CmoCh03G003370 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G003370
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr03 : 4466878 .. 4468037 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAACCAAGAAACTATCTCTGCAGAAGATCATGGGTGGAGCTTTGTAATCAATGAGGTAGACCTTGATGTAACTGAATGCTTCATAAATAGTTACACAACCAAGAAAAAAGCTAAAGGTTTTGCTGAATATAAGTTATGATACCCTAATTATTGAGGTAATCTCTGTACCTGACCAGCAAGTGCTAAAGCATCAGTAAGCAAAGATATGGCCAACCATATTTGTACACAAATTTGATAACCGGCCATGGGTACAGTGCCCTCTCTAGCCGCCATGGATGTGGCTAGAGTCAGGGTTACGAGGACGGCTAATGTCCGGCCCATTAAGAGGCCACCTGAGACATACAACGGAAATCATAACTAAATGGGAAATTTAAGTAGGAGAAAAAATCATCAGAAGGGTTTTCGCAGAATTAGGAGGCATGAATTATTTGTATCTCTAGAAACTAAGAAATTATGGAATTACAGATTCCTCTCACACTCATTCGGGAACAAGTAAGGGAAGAGGAACGAGTGACTGAAACAAATTGATTAACAAAACTTCTTAATCAATCTGTCTGTCAGTGGAAGTAATACCAGATTTGAGATAGCGTGCAACTCTACCACCATCAATGCTGGAAAGAGTAAAAGATATTTCTCCGTTTAATCTCCACAGAAGAACGAATGCGATTAGATACCTGATAAAAAGAGCATTAGACCATCAGGAAAGAACAAGAACATCATTTCCTAATCTAATCTTAGGAACTCATCTCAAGCGCTTAAGCTAAATAAATAAGTTTACCACATTGTTGACGTACTCAGATATCACTGTCGCTATTGCAGCACCTCCAATGCCAAAACCACAAAAAAATATCAACAATGGATCCAGTACTGCATTAAGTAAATTGCCAGCAGCTGACACAACAAAACCAACTTTCATATCAATTAAAAGATCTTAATTAATTTTGAACAGTTTCCATATTCACATCACAGGAAGATAGTCGAGAACAATTATTGATATTACCAGTAGCATACAATGGCGTTTTTGTATCCTTAAATCCACGAAAGGTGCCTTGGGCAGCAAGTGCAATTACAATAGGGGGAGCACCAAATGCCCTCAGAGACAAAAATTGCTCCGCAGGTGCACGCATTGATGAACCCTACAAGATTTCAAGATAG

mRNA sequence

ATGCAAAACCAAGAAACTATCTCTGCAGAAGATCATGGGTGGAGCTTTGTAATCAATGAGGTAGACCTTGATGTAACTGAATGCTTCATAAATAGTTACACAACCAAGAAAAAAGCTAAAGATATCACTGTCGCTATTGCAGCACCTCCAATGCCAAAACCACAAAAAAATATCAACAATGGATCCAGTACTGCATTAATTTCCATATTCACATCACAGGAAGATAGTCGAGAACAATTATTGATATTACCAGTAGCATACAATGGCGTTTTTGTATCCTTAAATCCACGAAAGGTGCCTTGGGCAGCAAGTGCAATTACAATAGGGGGAGCACCAAATGCCCTCAGAGACAAAAATTGCTCCGCAGGTGCACGCATTGATGAACCCTACAAGATTTCAAGATAG

Coding sequence (CDS)

ATGCAAAACCAAGAAACTATCTCTGCAGAAGATCATGGGTGGAGCTTTGTAATCAATGAGGTAGACCTTGATGTAACTGAATGCTTCATAAATAGTTACACAACCAAGAAAAAAGCTAAAGATATCACTGTCGCTATTGCAGCACCTCCAATGCCAAAACCACAAAAAAATATCAACAATGGATCCAGTACTGCATTAATTTCCATATTCACATCACAGGAAGATAGTCGAGAACAATTATTGATATTACCAGTAGCATACAATGGCGTTTTTGTATCCTTAAATCCACGAAAGGTGCCTTGGGCAGCAAGTGCAATTACAATAGGGGGAGCACCAAATGCCCTCAGAGACAAAAATTGCTCCGCAGGTGCACGCATTGATGAACCCTACAAGATTTCAAGATAG
Homology
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BLAST of CmoCh03G003370 vs. TrEMBL
Match: A0A0A9DD01_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.6e-11
Identity = 46/88 (52.27%), Postives = 52/88 (59.09%), Query Frame = 1 

Query: 41  DITVAIAAPPMPKPQKNINNGSSTALISIFTSQEDSREQLLILPVAYNGVFVSLNPRKVP 100
           D+TVA AAP  P+P    N  SS      FT         L +P AY GVFVS++PR  P
Sbjct: 30  DVTVAKAAPLTPRPSGKTNIASSIT----FTR--------LPIPTAYKGVFVSMSPRNAP 89

Query: 101 WAASAITIGGAPNALRDKNCSAGARIDE 129
            AASA TIGGAP AL  +NCSAG RI E
Sbjct: 90  CAASATTIGGAPYALNVRNCSAGIRIGE 105

The following BLAST results are available for this feature:
BLAST of CmoCh03G003370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh03G003370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9DD01_ARUDO5.6e-1152.27Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of CmoCh03G003370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh03G003370 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G003370.1CmoCh03G003370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G003370CmaCh03G003250Cucurbita maxima (Rimu)cmacmoB653
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G003370Wild cucumber (PI 183967)cmocpiB657
CmoCh03G003370Wild cucumber (PI 183967)cmocpiB669
CmoCh03G003370Wild cucumber (PI 183967)cmocpiB682
CmoCh03G003370Cucumber (Chinese Long) v2cmocuB647
CmoCh03G003370Cucumber (Chinese Long) v2cmocuB657
CmoCh03G003370Cucumber (Chinese Long) v2cmocuB671
CmoCh03G003370Melon (DHL92) v3.5.1cmomeB589
CmoCh03G003370Melon (DHL92) v3.5.1cmomeB593
CmoCh03G003370Melon (DHL92) v3.5.1cmomeB599
CmoCh03G003370Watermelon (Charleston Gray)cmowcgB571
CmoCh03G003370Watermelon (Charleston Gray)cmowcgB572
CmoCh03G003370Watermelon (Charleston Gray)cmowcgB577
CmoCh03G003370Watermelon (Charleston Gray)cmowcgB584
CmoCh03G003370Watermelon (97103) v1cmowmB607
CmoCh03G003370Watermelon (97103) v1cmowmB624
CmoCh03G003370Watermelon (97103) v1cmowmB637
CmoCh03G003370Watermelon (97103) v1cmowmB642
CmoCh03G003370Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G003370Cucurbita pepo (Zucchini)cmocpeB634
CmoCh03G003370Cucurbita pepo (Zucchini)cmocpeB643
CmoCh03G003370Bottle gourd (USVL1VR-Ls)cmolsiB579
CmoCh03G003370Bottle gourd (USVL1VR-Ls)cmolsiB587
CmoCh03G003370Bottle gourd (USVL1VR-Ls)cmolsiB598
CmoCh03G003370Bottle gourd (USVL1VR-Ls)cmolsiB599
CmoCh03G003370Cucumber (Gy14) v2cgybcmoB379
CmoCh03G003370Cucumber (Gy14) v2cgybcmoB507
CmoCh03G003370Cucumber (Gy14) v2cgybcmoB812
CmoCh03G003370Melon (DHL92) v3.6.1cmomedB674
CmoCh03G003370Melon (DHL92) v3.6.1cmomedB678
CmoCh03G003370Melon (DHL92) v3.6.1cmomedB685
CmoCh03G003370Silver-seed gourdcarcmoB0221
CmoCh03G003370Silver-seed gourdcarcmoB0363
CmoCh03G003370Silver-seed gourdcarcmoB0753
CmoCh03G003370Silver-seed gourdcarcmoB1340
CmoCh03G003370Cucumber (Chinese Long) v3cmocucB0768
CmoCh03G003370Cucumber (Chinese Long) v3cmocucB0777
CmoCh03G003370Cucumber (Chinese Long) v3cmocucB0781
CmoCh03G003370Cucumber (Chinese Long) v3cmocucB0795
CmoCh03G003370Watermelon (97103) v2cmowmbB651
CmoCh03G003370Watermelon (97103) v2cmowmbB646
CmoCh03G003370Watermelon (97103) v2cmowmbB648
CmoCh03G003370Watermelon (97103) v2cmowmbB657
CmoCh03G003370Wax gourdcmowgoB0766
CmoCh03G003370Wax gourdcmowgoB0773
CmoCh03G003370Wax gourdcmowgoB0780
CmoCh03G003370Wax gourdcmowgoB0791
CmoCh03G003370Cucurbita moschata (Rifu)cmocmoB216
CmoCh03G003370Cucurbita moschata (Rifu)cmocmoB253
CmoCh03G003370Cucurbita moschata (Rifu)cmocmoB427
CmoCh03G003370Cucurbita moschata (Rifu)cmocmoB449
CmoCh03G003370Cucurbita moschata (Rifu)cmocmoB453
CmoCh03G003370Cucumber (Gy14) v1cgycmoB0349
CmoCh03G003370Cucumber (Gy14) v1cgycmoB0370
CmoCh03G003370Cucumber (Gy14) v1cgycmoB0504
CmoCh03G003370Cucurbita maxima (Rimu)cmacmoB262
CmoCh03G003370Cucurbita maxima (Rimu)cmacmoB300
CmoCh03G003370Cucurbita maxima (Rimu)cmacmoB724
CmoCh03G003370Cucurbita maxima (Rimu)cmacmoB826