CmoCh03G001620 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G001620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Retrotransposon protein, putative, Ty1-copia subclass) (Reverse transcriptase (RNA-dependent DNA polymerase), putative)
Location	Cmo_Chr03 : 2284712 .. 2294546 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACGGCTGCCCATGTGATCAACAAGCTTCCCCAGCCAAGGCTAGGGTTTGTCTCACCATTTGAGATACTATGGGACATGAAACCTACAGTTAGCTACTTCCGAGTATTTGATTGTGTTTGCTATGTATTTGTGCCTGACCATCTACGTAGCAAGTTTGACAAGAAAGCAGTCAAGTGCATATTTGTCGGATATGATAATCAAAGAAAAGGGTGGAAGTGTTGTGATCCTACAAGTGAAAAATGCTATACATCAAGAGATGTAGTTTTCGATGAAGCATCTACATGGTGGTCCTCGGAGAAGAAGGTTCTACCAGATCTAAATAACATCGAAGAAATTCTACAATAGAAGATGGGGGAGCAAATTACACACACTCAGCCAAATGTTGATGTATCTAAAGACTCAGTGACATTGATGTCGATGAGGAAGAAATGATTCAATCAAGCGAATCTGTTGAAAAGGAAACGTCACATCAACAACTTAGGCGATAAAAAAGAATCCAAAAGCCCAATCTTAAGTATGTCAATGCAGTTATTGTAGAAGACGGAGTTCATGAGCCAGAGACATATGAAGAAGCATCAAAAAACTCAGCTAGGCAGAAAGTAATGGAGGAAGAAACTATAGCCCTAGAACATAATCAAATTTGGGAACTAGTACCAAGACTAGGAGATGTCAAACCCATCTCTTGCAAGTGGGTCTACAAAATAAAGCGTCGACCGGATGGATCAATCAAGAGGTACAAGGCTCGACTTGTAGCTCGAGGATTTTCTCAACAATATGCATTAGACTATGATGAAACATTCAGTCCAGTGGCAAAGATCACTACCATACGAGTTCTGCTAGCACTCGCAGCAAGTAAAGATTAGAAACTGTGGCAGTTGGACGTGAAGAATGCTTTCTTGCACGGAGAGTTAAACAGGGAGATCTACATGAACCAACCAAAAGGATTTGAGAGTGCAACTAATCCTAATCACGTATGCAAGCTTAGAATAGCTCTTTATGGGTTGAAGCAAGCACCAAGAGCTTGGTATGGTAAGATTGCTGAATTTCTTACCCAAAGTGGTTATTCAGTTGCACATGCAGACTCAAGCTTGTTTATCAAAGAAAGAGAAGGAAAATTGGCAATTGTATTGGTGTATGTGGACGATTTGATTATCACCTGAGATGAAGAAAAAGAAATTCATCAAACAAGAGAAAATTTATCAGTACGTTTCCAAATGAAAGAGCTAAGAGAGCTTAAACACTTTTTAGGCCTAAAAGTTGATCGCACAGATGAAGGATTGTTTCTCTACCAACAAAAGTATACAAGAGATATGCTTCAGAAGTTTAACATGTTAGAATGCAAACAAGCTTCAACACCGATAGAGACAAATGTCAAGATCTGTGCACATGAAGGCAAAAGTTGAACGATGAAACGACATACCGACAACTGGTAGGAAGTCTTATCTACCTAACTTTAACTCGACCTGATATTTCTTATGCAGTTGGAGTCATGAATCGGTACATGTAAAATCCAAAGAAGCCTCATCTGGATGCGGCTCGACGGATCTTGAGATATGTCGAAGGTACAATCAACTATGGTCTTCTGTACAAAAGAAGCAAAGACTGCAAGCTAGTTGGATACTGTGATGCTGATTATGCAGGAGACCACGATACTCGAAGATCAACCACTGGGTATGTGTTCAAGTTGGGTTCGGGAACAATTTCTTGGTGTAGCAAAAGACAACCAACAGTATCGTTGTCAACTATAAAAGCAGAGTATAGAGCAGCAGCTGAGCAGCTCAGGAAAGTACGTGGTTGAAACTCTTGATGGAAGATTTACACTAGAGAATTGACTATCCAATATCACTTCATTGCGACAACCAATCTGCGATTCGCCTAGCAGAAAATCCGGTGTTTCATGCTAGAACAAAGCATGTAGAGGTACACTACCATTTCATTAGAGAGAAAGTCCTGAAGGAAGAAATCGAGATGCAACAGATCAAGACAGATGATCAAGTGGCAGACTTGTTTACAAAAGGGCTGAATACTGGCAAATATGAGAGTCTTCGCTGTCAGCTCAACATGGTGCAGCGAAGATTAATGCTGAGGGGGAGTCTTAAAATATTATCACTAGCCCAATAGGTTAAGCCCAACCATTGTATGAGTAATTATATTTATGATTTAGGATTTTAGGAATAAAGGTGAGAAATGATTTAGGGATTTTAGGAATAAAGTTTAGGAAAATAATTTAGGTATTTTAGGAAAAACATTGAGAAATTTTAGGAATAGATTGACTACCATCTAGTATAAATAACTCCTCACCCTACTTAGTTCATCATCCCAAGAAATACCAAGCAACACAAAGTTGTGGTTTCTACAAAGTGTCTTGTACTCTCTTCTCGATTGGTCTTAATAAAGTGTGCGAGTGTTTCCCATAGAGAGTTGTGTTCAACACGCTCTACATCTATAAAGAATGTTAGCTACCACTCAAGGATAATGGACCGAGATTTTCAAACTCAAAAAACTCAAGAAATTCCTAAACTTCCCACGGTACAACATGTTCATGACTTAGACTACATCGCTTGGAATGTAACAAACCTTGGATGTAGGTATTCAGACTATGCCATTTGAAACGCATGAAACCTTAGGCATATGTTTTCATATTGTATCGCAAGGAATGCATGAAGCCTTTGATGCGGGTTCAGACTACATCACTTGTACAACACAGGTTGTCAAGTTCATGCCTTGTACAGTAAATCCGAGGGGAGTGTTTGGACAAGAATAGAACAAGAACATAGAAAGTAACCAAGAATAAGACAACGATTAAGAAATAGAACATGAATCAAGATCCAAGTTTTAAAGACAAGAACTCAGAACCACAGTACTAAAGCCCTTAGACCTTAGAATTCCAAGGAACTGCCCTTAGATCTCTGATCCTAAGGATCAAGGTTATCAAAATAGATCATGATAAGAACTCACAAGTCAAGAACATATCAAAAGGGCCCAAATACTTGCAACAAGATGAGAACGAGTGTGGTACCCTAGCATTATCAAGGACACAATTAAGAGCCTACAAGTAGACTACTTATTGAGTCTTTGTACTCCATGTTTTTCAGGTAAATAAAAATCCGGTCGAGGTTAGGAGCGGACTTTGGAGCAGGTACCATAGACAAGCCTCACTCCTCAACCCTTTTATTTTAAATATTTTGTGTGTTTAACTACTTTGGCATAAACTCTATTTTGATATAATATAAATATATTGTATATTATGTTTTAAATTCTCTTTGTTTGTTTCGCGAAACATTTGGCCATCTTTTTACATCATCGAGTCAACCTAAAAGTTGAGGTCAGGTCCATGCCTTATAGGTCGCATATGGATTTGGGCTACGGGTAGCATATGGGTTTAGGTCGATAAGGCGGGTTTAGGCAGGTTCGGCTAGTAATGGGTTTTTGGTCGTGGGTGTTTGGACCTTGGACCAAGTAAAGACACGTAGACCGATCGAGGTTTTGGGCTAGGCTTGAGCAAAATTTCAAGGATAGCCGTCCGAAGCTAACTTCGGGTCGGGTCTATAGTCTACGGAGGCTCAAGATCGGAGTTTTTGTTCGGATTCCAAGCCTCATAAATGAGATTGTTTCAAAAATCAAAGTTGGTTAATTATTAGTTGATTAACAATCCAATGATACTTTATAAACTATTATATTACCTTTAACAATTCAAACACTACGAATAATAAGAGAAAGTTGAAGGAGAAATCGTTACGGATCGAAAAGAAGAAAAAGACTAATTGCGTATACGTTAAGAATACAAACTTAAAATTATTATTATTCGTTAGAAGAAAACAAAAGGTTAATGATTTATTTTTGCCTTTTTGCCTTTTTGCCCCCACATAAATTTTATTTTCCTTTCTTCTCCCAAAAGAAACAACAAATGACTAAAATTATGAACTCGAGACTTGATTAAATAAACTTTTGATGAAGAAATTTGGGGAAAAGGAGATGATGAGTCTCACTTTTTTGAAATTTGGCATCCTCAAAAGAAAATTGTGTTCTACATTCATCCTCTATTAAAAAAGAAAAGGAGAGAGAATATGAGAAACAAAACAAAAGCCAATCGTCCTATCCCCATTCCATGTCCAAATTCGTATCACATTCATATATATCCTTTCTCATATAAAATGAAGTGAATCGACTTTATAGTTTTGAAAGTATAACGGCTTAGGCCTAAGCCTATCACTCGCAGATATTATCCTATTTGGACTTTTCCTTTCGAGCTTCAACTCAAGACTTTAAAACGCGTATGTTAGGGAAAAGTTTCCACACCCTTATAAAAGATATTTCGTTTTCCTCCCCAACCAATGTGGGATATGACCGAATGACTTTTATTTGTCTATAGAATTTGAAAATGAATTCAATAGTTCCTTTTGAAAGATAAAATTATTGTAAAGAAATGACGAGAAAACTATGAGAAAAAAAAGTTTGAAAAGATAGAGCATTTGAAGCATTCCAATGAAAAGTTCATTTGCCTCAAAAATGTCATTTTCAGCAACACGTATATTCCTCCTTTGATTTATAATCGACTTAATCTAAACTCAAACAAACCAATTTTCATAGTTGTACGACCTTATTTTTCTCTATCATAATACATATATTGTTACATGCATGGCATGACGGTTAAGTGTGAAAATATTCATTTAAAATATTTTATCAACGATGTCATGACTTAAACGTTCGTTATAATTTTTTTAAAACAATATAGCATAAAATAAATAACATGAAATTTTAAATCATATAAAAAAAGGAATAAAACTATACTATGATCTAATTTAAGGGCTACAAACAACATGAATACATCTAGCTTAGCATTCATGCTCATCAAATTCTTCTTCTAATTTAGTGGCCTCAATATTATTAACTATTGTTATTAGAGTGTAAGGACCTTTACTAACATTTAACTACAAATGAATAATCAATCGATTGCAAATAAATTTTAATTCTAGCTCTCCAATATGTATAATTTGTTCTATCAAAATAAGGGGCTAGAGGTTGATTGTCCTTTCACTATTTTTAATACGTAGGTTTGTCATCAGCTCAAACAATAAAGTTTATATAAAAAATCTATAAGAGCAACCCGCTCTGATACCAATTGTTGGATCGGTGTGGCAACTCTAGAGGGAGGTAAATAGGTTTTAACGATAAAAGTATTTAAGCGTGATTATTTATCTAATTATGAAACTTTTTACAAATAAGTAAATATGATAATTACTATAACAAAATAATTCAAGTCAAAACAATAATCAACTAGAACATGCAATAAATCACCATAATAATTTTGAAATTAAATAGGAAAGAGTTAGAAAATATGACACGTAATTTTATAGTGGTTCGGTCAACTCGATCGATTCCACTCCCCAAACGTCTTTTGGAAATTTGAATAAAGAACCTTCTCGACTCTTTCCACAGATCAGAGCCAAACCGCTATGCCGCTCTTTTTACGAGTTCAAGAGCAAACTCAATCATTTCCACGACGCAGGATCAAACCGATACAAGTATTTGAATTTGATAGTAGCACACCACAACTCTCTTAAAGAGTAGATTTATAATTTGGAGCACTCACAACACAATAAAAAATCTCTCTCAAGAATAAGATAAATAAAAATAAAATTGAAAGCTCGTAGAGAACAACAATGGAGCTTTAGAAAATTGAAGATGAAGAGTCATGTAAGTTGTGTGTAGAAAATATAAGAAAGTAGATGGATTTAAATAGAGAAGAAAGTGGCAAAAGGTAGGAATTAATATTGACCATTGAAAGAGAAATGGAAGGTGGAGATTAAAAATAAATAATAAAAAAGTTTCTAAATTTATTATTATTATTTTTTAAATATAATAATAATAATATAAAAATAATAAAAACCTTTGGAGTAATAATAATATAATTAATAATAAAGAGTAATGTGAGTAACGGTTCAGTTAAAATTTTAAAATTTATTATAAATATAATAATATAATAATAATAAAAATGACATAAGTAACTACCAAAATTTTAAAATATAATAATGTAATAATGTAATATATTAATAATAACGTGAGTAACGGTTATATTCAAATTTATATTATGTATAAATAATTTTATTTAGGAATATAATAATAAGAAAAACTTCCCACTTTGTTACTCTTCCAAAATTATAAATGTCATACTTTGATTTGTCCATCATTTTGATTTAGCTGCACATCGGGTATGTTGTCTCGACTGTAATTTCTTCGTTTTAGCTCTGATTTAAGTGATTGAAAAGTCATTGAAATCGTTATTCCCGACCTTATACTGTGTACAGTTCAAAATACTGAAAATTGTTAATAATTAGAAGTATGTTTGTTATCATCAAAACATCAATCAATTAATTGATTAAAATTAATTAAAATGAGATTAATGGTCAAAAAGCCAACGATCTTCAACTTACATGACTTCATTGACTCAGCTCGACAGCTGCTCGACTCAAAAAACACATTATTTGGCTCGGGTTCCTTACATCTTTTTACCCTTTCGGAGCTGACTTTGACCTAATTAAGCCAATTGAGGTCAGTATAACATCATATTTCCAAGTTCAAGTTGATTTGGGCTAAAAATGTGAATGGTAACAAAACGAGATGGATGTTCTAATAAGAAACGACAACCGACGATACTTGGAACAACTTCGAAGGACAGAATTCAAATGTACTCGAGTTTAGGAAGAACGTCGGCTAAGGCCAACTAAGTAAGTGGTCTTACTATCGACATGGTTAGAAATTGATGTTTATATGATGATACGTGTCCCGTAGTTTTGCACGTGTCATATGCCTGATATGTGTAAAATGGTTATGAAATTATGTGATTATGACATGTTTAAGGAATTATATGACTATCATATGTTTATAAAATGATATGACTATGATGTGTTTATGAAATGATATGACTATGATATGTTTATCAAATTATATGACTATGATATGTTTATGAAATGACATGACTATGATATATTTGTGACATGATATAACTATGATATGTTATGGTAATATTATGACACTTGTTATGATGTGATGTGCTAATGATACGATATATATGATGGTGTAACACGTTTGGCAATATAATACATGTTATGACATGTTTTATGATATGATACGTGCATAATATAATACGATATGTCAAAGGATATGTTATGTGCATGATATGAAATAAGACGATGTATGATATGAATGATATGATATTCAACTCCAATACATGTCTTAAAGGCTATGTTGTAAAATGATATGATACGAAGAAAAATGGAAGGAGTTGTTTTATATGATTTAATGAATGAAAATGTTTGGATCTCGTGCATCATTGTGTGTTACATGTGCAAGAAATATTCCCTTTTACAATGGTACAGACGCGTAAGTTATGAGGCACAAAAATGATCATTATGTTTATCATAATGTTATGATAGTCACTATTCCTACCGGGTGTCTGACAATATCTACTAGATAATGTTAGCCCGACAAGAAACGGGGCTCAGAAGGTCTGCGAACCAATTGGTAGGTCCATTCTCGCATATGTGGGCCGTGCGTAGAATAGTAAATACACATTCAATTAACCATTTAGGATAGTCACATAAGGGAATACGGATTGAAAGGATAGGTCACATTCATGATTGTATGTTTTTGCATTTAACCTCAATAGTGGGATCACTTTTTTAGTATTTCTTAAAATACTCAAGGTACATTCTACTTCTATTTCAGGTAAAGACAAGGCACTTCTATATGGTTGACGACGACATTGCAAGTCGAGACCATGACATATGCATAGGATAGTTATATTGAACTTATTAGACTTTAGGTTAGAATAGGATGTTTTTACTTTTAATGTTTATTTATTTTATTTAGTATTTCGTTATGTTGTTTTAAAGATGTTTTCGAACACCTAATTATTTTATTTAGTATTTTAAAGATATTTTCGAACATGTAATTATATGATGATATGATATCATAGCATAACATATATATTCTCATTTATACAAGTAATTATGTAAGAAGTAGTACTATTGAAAGAATTAGGTAGTTATTTCTAATATGGTGAAGTACCTCCACGTAGGTTGATACGAATTTCGAGGGATAAGTCAAGCAAATCTTGAAAATAAGATAGAACGTCAGCTAAGGTCAACCAAGTAAGTGACCATACTATCAAGTCGGTCGAAAGAATTGTCTTAGGTATAATGACATGTGTCTAGTGGCTCCTGCTCGTGTCATGTGTTTGTTATGATGTGTTATGATAATATGTTATGCTATGATGATATTATGATGTTGTGATATGTTATGATGACATGAGATATATGACGATATGATATATTATGATGATATGTATGTATGAGATGTCATATTGCACTATGACATGAACATGGTTGGCAATGAAATGTATGACATGCTCCAACAAGTATGACAATGAAGATTTGTCTGATACAACCCCTAAGTAATGTCATGAATGAATGGTTAAGATGAAAAGTATAAAGACCTCATGCATACCGTATGTTCACATGAATTGAGATACTTCCCATTTTATGATGTGTATAGACACATACACTATAATGATGAGATGACCATCATGCTTTACAGGATGCACAATGGTTGTTGCACATTTGGGTATCCAGCTACGGTCAACTAGCCCGACCAGTAGATCCAGGGGATGTGCAATCCCACATGGTGGGCCCATGCTCACACGTGTGAATCGTGTGTAGGAAAGTATTACAAATTCAATTTGCTCCGACTAGAGGCCACCTAAGAGATTAGGATTTTAAATCATAGGTCACTATTCAATGATTGCATGTGTTTGCATTGCATGACTCCAATAATAGAGTCACTTATTGAGTATTTGTTAAAATACTCAAGTCATATGCTGTTTTTATATTTCAAATAACGGCAGGAACCCATGTATGATTGACGGCGACATCGCATCAAAGACCATGAAACTTGCATAGGGTAGTTGCTCTTTTATAATTTAACCTAAACAATATGACTAACATGCCCGATGATAACGTTAAACCGTTCGCACCCATTAAAAGCATATTAAAATTACCCATTCAATCTTCAAAATTATTAAACATATATCTATAGGGTAAGTTTTTTGTAAGAGAGAGAATGGCAAAAGTGTAAATATGGAAATAGCTTTATGGGATGTAACCCATAAAAGTTATGATCCATAATTACAAATTCATGTATGTTCTGGTTGGTTGAATCAAGACATAGGACAAAAAGAAGGCTACCTAGTGTTACATGGACTTCACTATGATAACCCTTTACCGCCTCAGCCGGTTTCCCCTTCCCCTCCTCTTCCCTTTATCACCAATCCATCTCTGCAGTCCTTAGCCCACCATTCCCTCTCTCTCTCTCTCTAACTCTCTCGCTCTCTCTGTTGACCGTAAAATCAAACGCTGCCCGTAATTCTTCGGTCACCGGCGGCGAAGAAAAGAAAAACCAATTATTTTATCTTGAGGGTGTTTTATTAGAGAGAAATTTGACGCCTTTACTACGATATGCACGAGGAGAATATTCAACTGGGTCACTTCAGAATTCAGCTTACGGTGGTGGTCGGCGGCGGAGGCGGCGGAGTTTGATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCAGCGTCTCTTTTGATATTGCCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCAGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGCGGTCACGATTCTGCTTGA

mRNA sequence

ATGCAAACGGCTGCCCATGTGATCAACAAGCTTCCCCAGCCAAGGCTAGGGTTTGTCTCACCATTTGAGATACTATGGGACATGAAACCTACAGTTAGCTACTTCCGAGTATTTGATTGTGTTTGCTATGTATTTGTGCCTGACCATCTACGTAGCAAGTTTGACAAGAAAGCAGTCAAGTGCATATTTGTCGGATATGATAATCAAAGAAAAGGGTGGAAGTGTTGTGATCCTACAAGTGAAAAATGCTATACATCAAGAGATGTAGTTTTCGATGAAGCATCTACATGGTGGTCCTCGGAGAAGAAGTTGGACGTGAAGAATGCTTTCTTGCACGGAGAGTTAAACAGGGAGATCTACATGAACCAACCAAAAGGATTTGAGAGTGCAACTAATCCTAATCACGTATGCAAGCTTAGAATAGCTCTTTATGGGTTGAAGCAAGCACCAAGAGCTTGGTATGGAGACCACGATACTCGAAGATCAACCACTGGGTATGTGTTCAAGTTGGGTTCGGGAACAATTTCTTGGTGTAGCAAAAGACAACCAACAGTATCGTTGTCAACTATAAAAGCAGAGTATAGAGCAGCAGCTGAGCAGCTCAGGAAAGTACGTGTCCTTAGCCCACCATTCCCTCTCTCTCTCTCTCTAACTCTCTCGCTCTCTCTGTTGACCGTAAAATCAAACGCTGCCCGTAATTCTTCGGTCACCGGCGGCGAAGAAAAGAAAAACCAATTATTTTATCTTGAGGGTGTTTTATTAGAGAGAAATTTGACGCCTTTACTACGATATGCACGAGGAGAATATTCAACTGGGTCACTTCAGAATTCAGCTTACGGTGGTGGTCGGCGGCGGAGGCGGCGGAGTTTGATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCAGCGTCTCTTTTGATATTGCCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCAGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGCGGTCACGATTCTGCTTGA

Coding sequence (CDS)

ATGCAAACGGCTGCCCATGTGATCAACAAGCTTCCCCAGCCAAGGCTAGGGTTTGTCTCACCATTTGAGATACTATGGGACATGAAACCTACAGTTAGCTACTTCCGAGTATTTGATTGTGTTTGCTATGTATTTGTGCCTGACCATCTACGTAGCAAGTTTGACAAGAAAGCAGTCAAGTGCATATTTGTCGGATATGATAATCAAAGAAAAGGGTGGAAGTGTTGTGATCCTACAAGTGAAAAATGCTATACATCAAGAGATGTAGTTTTCGATGAAGCATCTACATGGTGGTCCTCGGAGAAGAAGTTGGACGTGAAGAATGCTTTCTTGCACGGAGAGTTAAACAGGGAGATCTACATGAACCAACCAAAAGGATTTGAGAGTGCAACTAATCCTAATCACGTATGCAAGCTTAGAATAGCTCTTTATGGGTTGAAGCAAGCACCAAGAGCTTGGTATGGAGACCACGATACTCGAAGATCAACCACTGGGTATGTGTTCAAGTTGGGTTCGGGAACAATTTCTTGGTGTAGCAAAAGACAACCAACAGTATCGTTGTCAACTATAAAAGCAGAGTATAGAGCAGCAGCTGAGCAGCTCAGGAAAGTACGTGTCCTTAGCCCACCATTCCCTCTCTCTCTCTCTCTAACTCTCTCGCTCTCTCTGTTGACCGTAAAATCAAACGCTGCCCGTAATTCTTCGGTCACCGGCGGCGAAGAAAAGAAAAACCAATTATTTTATCTTGAGGGTGTTTTATTAGAGAGAAATTTGACGCCTTTACTACGATATGCACGAGGAGAATATTCAACTGGGTCACTTCAGAATTCAGCTTACGGTGGTGGTCGGCGGCGGAGGCGGCGGAGTTTGATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCAGCGTCTCTTTTGATATTGCCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCAGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGCGGTCACGATTCTGCTTGA

Homology

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BLAST of CmoCh03G001620 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-16
Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 1


Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           +QTA ++IN+ P   L F  P  +  + + + S+ +VF C  +  VP   R+K D K++ 
Sbjct: 614 VQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIP 673

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEKKLDVKNAFLHGELNREIY 120
           CIF+GY ++  G++  DP  +K   SRDVVF E+    +++    VKN  +   +     
Sbjct: 674 CIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPST 733

Query: 121 MNQPKGFESATN 133
            N P   ES T+
Sbjct: 734 SNNPTSAESTTD 745

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BLAST of CmoCh03G001620 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 3.2e-09
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 1


Query: 3   TAAHVINKLPQPRL--GFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 62
           TA ++IN++P   L     +P+E+  + KP + + RVF    YV + +  + KFD K+ K
Sbjct: 616 TATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNK-QGKFDDKSFK 675

Query: 63  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEAS 96
            IFVGY  +  G+K  D  +EK   +RDVV DE +
Sbjct: 676 SIFVGY--EPNGFKLWDAVNEKFIVARDVVVDETN 707

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BLAST of CmoCh03G001620 vs. Swiss-Prot
Match: ARGOS_ORYSJ (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica GN=ARGOS PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-07
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 295 FFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEH 354
           +FS+ S+ +L+ V ASL+ILPLVLPPLPPPP +L+ VPV ++  LL LA  P+   +   
Sbjct: 99  YFSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPT-TTSSSS 158

Query: 355 RVGADGGGGHDSA 368
             G  GGGG + A
Sbjct: 159 SAGGGGGGGRNGA 170

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BLAST of CmoCh03G001620 vs. Swiss-Prot
Match: ARL_ARATH (ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.0e-07
Identity = 47/116 (40.52%), Postives = 62/116 (53.45%), Query Frame = 1


Query: 233 NSSVTGGEEKKNQLFYLEGVLLERNLTPLLRYARGE-YSTGSLQNSAYGGGRRRRRRSLM 292
           N  V G   +KN  F        R   P     + E + T S QNS          R L+
Sbjct: 24  NMDVRGDHNRKNTSF--------RGSAPAPIMGKQELFRTLSSQNSP---------RRLI 83

Query: 293 VRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 348
             ++FSL S+ +L+ + ASLLILPL+LPPLPPPP +LL +P+ IM  L+ LA  PS
Sbjct: 84  SASYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

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BLAST of CmoCh03G001620 vs. Swiss-Prot
Match: ARGOS_BRARP (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis GN=ARGOS PE=2 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 8.6e-07
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 287 RRSLMVRA-FFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALS 346
           ++ LM+ A +FSL S+ +L+ + ASLLILPLVLPPLPPPP +LL VP+ IM  L+ LA  
Sbjct: 62  QKRLMIPANYFSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFM 121

Query: 347 PS 348
           PS
Sbjct: 122 PS 123

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BLAST of CmoCh03G001620 vs. TrEMBL
Match: A5AKW8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 79/104 (75.96%), Postives = 94/104 (90.38%), Query Frame = 1


Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+TAA VIN+LPQ RL F SPFE LW++KPTVSYFRVF CVCYVFVP+HLRSK DKKAV+
Sbjct: 608 MKTAAFVINRLPQQRLNFSSPFEKLWNIKPTVSYFRVFGCVCYVFVPNHLRSKMDKKAVR 667

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEKKL 105
           C+ VGYD+QRK W+CCDPT+ KCYTSR+VVFDE+S+WWSSEK++
Sbjct: 668 CVLVGYDSQRKXWRCCDPTTGKCYTSRNVVFDESSSWWSSEKEI 711

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BLAST of CmoCh03G001620 vs. TrEMBL
Match: I1IK66_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.8e-41
Identity = 86/168 (51.19%), Postives = 114/168 (67.86%), Query Frame = 1


Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+TAAHVINKLPQ RLGF SP E LW MKP +S+ +VF CVCY+FVPDHLR+KF+KKA +
Sbjct: 679 MRTAAHVINKLPQVRLGFKSPHEKLWRMKPAISHLKVFGCVCYIFVPDHLRTKFEKKAKR 738

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEKK-----LDVKNAFLHGEL 120
           CIFVG D+ RKGW+CCDPT+ KC+TSR++VFDEAS+WWS +K+      DV+      E 
Sbjct: 739 CIFVGCDDARKGWRCCDPTTGKCHTSRNIVFDEASSWWSPKKEEIPESPDVEEVI---EE 798

Query: 121 NREIYMNQPKGFESATNPNHVCKLRIALYGLKQAPRAWYGDHDTRRST 164
            R+  +  P   E ++        +  ++  K+ P+    D + RRST
Sbjct: 799 ERDQKLETPSEGERSSPSKTKSPWKTGIHQPKE-PQTEEHDQELRRST 842

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BLAST of CmoCh03G001620 vs. TrEMBL
Match: I1IHF9_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.7e-41
Identity = 74/103 (71.84%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+TAAHVINKLPQ RLGF SP E LW MKP +S+ +VF CVCY+FVPDHLR+KF+KKA +
Sbjct: 742 MRTAAHVINKLPQVRLGFKSPHEKLWRMKPAISHLKVFGCVCYIFVPDHLRTKFEKKAKR 801

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEKK 104
           CIFVGYD+ RKGW+CCDPT+ KC+TSR++VFDEAS+WWS +K+
Sbjct: 802 CIFVGYDDARKGWRCCDPTTGKCHTSRNIVFDEASSWWSPKKE 844

[Close]

BLAST of CmoCh03G001620 vs. TrEMBL
Match: I1J3P8_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.7e-41
Identity = 74/103 (71.84%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+TAAHVINKLPQ RLGF SP E LW MKP +S+ +VF CVCY+FVPDHLR+KF+KKA +
Sbjct: 694 MRTAAHVINKLPQVRLGFKSPHEKLWRMKPAISHLKVFGCVCYIFVPDHLRTKFEKKAKR 753

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEKK 104
           CIFVGYD+ RKGW+CCDPT+ KC+TSR++VFDEAS+WWS +K+
Sbjct: 754 CIFVGYDDARKGWRCCDPTTGKCHTSRNIVFDEASSWWSPKKE 796

[Close]

BLAST of CmoCh03G001620 vs. TrEMBL
Match: I1H961_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.7e-41
Identity = 74/103 (71.84%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+TAAHVINKLPQ RLGF SP E LW MKP +S+ +VF CVCY+FVPDHLR+KF+KKA +
Sbjct: 742 MRTAAHVINKLPQVRLGFKSPHEKLWRMKPAISHLKVFGCVCYIFVPDHLRTKFEKKAKR 801

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEKK 104
           CIFVGYD+ RKGW+CCDPT+ KC+TSR++VFDEAS+WWS +K+
Sbjct: 802 CIFVGYDDARKGWRCCDPTTGKCHTSRNIVFDEASSWWSPKKE 844

[Close]

BLAST of CmoCh03G001620 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-10
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 1


Query: 55  DKKAVKCIFVGYDNQRKGWKCCDPTSEKC-YTSRDVVFDEASTWWSSEKKLDVKNAFLHG 114
           ++   + +  GY  Q++G    +  S  C  TS  ++   ++ +  +  +LD+ NAFL+G
Sbjct: 144 ERYKARLVAKGY-TQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNG 203

Query: 115 ELNREIYMNQPKGFES----ATNPNHVCKLRIALYGLKQAPRAWY 155
           +L+ EIYM  P G+ +    +  PN VC L+ ++YGLKQA R W+
Sbjct: 204 DLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWF 247

[Close]

BLAST of CmoCh03G001620 vs. TAIR10
Match: AT2G44080.1 (AT2G44080.1 ARGOS-like)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-08
Identity = 47/116 (40.52%), Postives = 62/116 (53.45%), Query Frame = 1


Query: 233 NSSVTGGEEKKNQLFYLEGVLLERNLTPLLRYARGE-YSTGSLQNSAYGGGRRRRRRSLM 292
           N  V G   +KN  F        R   P     + E + T S QNS          R L+
Sbjct: 24  NMDVRGDHNRKNTSF--------RGSAPAPIMGKQELFRTLSSQNSP---------RRLI 83

Query: 293 VRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 348
             ++FSL S+ +L+ + ASLLILPL+LPPLPPPP +LL +P+ IM  L+ LA  PS
Sbjct: 84  SASYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of CmoCh03G001620 vs. TAIR10
Match: AT3G59900.1 (AT3G59900.1 auxin-regulated gene involved in organ size)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-07
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 286 RRRSLMVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALS 345
           ++R ++   +FSL S+ +L+ + ASLLILPLVLPPLPPPP +LL VP+ IM  L+ LA  
Sbjct: 55  QKRMMIPANYFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFM 114

Query: 346 PS 348
           PS
Sbjct: 115 PS 116

[Close]

BLAST of CmoCh03G001620 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-07
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1


Query: 153 WYGDHDTRRSTTGYVFKLGSGTISWCSKRQPTVSLSTIKAEYRAAA 199
           W G   TRRSTTG+   LG   ISW +KRQPTVS S+ + EYRA A
Sbjct: 172 WAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALA 217

[Close]

BLAST of CmoCh03G001620 vs. TAIR10
Match: AT2G41230.1 (AT2G41230.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-07
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 294 AFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPA 352
           +  + RSVA+L+ ++  LLILP  LPPLPPPP  LL +P+L+M  L+FLA SPS  P+
Sbjct: 23  SLITARSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of CmoCh03G001620 vs. NCBI nr
Match: gi|147794801|emb|CAN71427.1| (hypothetical protein VITISV_027864 [Vitis vinifera])

HSP 1 Score: 184.1 bits (466), Expect = 4.4e-43
Identity = 79/104 (75.96%), Postives = 94/104 (90.38%), Query Frame = 1


Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+TAA VIN+LPQ RL F SPFE LW++KPTVSYFRVF CVCYVFVP+HLRSK DKKAV+
Sbjct: 608 MKTAAFVINRLPQQRLNFSSPFEKLWNIKPTVSYFRVFGCVCYVFVPNHLRSKMDKKAVR 667

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEKKL 105
           C+ VGYD+QRK W+CCDPT+ KCYTSR+VVFDE+S+WWSSEK++
Sbjct: 668 CVLVGYDSQRKXWRCCDPTTGKCYTSRNVVFDESSSWWSSEKEI 711

[Close]

BLAST of CmoCh03G001620 vs. NCBI nr
Match: gi|1012354191|gb|KYP65378.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 173.7 bits (439), Expect = 5.9e-40
Identity = 73/101 (72.28%), Postives = 91/101 (90.10%), Query Frame = 1


Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+T+A+VIN+LPQ RLGFVSP E LW+ KP+VSYFRVF CVCYVF+P   RSKF+KKA++
Sbjct: 227 MKTSAYVINRLPQARLGFVSPHEKLWNTKPSVSYFRVFGCVCYVFMPGQERSKFEKKAIR 286

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSE 102
           CIFVGYD+QRKGW+CC+PT+ +CY SR+VVFDEAS+WWSS+
Sbjct: 287 CIFVGYDSQRKGWRCCNPTTGRCYVSRNVVFDEASSWWSSQ 327

[Close]

BLAST of CmoCh03G001620 vs. NCBI nr
Match: gi|1012348972|gb|KYP60163.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 169.9 bits (429), Expect = 8.5e-39
Identity = 72/101 (71.29%), Postives = 90/101 (89.11%), Query Frame = 1


Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+TAA+VINKLPQ RLGFVSP E LW+ KP+VSYF+VF CVCYVFVP    SKF+KKA++
Sbjct: 4   MKTAAYVINKLPQARLGFVSPHEKLWNTKPSVSYFQVFGCVCYVFVPGQECSKFEKKAIR 63

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSE 102
           CIFVGYD+Q+KGW+CC+PT+ +CY S++VVFDEAS+WWSS+
Sbjct: 64  CIFVGYDSQQKGWRCCNPTTGRCYVSKNVVFDEASSWWSSQ 104

[Close]

BLAST of CmoCh03G001620 vs. NCBI nr
Match: gi|147810137|emb|CAN73532.1| (hypothetical protein VITISV_012827 [Vitis vinifera])

HSP 1 Score: 167.5 bits (423), Expect = 4.2e-38
Identity = 72/104 (69.23%), Postives = 88/104 (84.62%), Query Frame = 1


Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+TAA VIN+LPQ RL F SPFE LW++KP VSYFRVF CVCY FVP+H RSK DKK V+
Sbjct: 605 MKTAAFVINRLPQQRLNFSSPFEKLWNIKPIVSYFRVFGCVCYAFVPNHXRSKMDKKXVR 664

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEKKL 105
           C+ VGYD+Q K W+CC+PT+ K YTSR+VVFDE+S+WWSSEK++
Sbjct: 665 CVLVGYDSQXKRWRCCNPTTGKYYTSRNVVFDESSSWWSSEKEI 708

[Close]

BLAST of CmoCh03G001620 vs. NCBI nr
Match: gi|1012338300|gb|KYP49556.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 155.2 bits (391), Expect = 2.2e-34
Identity = 69/101 (68.32%), Postives = 85/101 (84.16%), Query Frame = 1


Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+TAA+VIN+L Q RLGFVSP E LW+ KP+VSYFRVF CVCYVFVP    +KF+KKA+ 
Sbjct: 23  MKTAAYVINRLSQVRLGFVSPREKLWNTKPSVSYFRVFGCVCYVFVPGQEHNKFEKKAIW 82

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSE 102
           CIFVGYD+Q KGW+CC+ T+ +CY SR+VVFDEAS+ WSS+
Sbjct: 83  CIFVGYDSQGKGWRCCNLTTGRCYVSRNVVFDEASSLWSSQ 123

The following BLAST results are available for this feature:

BLAST of CmoCh03G001620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.6e-16	32.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	3.2e-09	37.89	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
ARGOS_ORYSJ	2.3e-07	49.32	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]
ARL_ARATH	3.0e-07	40.52	ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1	[more]
ARGOS_BRARP	8.6e-07	58.06	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]

BLAST of CmoCh03G001620 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AKW8_VITVI	3.0e-43	75.96	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1	[more]
I1IK66_BRADI	2.8e-41	51.19	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
I1IHF9_BRADI	3.7e-41	71.84	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
I1J3P8_BRADI	3.7e-41	71.84	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
I1H961_BRADI	3.7e-41	71.84	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]

BLAST of CmoCh03G001620 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	4.0e-10	33.33	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
AT2G44080.1	1.7e-08	40.52	ARGOS-like	[more]
AT3G59900.1	1.1e-07	54.84	auxin-regulated gene involved in organ size	[more]
ATMG00810.1	1.1e-07	58.70	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]
AT2G41230.1	4.1e-07	53.45	unknown protein	[more]

BLAST of CmoCh03G001620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147794801\|emb\|CAN71427.1\|	4.4e-43	75.96	hypothetical protein VITISV_027864 [Vitis vinifera]	[more]
gi\|1012354191\|gb\|KYP65378.1\|	5.9e-40	72.28	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]
gi\|1012348972\|gb\|KYP60163.1\|	8.5e-39	71.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]
gi\|147810137\|emb\|CAN73532.1\|	4.2e-38	69.23	hypothetical protein VITISV_012827 [Vitis vinifera]	[more]
gi\|1012338300\|gb\|KYP49556.1\|	2.2e-34	68.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G001620.1	CmoCh03G001620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 102..166 score: 1.2
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..198 score: 7.3
None	No IPR available	PANTHER	PTHR11439:SF164	SUBFAMILY NOT NAMED	coord: 1..198 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G001620	Melon (DHL92) v3.6.1	cmomedB680
CmoCh03G001620	Melon (DHL92) v3.6.1	cmomedB697
CmoCh03G001620	Silver-seed gourd	carcmoB0394
CmoCh03G001620	Cucumber (Chinese Long) v3	cmocucB0775
CmoCh03G001620	Watermelon (97103) v2	cmowmbB647
CmoCh03G001620	Watermelon (97103) v2	cmowmbB666
CmoCh03G001620	Wax gourd	cmowgoB0795
CmoCh03G001620	Cucurbita moschata (Rifu)	cmocmoB461
CmoCh03G001620	Cucumber (Gy14) v1	cgycmoB0103
CmoCh03G001620	Cucumber (Gy14) v1	cgycmoB0937
CmoCh03G001620	Cucurbita maxima (Rimu)	cmacmoB657
CmoCh03G001620	Cucurbita maxima (Rimu)	cmacmoB863
CmoCh03G001620	Wild cucumber (PI 183967)	cmocpiB664
CmoCh03G001620	Cucumber (Chinese Long) v2	cmocuB653
CmoCh03G001620	Melon (DHL92) v3.5.1	cmomeB608
CmoCh03G001620	Watermelon (Charleston Gray)	cmowcgB593
CmoCh03G001620	Cucurbita pepo (Zucchini)	cmocpeB605
CmoCh03G001620	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G001620	Cucurbita pepo (Zucchini)	cmocpeB620
CmoCh03G001620	Bottle gourd (USVL1VR-Ls)	cmolsiB584
CmoCh03G001620	Bottle gourd (USVL1VR-Ls)	cmolsiB600
CmoCh03G001620	Cucumber (Gy14) v2	cgybcmoB502