CmoCh03G000070 (gene) Cucurbita moschata (Rifu)

NameCmoCh03G000070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr03 : 112380 .. 112856 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGATTTCTCCTTCGCGCATCGCTATCGTTGTTGTTCTTATCTTTGCCGGTTCTCTTCTTCATATAGATTATATCTTATTATGAGTATTACAAACATTATCGTCATCCATATCTGATATATCGCAAGGCTTTGATGTTCATACATGGGATTATCGTAATCGTTAAAATGATTTAGCCTTACAATTTTGATGTTAATAGTTTATGGATGTTGTAGTTTTCTTACTTGACATGTTTTTACCTGCGTAGTGTTTAATTATTTTTAATTTTAATTTTGTAGTAGCAATGACTTTGGTATGTGAAGGAGTCTCGACGGCCGAAAGATGTGAAGAAAGATTGTATGATCAGGGGTGCATACTCGATGATTGTGGAAAAAAATGTTGGGAAAAGCACCAAGAAGTCTCACATACGTGCATACCTTTTGATCGTGCGCAAACCATCTATGCTTGTTATTGTTTTTTTAATTGCGCTTAA

mRNA sequence

ATGACAAAGATTTCTCCTTCGCGCATCGCTATCGTTGTTGTTCTTATCTTTGCCGTAGCAATGACTTTGGTATGTGAAGGAGTCTCGACGGCCGAAAGATGTGAAGAAAGATTGTATGATCAGGGGTGCATACTCGATGATTGTGGAAAAAAATGTTGGGAAAAGCACCAAGAAGTCTCACATACGTGCATACCTTTTGATCGTGCGCAAACCATCTATGCTTGTTATTGTTTTTTTAATTGCGCTTAA

Coding sequence (CDS)

ATGACAAAGATTTCTCCTTCGCGCATCGCTATCGTTGTTGTTCTTATCTTTGCCGTAGCAATGACTTTGGTATGTGAAGGAGTCTCGACGGCCGAAAGATGTGAAGAAAGATTGTATGATCAGGGGTGCATACTCGATGATTGTGGAAAAAAATGTTGGGAAAAGCACCAAGAAGTCTCACATACGTGCATACCTTTTGATCGTGCGCAAACCATCTATGCTTGTTATTGTTTTTTTAATTGCGCTTAA
BLAST of CmoCh03G000070 vs. TrEMBL
Match: A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-19
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 1

Query: 7  SRIAIVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQEVSHTCIPF 66
          SRI I   LIFAVA+ L  + VS A+RC++ LY+ GC L+DCGKKCWEKH  VSH CIP 
Sbjct: 4  SRI-ICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 63

Query: 67 DRAQTIYACYCFFNC 82
          + +QTIYACYCFF+C
Sbjct: 64 NPSQTIYACYCFFDC 77

BLAST of CmoCh03G000070 vs. TrEMBL
Match: A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-16
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1

Query: 1  MTKISPSRIAIVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQEVS 60
          MTK+  S I + +VLI AVAM  + +G + A RC++ LY+ GC L DCG+KCWEKH E S
Sbjct: 1  MTKLYSSWI-LTIVLIIAVAMISIPQG-ALAARCQDILYNSGCTLADCGQKCWEKHHEAS 60

Query: 61 HTCIPFDRAQTIYACYCFFNC 82
            CIP D  QTIYACYCF+ C
Sbjct: 61 RQCIPTDPDQTIYACYCFYTC 79

BLAST of CmoCh03G000070 vs. TrEMBL
Match: A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-11
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1

Query: 1  MTKISPSRIAIVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQEVS 60
          M  +S  R+AI++V IFAV+M LV +G S A +C++RLY  GCI  +CG+KC + H   +
Sbjct: 18 MANLSSFRVAIIIV-IFAVSMILVPQGTS-ALKCQDRLYVGGCIQHECGQKCSQLHHGGT 77

Query: 61 HTCIPFDRAQTIYACYCFFNC 82
            CI  D   T YACYCF+NC
Sbjct: 78 SKCISTDPTFTKYACYCFYNC 96

BLAST of CmoCh03G000070 vs. NCBI nr
Match: gi|700199739|gb|KGN54897.1| (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-19
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 1

Query: 7  SRIAIVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQEVSHTCIPF 66
          SRI I   LIFAVA+ L  + VS A+RC++ LY+ GC L+DCGKKCWEKH  VSH CIP 
Sbjct: 4  SRI-ICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 63

Query: 67 DRAQTIYACYCFFNC 82
          + +QTIYACYCFF+C
Sbjct: 64 NPSQTIYACYCFFDC 77

BLAST of CmoCh03G000070 vs. NCBI nr
Match: gi|700209891|gb|KGN64987.1| (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1

Query: 1  MTKISPSRIAIVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQEVS 60
          MTK+  S I + +VLI AVAM  + +G + A RC++ LY+ GC L DCG+KCWEKH E S
Sbjct: 1  MTKLYSSWI-LTIVLIIAVAMISIPQG-ALAARCQDILYNSGCTLADCGQKCWEKHHEAS 60

Query: 61 HTCIPFDRAQTIYACYCFFNC 82
            CIP D  QTIYACYCF+ C
Sbjct: 61 RQCIPTDPDQTIYACYCFYTC 79

BLAST of CmoCh03G000070 vs. NCBI nr
Match: gi|700199652|gb|KGN54810.1| (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-11
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1

Query: 1  MTKISPSRIAIVVVLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQEVS 60
          M  +S  R+AI++V IFAV+M LV +G S A +C++RLY  GCI  +CG+KC + H   +
Sbjct: 18 MANLSSFRVAIIIV-IFAVSMILVPQGTS-ALKCQDRLYVGGCIQHECGQKCSQLHHGGT 77

Query: 61 HTCIPFDRAQTIYACYCFFNC 82
            CI  D   T YACYCF+NC
Sbjct: 78 SKCISTDPTFTKYACYCFYNC 96

BLAST of CmoCh03G000070 vs. NCBI nr
Match: gi|802775625|ref|XP_012090834.1| (PREDICTED: defensin-like protein 156 [Jatropha curcas])

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07
Identity = 25/68 (36.76%), Postives = 45/68 (66.18%), Query Frame = 1

Query: 14 VLIFAVAMTLVCEGVSTAERCEERLYDQGCILDDCGKKCWEKHQEVSHTCIPFDRAQTIY 73
          +L   ++++ +       ++C+E L++ GC+L+DC K+C+EKH E    CIP ++A+  Y
Sbjct: 12 ILFLIISVSSMVPQARAQKKCQEVLHEIGCVLEDCKKECYEKHNENGGVCIP-NQAKEDY 71

Query: 74 ACYCFFNC 82
          +CYCF+ C
Sbjct: 72 SCYCFWTC 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2R3_CUCSA2.6e-1964.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1[more]
A0A0A0LVZ5_CUCSA1.6e-1656.79Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1[more]
A0A0A0KYP7_CUCSA2.0e-1149.38Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700199739|gb|KGN54897.1|3.7e-1964.00hypothetical protein Csa_4G576870 [Cucumis sativus][more]
gi|700209891|gb|KGN64987.1|2.3e-1656.79hypothetical protein Csa_1G172580 [Cucumis sativus][more]
gi|700199652|gb|KGN54810.1|2.9e-1149.38hypothetical protein Csa_4G507400 [Cucumis sativus][more]
gi|802775625|ref|XP_012090834.1|2.5e-0736.76PREDICTED: defensin-like protein 156 [Jatropha curcas][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G000070.1CmoCh03G000070.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None