CmoCh03G002330 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G002330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic (1.6.5.-)
Location	Cmo_Chr03 : 3601989 .. 3602352 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCTATGGTAACTGGGTTCATGAATTATGGTCAACAAACAGTACGAGCTATAAGGTACATTGGTCAGGGTTTCATGATTACTTTATCCCATGCAAATCGTTTGCCTGTAACTATTCAATATCCTTACGAAAAATTAATCGCATCGGAGCGTTTCCACGGTTGAGTCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTATAGATCTCCCCGTTGTTGATTGAAAATTGGAAACGGATATTCGAAAGAAACGATTGCTTAATTACAGTATTGATTTCGAGATCTGTATATTTTGTAGTAACTGCATTGAATATTGTCAAACAAATTATTTATCAATGA

mRNA sequence

ATGATCCCTATGGTAACTGGGTTCATGAATTATGGTCAACAAACAGTACGAGCTATAAGGTACATTGGTCAGGGTTTCATGATTACTTTATCCCATGCAAATCGTTTGCCTATCTCCCCGTTGTTGATTGAAAATTGGAAACGGATATTCGAAAGAAACGATTGCTTAATTACAGTATTGATTTCGAGATCTGTATATTTTGTAGTAACTGCATTGAATATTGTCAAACAAATTATTTATCAATGA

Coding sequence (CDS)

ATGATCCCTATGGTAACTGGGTTCATGAATTATGGTCAACAAACAGTACGAGCTATAAGGTACATTGGTCAGGGTTTCATGATTACTTTATCCCATGCAAATCGTTTGCCTATCTCCCCGTTGTTGATTGAAAATTGGAAACGGATATTCGAAAGAAACGATTGCTTAATTACAGTATTGATTTCGAGATCTGTATATTTTGTAGTAACTGCATTGAATATTGTCAAACAAATTATTTATCAATGA

Homology

[Close]

BLAST of CmoCh03G002330 vs. Swiss-Prot
Match: NDHI_EUCGG (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhI PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. Swiss-Prot
Match: NDHI_OENEH (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhI PE=3 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. Swiss-Prot
Match: NDHI_PLAOC (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Platanus occidentalis GN=ndhI PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M+PMVTGFMNYGQQTVRA RYIGQ FMITLSHANRLP++
Sbjct: 1  MLPMVTGFMNYGQQTVRAARYIGQSFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. Swiss-Prot
Match: NDHI_CUCSA (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Cucumis sativus GN=ndhI PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGF+ITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFVITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. Swiss-Prot
Match: NDHI_GOSHI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium hirsutum GN=ndhI PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-13
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYG QTVRA RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGHQTVRAARYIGQGFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. TrEMBL
Match: A0A0D2MAX1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G166200 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-13
Identity = 51/120 (42.50%), Postives = 62/120 (51.67%), Query Frame = 1


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS--------------------- 60
           M PMVT F+NYG Q VRA RY+GQGFMITLSH N LP++                     
Sbjct: 1   MFPMVTRFINYGHQIVRAARYVGQGFMITLSHVNCLPVTIQYPYENLITSEHFRRRIHFE 60

Query: 61  ----------------PLLIENWK--RIFERNDCLITVLISRSVYFVVTALNIVKQIIYQ 82
                            L +  WK  R  ++N CLITVLIS+ V+FVV  L+IV+Q  YQ
Sbjct: 61  IDKCIACEVCVRVCPIDLPVVGWKFERDIQKNYCLITVLISKFVHFVVIVLSIVQQFFYQ 120

[Close]

BLAST of CmoCh03G002330 vs. TrEMBL
Match: A0A0K1NPW7_9MYRT (NADH-quinone oxidoreductase subunit I OS=Eugenia uniflora GN=ndhI PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-12
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA+RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAVRYIGQGFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. TrEMBL
Match: T1QPC4_EUCER (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus erythrocorys GN=ndhI PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGFMITLSHANRLPI+
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLPIT 39

[Close]

BLAST of CmoCh03G002330 vs. TrEMBL
Match: T1QHV7_EUCVE (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus verrucata GN=ndhI PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-12
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. TrEMBL
Match: A0A0N6WC04_CORYI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Corymbia citriodora subsp. citriodora GN=ndhI PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-12
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. TAIR10
Match: ATCG01090.1 (ATCG01090.1 NADPH dehydrogenases)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-14
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M+PM+TGFMNYGQQT+RA RYIGQGFMITLSH NRLP++
Sbjct: 1  MLPMITGFMNYGQQTLRAARYIGQGFMITLSHTNRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. NCBI nr
Match: gi|763747323|gb|KJB14762.1| (hypothetical protein B456_002G166200 [Gossypium raimondii])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 51/120 (42.50%), Postives = 62/120 (51.67%), Query Frame = 1


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS--------------------- 60
           M PMVT F+NYG Q VRA RY+GQGFMITLSH N LP++                     
Sbjct: 1   MFPMVTRFINYGHQIVRAARYVGQGFMITLSHVNCLPVTIQYPYENLITSEHFRRRIHFE 60

Query: 61  ----------------PLLIENWK--RIFERNDCLITVLISRSVYFVVTALNIVKQIIYQ 82
                            L +  WK  R  ++N CLITVLIS+ V+FVV  L+IV+Q  YQ
Sbjct: 61  IDKCIACEVCVRVCPIDLPVVGWKFERDIQKNYCLITVLISKFVHFVVIVLSIVQQFFYQ 120

[Close]

BLAST of CmoCh03G002330 vs. NCBI nr
Match: gi|918021140|ref|YP_009163533.1| (NADH-plastoquinone oxidoreductase subunit I (plastid) [Eugenia uniflora])

HSP 1 Score: 79.0 bits (193), Expect = 4.4e-12
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA+RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAVRYIGQGFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. NCBI nr
Match: gi|545718707|ref|YP_008577547.1| (NADH dehydrogenase subunit I (chloroplast) [Eucalyptus erythrocorys])

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGFMITLSHANRLPI+
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLPIT 39

[Close]

BLAST of CmoCh03G002330 vs. NCBI nr
Match: gi|984911416|gb|AMC31145.1| (NADH dehydrogenase subunit I (chloroplast) [Oenothera suffrutescens])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. NCBI nr
Match: gi|782493188|gb|AJZ71647.1| (NADH-plastoquinone oxidoreductase subunit I (chloroplast) [Corymbia citriodora subsp. variegata])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLPVT 39

The following BLAST results are available for this feature:

BLAST of CmoCh03G002330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHI_EUCGG	7.9e-14	89.74	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus globulus s...	[more]
NDHI_OENEH	7.9e-14	89.74	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Oenothera elata subsp...	[more]
NDHI_PLAOC	2.3e-13	87.18	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Platanus occidentalis...	[more]
NDHI_CUCSA	2.3e-13	87.18	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Cucumis sativus GN=nd...	[more]
NDHI_GOSHI	3.0e-13	87.18	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium hirsutum GN...	[more]

BLAST of CmoCh03G002330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2MAX1_GOSRA	8.0e-13	42.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G166200 PE=4 SV=1	[more]
A0A0K1NPW7_9MYRT	3.0e-12	89.74	NADH-quinone oxidoreductase subunit I OS=Eugenia uniflora GN=ndhI PE=3 SV=1	[more]
T1QPC4_EUCER	6.8e-12	92.31	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus erythrocor...	[more]
T1QHV7_EUCVE	8.8e-12	89.74	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus verrucata ...	[more]
A0A0N6WC04_CORYI	8.8e-12	89.74	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Corymbia citriodora s...	[more]

BLAST of CmoCh03G002330 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01090.1	2.2e-14	82.05	ATCG01090.1 NADPH dehydrogenases	[more]

BLAST of CmoCh03G002330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763747323\|gb\|KJB14762.1\|	1.1e-12	42.50	hypothetical protein B456_002G166200 [Gossypium raimondii]	[more]
gi\|918021140\|ref\|YP_009163533.1\|	4.4e-12	89.74	NADH-plastoquinone oxidoreductase subunit I (plastid) [Eugenia uniflora]	[more]
gi\|545718707\|ref\|YP_008577547.1\|	9.7e-12	92.31	NADH dehydrogenase subunit I (chloroplast) [Eucalyptus erythrocorys]	[more]
gi\|984911416\|gb\|AMC31145.1\|	1.3e-11	89.74	NADH dehydrogenase subunit I (chloroplast) [Oenothera suffrutescens]	[more]
gi\|782493188\|gb\|AJZ71647.1\|	1.3e-11	89.74	NADH-plastoquinone oxidoreductase subunit I (chloroplast) [Corymbia citriodora s...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G002330.1	CmoCh03G002330.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G002330	Cucumber (Chinese Long) v3	cmocucB0774
CmoCh03G002330	Watermelon (97103) v2	cmowmbB665
CmoCh03G002330	Wax gourd	cmowgoB0791
CmoCh03G002330	Cucurbita moschata (Rifu)	cmocmoB456
CmoCh03G002330	Cucumber (Gy14) v1	cgycmoB0917
CmoCh03G002330	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G002330	Cucurbita maxima (Rimu)	cmacmoB859
CmoCh03G002330	Wild cucumber (PI 183967)	cmocpiB663
CmoCh03G002330	Cucumber (Chinese Long) v2	cmocuB652
CmoCh03G002330	Melon (DHL92) v3.5.1	cmomeB599
CmoCh03G002330	Watermelon (Charleston Gray)	cmowcgB592
CmoCh03G002330	Watermelon (97103) v1	cmowmB635
CmoCh03G002330	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G002330	Cucurbita pepo (Zucchini)	cmocpeB625
CmoCh03G002330	Bottle gourd (USVL1VR-Ls)	cmolsiB587
CmoCh03G002330	Cucumber (Gy14) v2	cgybcmoB501
CmoCh03G002330	Melon (DHL92) v3.6.1	cmomedB685
CmoCh03G002330	Silver-seed gourd	carcmoB0789
CmoCh03G002330	Silver-seed gourd	carcmoB1381