAAGGGACAACAGTAA
Homology
[Close]
BLAST of CmoCh03G004800 vs. Swiss-Prot
Match: RPOB_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=rpoB PE=3 SV=2)

HSP 1 Score: 191.4 bits (485), Expect = 7.0e-48
Identity = 100/139 (71.94%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETPFYEISERSKKVRMLYLSP 471

Query: 78  NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
           +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. Swiss-Prot
Match: RPOB_SILLA (DNA-directed RNA polymerase subunit beta OS=Silene latifolia GN=rpoB PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-46
Identity = 98/139 (70.50%), Postives = 102/139 (73.38%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA      +   +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGLLGSLESPFYKISERSAMVQMLFLSP 471

Query: 78  NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
           +  EYYMVSTGNSLALN GIQEEQ+VPARYRQEFLTI WEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SIDEYYMVSTGNSLALNQGIQEEQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. Swiss-Prot
Match: RPOB_DRIGR (DNA-directed RNA polymerase subunit beta OS=Drimys granadensis GN=rpoB PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-46
Identity = 96/139 (69.06%), Postives = 100/139 (71.94%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA          +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGYLGSIESPFYEISQRSKEVQTVYLSP 471

Query: 78  NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
           N  EYYMV+ GNSLALN GIQEEQ+VPARYRQEFLTI WEQ+HLRSI PFQYFSIGASLI
Sbjct: 472 NRDEYYMVAAGNSLALNQGIQEEQVVPARYRQEFLTIAWEQIHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. Swiss-Prot
Match: RPOB_CALFG (DNA-directed RNA polymerase subunit beta OS=Calycanthus floridus var. glaucus GN=rpoB PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.5e-46
Identity = 95/137 (69.34%), Postives = 101/137 (73.72%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-----------------NT 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                  + 
Sbjct: 404 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSIESPFYEISEKSKEIVYLPPSR 463

Query: 78  IEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLIPF 137
            EYYMV+ GNSLALN GIQEEQ+VPARYRQEFLTI WEQ+HLRSI PFQYFSIGASLIPF
Sbjct: 464 DEYYMVAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEQIHLRSIFPFQYFSIGASLIPF 523

[Close]
BLAST of CmoCh03G004800 vs. Swiss-Prot
Match: RPOB_CHLSC (DNA-directed RNA polymerase subunit beta OS=Chloranthus spicatus GN=rpoB PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.5e-46
Identity = 99/139 (71.22%), Postives = 107/139 (76.98%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLA--KKCGCF---------IYH---QVEMNTI-- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA   + G +         IY    +V+M  +  
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSIESPFYEIYERSKEVQMVYLSP 471

Query: 78  ---EYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
              EYYMV+ GNSLALN GIQEEQ+VPARYRQEFLTI WEQ+HLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVAAGNSLALNQGIQEEQVVPARYRQEFLTIAWEQIHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. TrEMBL
Match: A0A0S2IFB7_9ROSI (DNA-directed RNA polymerase subunit beta OS=Cucurbita andreana GN=rpoB PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.8e-46
Identity = 100/139 (71.94%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETPFYEISERSKKVRMLYLSP 471

Query: 78  NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
           +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. TrEMBL
Match: A0A0S2IF22_9ROSI (DNA-directed RNA polymerase subunit beta OS=Cucurbita ficifolia GN=rpoB PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.8e-46
Identity = 101/139 (72.66%), Postives = 105/139 (75.54%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM---------NTI------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E          N +       
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETPFYEISERSNKVRMLYLSP 471

Query: 78  ---EYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
              EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. TrEMBL
Match: X2F7M7_LAGSI (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria GN=rpoB PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.8e-46
Identity = 100/139 (71.94%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETPFYEISERSKKVRMLYLSP 471

Query: 78  NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
           +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. TrEMBL
Match: A0A0S2IEF4_9ROSI (DNA-directed RNA polymerase subunit beta OS=Cucurbita cordata GN=rpoB PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.8e-46
Identity = 100/139 (71.94%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETPFYEISERSKKVRMLYLSP 471

Query: 78  NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
           +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. TrEMBL
Match: A0A0S2IF40_9ROSI (DNA-directed RNA polymerase subunit beta OS=Cucurbita lundelliana GN=rpoB PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.8e-46
Identity = 100/139 (71.94%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETPFYEISERSKKVRMLYLSP 471

Query: 78  NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
           +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. TAIR10
Match: ATCG00190.1 (ATCG00190.1 RNA polymerase subunit beta)

HSP 1 Score: 178.3 bits (451), Expect = 3.5e-45
Identity = 93/141 (65.96%), Postives = 100/141 (70.92%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSL+       +  +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYELFEKSKKARIRMLFL 471

Query: 78  --NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGAS 137
             +  EYYM++ GNSLALN GIQEEQ VPARYRQEFLTI WE+VHLRSI PFQYFSIGAS
Sbjct: 472 SPSQDEYYMIAAGNSLALNRGIQEEQAVPARYRQEFLTIAWEEVHLRSIFPFQYFSIGAS 531

[Close]
BLAST of CmoCh03G004800 vs. NCBI nr
Match: gi|1002166155|ref|YP_009236272.1| (RNA polymerase beta subunit (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-45
Identity = 100/139 (71.94%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHATIGHWGSLESPFYEIYERSKKVRMLYLPP 471

Query: 78  NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
           +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. NCBI nr
Match: gi|952954786|gb|ALO22144.1| (RpoB (plastid) [Cucurbita ficifolia])

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-45
Identity = 101/139 (72.66%), Postives = 105/139 (75.54%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM---------NTI------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E          N +       
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETPFYEISERSNKVRMLYLSP 471

Query: 78  ---EYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
              EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. NCBI nr
Match: gi|68164795|ref|YP_247591.1| (RNA polymerase beta subunit [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-45
Identity = 100/139 (71.94%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETPFYEISERSKKVRMLYLSP 471

Query: 78  NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
           +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. NCBI nr
Match: gi|595646773|gb|AHM90210.1| (RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-45
Identity = 100/139 (71.94%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLETPFYEISERSKKVRMLYLSP 471

Query: 78  NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
           +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLI 531

[Close]
BLAST of CmoCh03G004800 vs. NCBI nr
Match: gi|346578183|ref|YP_004841775.1| (RNA polymerase beta subunit [Cucumis melo subsp. melo])

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-45
Identity = 100/139 (71.94%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 18  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM------------------- 77
           DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    
Sbjct: 412 DIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGDWGSLETPFYEISERLKKVRMLYLSP 471

Query: 78  NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSISPFQYFSIGASLI 137
           +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI PFQYFSIGASLI
Sbjct: 472 SRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLI 531

The following BLAST results are available for this feature:
BLAST of CmoCh03G004800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOB_CUCSA7.0e-4871.94DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=rpoB PE=3 SV=2[more]
RPOB_SILLA1.0e-4670.50DNA-directed RNA polymerase subunit beta OS=Silene latifolia GN=rpoB PE=3 SV=1[more]
RPOB_DRIGR3.8e-4669.06DNA-directed RNA polymerase subunit beta OS=Drimys granadensis GN=rpoB PE=3 SV=1[more]
RPOB_CALFG8.5e-4669.34DNA-directed RNA polymerase subunit beta OS=Calycanthus floridus var. glaucus GN... [more]
RPOB_CHLSC8.5e-4671.22DNA-directed RNA polymerase subunit beta OS=Chloranthus spicatus GN=rpoB PE=3 SV... [more]
BLAST of CmoCh03G004800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IFB7_9ROSI7.8e-4671.94DNA-directed RNA polymerase subunit beta OS=Cucurbita andreana GN=rpoB PE=3 SV=1[more]
A0A0S2IF22_9ROSI7.8e-4672.66DNA-directed RNA polymerase subunit beta OS=Cucurbita ficifolia GN=rpoB PE=3 SV=... [more]
X2F7M7_LAGSI7.8e-4671.94DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria GN=rpoB PE=3 SV=... [more]
A0A0S2IEF4_9ROSI7.8e-4671.94DNA-directed RNA polymerase subunit beta OS=Cucurbita cordata GN=rpoB PE=3 SV=1[more]
A0A0S2IF40_9ROSI7.8e-4671.94DNA-directed RNA polymerase subunit beta OS=Cucurbita lundelliana GN=rpoB PE=3 S... [more]
BLAST of CmoCh03G004800 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00190.13.5e-4565.96ATCG00190.1 RNA polymerase subunit beta[more]
BLAST of CmoCh03G004800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1002166155|ref|YP_009236272.1|1.1e-4571.94RNA polymerase beta subunit (chloroplast) [Gynostemma pentaphyllum][more]
gi|952954786|gb|ALO22144.1|1.1e-4572.66RpoB (plastid) [Cucurbita ficifolia][more]
gi|68164795|ref|YP_247591.1|1.1e-4571.94RNA polymerase beta subunit [Cucumis sativus][more]
gi|595646773|gb|AHM90210.1|1.1e-4571.94RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria][more]
gi|346578183|ref|YP_004841775.1|1.1e-4571.94RNA polymerase beta subunit [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007645RNA_pol_Rpb2_3
IPR015712DNA-dir_RNA_pol_su2
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO:0032549ribonucleoside binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
cellular_component GO:0009536 plastid
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G004800.1CmoCh03G004800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 18..48
score: 7.1
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 18..137
score: 2.3
NoneNo IPR availableGENE3DG3DSA:3.90.1100.10coord: 18..61
score: 8.7E-28coord: 109..138
score: 8.7
NoneNo IPR availablePANTHERPTHR20856:SF20DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 18..137
score: 2.3
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 18..137
score: 4.88

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G004800Cucumber (Gy14) v2cgybcmoB507
CmoCh03G004800Melon (DHL92) v3.6.1cmomedB696
CmoCh03G004800Silver-seed gourdcarcmoB1246
CmoCh03G004800Cucumber (Chinese Long) v3cmocucB0781
CmoCh03G004800Watermelon (97103) v2cmowmbB657
CmoCh03G004800Wax gourdcmowgoB0786
CmoCh03G004800Cucurbita moschata (Rifu)cmocmoB460
CmoCh03G004800Cucumber (Gy14) v1cgycmoB0100
CmoCh03G004800Cucurbita maxima (Rimu)cmacmoB653
CmoCh03G004800Wild cucumber (PI 183967)cmocpiB669
CmoCh03G004800Cucumber (Chinese Long) v2cmocuB657
CmoCh03G004800Melon (DHL92) v3.5.1cmomeB607
CmoCh03G004800Watermelon (Charleston Gray)cmowcgB584
CmoCh03G004800Watermelon (97103) v1cmowmB624
CmoCh03G004800Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G004800Cucurbita pepo (Zucchini)cmocpeB619
CmoCh03G004800Bottle gourd (USVL1VR-Ls)cmolsiB587