CmoCh03G000090 (gene) Cucurbita moschata (Rifu)

NameCmoCh03G000090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr03 : 136190 .. 136734 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGCTTTCTCCTTCGCACATCGCTATCGTTGTTGTTGTTCTTATCTTTGCCGGTTCTCTTCTTCATATAAATTATATCTTATTATGAGTATTACAAACATTATCGTCATCCATATCTGATATATCTCAAGGCTTTGATGTTCATACATGGGATTATCACAATCGTTAAAATAATTTAGCCTTAGAATTTTGATGTTAATAGTTTATTGATGTTGTAGTTTTCTTACTTGACATGTTTTTACATGCGTAGTGTTTAATTGTTAATAGTTTATGGATGTTGTAGTTTTCTTACTTGACATGTTTTTACATGCGTAGTGTTTAATTATTTTTAATTTTAATTTTGTAGTAGCAATGACTTTGGTATGTGAAGGAGTCTCGACGGCCGAAAGATGTGAAGAAAGATTGTATGATCAGGGGTGCATACTCGATGATTGTGGAAAAAAATGTTGGGAAAAGCACCAAGATGTCTCACATACGTGCATACCTACTGATCGTGCGCAAACCATCTATGCTTGTTATTGTTTCTTTAATTGTGCTTAA

mRNA sequence

ATGACAAAGCTTTCTCCTTCGCACATCGCTATCGTTGTTGTTGTTCTTATCTTTGCCGTAGCAATGACTTTGGTATGTGAAGGAGTCTCGACGGCCGAAAGATGTGAAGAAAGATTGTATGATCAGGGGTGCATACTCGATGATTGTGGAAAAAAATGTTGGGAAAAGCACCAAGATGTCTCACATACGTGCATACCTACTGATCGTGCGCAAACCATCTATGCTTGTTATTGTTTCTTTAATTGTGCTTAA

Coding sequence (CDS)

ATGACAAAGCTTTCTCCTTCGCACATCGCTATCGTTGTTGTTGTTCTTATCTTTGCCGTAGCAATGACTTTGGTATGTGAAGGAGTCTCGACGGCCGAAAGATGTGAAGAAAGATTGTATGATCAGGGGTGCATACTCGATGATTGTGGAAAAAAATGTTGGGAAAAGCACCAAGATGTCTCACATACGTGCATACCTACTGATCGTGCGCAAACCATCTATGCTTGTTATTGTTTCTTTAATTGTGCTTAA
BLAST of CmoCh03G000090 vs. TrEMBL
Match: A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.1e-20
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1

Query: 11 IVVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQDVSHTCIPTDRA 70
          I+   LIFAVA+ L  + VS A+RC++ LY+ GC L+DCGKKCWEKH  VSH CIPT+ +
Sbjct: 6  IICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPTNPS 65

Query: 71 QTIYACYCFFNC 83
          QTIYACYCFF+C
Sbjct: 66 QTIYACYCFFDC 77

BLAST of CmoCh03G000090 vs. TrEMBL
Match: A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.2e-17
Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 1

Query: 1  MTKLSPSHIAIVVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQDV 60
          MTKL  S I  + +VLI AVAM  + +G + A RC++ LY+ GC L DCG+KCWEKH + 
Sbjct: 1  MTKLYSSWI--LTIVLIIAVAMISIPQG-ALAARCQDILYNSGCTLADCGQKCWEKHHEA 60

Query: 61 SHTCIPTDRAQTIYACYCFFNC 83
          S  CIPTD  QTIYACYCF+ C
Sbjct: 61 SRQCIPTDPDQTIYACYCFYTC 79

BLAST of CmoCh03G000090 vs. TrEMBL
Match: A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.9e-12
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1

Query: 1  MTKLSPSHIAIVVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQDV 60
          M  LS   +AI++V  IFAV+M LV +G S A +C++RLY  GCI  +CG+KC + H   
Sbjct: 18 MANLSSFRVAIIIV--IFAVSMILVPQGTS-ALKCQDRLYVGGCIQHECGQKCSQLHHGG 77

Query: 61 SHTCIPTDRAQTIYACYCFFNC 83
          +  CI TD   T YACYCF+NC
Sbjct: 78 TSKCISTDPTFTKYACYCFYNC 96

BLAST of CmoCh03G000090 vs. NCBI nr
Match: gi|700199739|gb|KGN54897.1| (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 5.8e-20
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1

Query: 11 IVVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQDVSHTCIPTDRA 70
          I+   LIFAVA+ L  + VS A+RC++ LY+ GC L+DCGKKCWEKH  VSH CIPT+ +
Sbjct: 6  IICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPTNPS 65

Query: 71 QTIYACYCFFNC 83
          QTIYACYCFF+C
Sbjct: 66 QTIYACYCFFDC 77

BLAST of CmoCh03G000090 vs. NCBI nr
Match: gi|700209891|gb|KGN64987.1| (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.6e-17
Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 1

Query: 1  MTKLSPSHIAIVVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQDV 60
          MTKL  S I  + +VLI AVAM  + +G + A RC++ LY+ GC L DCG+KCWEKH + 
Sbjct: 1  MTKLYSSWI--LTIVLIIAVAMISIPQG-ALAARCQDILYNSGCTLADCGQKCWEKHHEA 60

Query: 61 SHTCIPTDRAQTIYACYCFFNC 83
          S  CIPTD  QTIYACYCF+ C
Sbjct: 61 SRQCIPTDPDQTIYACYCFYTC 79

BLAST of CmoCh03G000090 vs. NCBI nr
Match: gi|700199652|gb|KGN54810.1| (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-11
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1

Query: 1  MTKLSPSHIAIVVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQDV 60
          M  LS   +AI++V  IFAV+M LV +G S A +C++RLY  GCI  +CG+KC + H   
Sbjct: 18 MANLSSFRVAIIIV--IFAVSMILVPQGTS-ALKCQDRLYVGGCIQHECGQKCSQLHHGG 77

Query: 61 SHTCIPTDRAQTIYACYCFFNC 83
          +  CI TD   T YACYCF+NC
Sbjct: 78 TSKCISTDPTFTKYACYCFYNC 96

BLAST of CmoCh03G000090 vs. NCBI nr
Match: gi|802775625|ref|XP_012090834.1| (PREDICTED: defensin-like protein 156 [Jatropha curcas])

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-07
Identity = 24/68 (35.29%), Postives = 45/68 (66.18%), Query Frame = 1

Query: 15 VLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQDVSHTCIPTDRAQTIY 74
          +L   ++++ +       ++C+E L++ GC+L+DC K+C+EKH +    CIP ++A+  Y
Sbjct: 12 ILFLIISVSSMVPQARAQKKCQEVLHEIGCVLEDCKKECYEKHNENGGVCIP-NQAKEDY 71

Query: 75 ACYCFFNC 83
          +CYCF+ C
Sbjct: 72 SCYCFWTC 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2R3_CUCSA4.1e-2063.89Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1[more]
A0A0A0LVZ5_CUCSA3.2e-1757.32Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1[more]
A0A0A0KYP7_CUCSA6.9e-1250.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700199739|gb|KGN54897.1|5.8e-2063.89hypothetical protein Csa_4G576870 [Cucumis sativus][more]
gi|700209891|gb|KGN64987.1|4.6e-1757.32hypothetical protein Csa_1G172580 [Cucumis sativus][more]
gi|700199652|gb|KGN54810.1|1.0e-1150.00hypothetical protein Csa_4G507400 [Cucumis sativus][more]
gi|802775625|ref|XP_012090834.1|7.4e-0735.29PREDICTED: defensin-like protein 156 [Jatropha curcas][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G000090.1CmoCh03G000090.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None