CmoCh02G018430 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G018430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Copalyl diphosphate synthase 2
Location	Cmo_Chr02 : 10434163 .. 10435557 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAGAAGAATAATAAAGAAAGGATTCGTAAAGTGGTTGACTTTGGGATTTGTTTTGACAGGAGATCAGGCAATATGCAGCAGAAGGGAGGAGAAGGACTAGTTGGGATTTTGCTGCGAACTCTAACAAATATCTCGTTGGATATACTGGTGTCGCACGGCGTCGACATCACCCACCATTTGCACCAAGCTGTGAGAGTTTGTTTGTTACCCTTTCGTTCAACACTTCACATTCATTTTGCGCTTTCATGTCTCATCCTAATCATATCTCTCTCTACTTTTTTGAACAGTACTCAAATCCTTCATATCTCATCTCTTTTTCAGATATGAAAAATCCATCATACCTATCAAAAACTACAGATACTTTAACATATATTTGGTAGACATCAAGTGTAAATACAAAACACTTTAACTACTTGAAAAACCAAAACTAATAGTTAATGTTTTCATCGATAGTGGCAAAAATGGGTGTTTAAGTGGCAAGAGGATGGAGATGTGCACAAGGAAGAGGCAGAGTTATTGGTGCAGACAATAATTCTCAACTCAGGCTGTTCAACTTTGGAGGATCTGTTGTCCAATTCTCAATTTCAGAAGCTTTCCAACCTCACAAACAAAGTGTGCCATCAACTTGCTCACTTTAAAAAGCATAAGGTTAGTGTTTCATCCAGAGGTACAATCCATTCCACCCCACACAATCATGATAAAAACATTATATGCCACCTTAATCTTTGTTGTCCTTGTAAAACACTGAAACATAGATTCTTTACCTGACCTGACCTTTGTTTCATTAATCAGCTAAATAACGGTGGCCTCTATAAGGAGAAAACAGACAACAAAATGCCCCCAGAGATAGAAGAAGACATAAGGAAACTTGCGCAGCTGGTGATCCAAAAATCTTCGGATGGCAATGACATTGACTCACCAATTAAGCAAACATTTCTAACAGTAGCAAAAAGTGTGTACTATGCAGCTTATTTCGATGCTTGGACTATCAACTACCACATAGCCAAGGTCCTATTTGAAAGAGTGTTCTAATCCCAGCTACCCACACACCCATGTTGTATTGTCAAATTTTGTATATTCTTCACCACATGGGACACAAAAACTTTGGTCTGTGTTTCTTCTGTCAATAAAAAGACATCATCTTTAAAACCCAAATCATTGCCACTTCGACAGTGATCAAAAGTGAGACAACTCGACCTTTCGATTTCGATTTCCTTCTAATCAATGGCCTAGTAGTTAACAGGATAAGATAGAGTGTAGGTGGCAGTATATATGGTAGTGATGTGTTTCGCAAACCACATAGAAACGTTTGGAAGGGAATTTCTTTGAATCTTAGTGTTGTAATAGTTCTTGCTGTTTACGGTCTACCTTATGAAACAATGGCAG

mRNA sequence

ATGAAGAAGAAGAAGAATAATAAAGAAAGGATTCGTAAAGTGGTTGACTTTGGGATTTGTTTTGACAGGAGATCAGGCAATATGCAGCAGAAGGGAGGAGAAGGACTAGTTGGGATTTTGCTGCGAACTCTAACAAATATCTCGTTGGATATACTGGTGTCGCACGGCGTCGACATCACCCACCATTTGCACCAAGCTTGGCAAAAATGGGTGTTTAAGTGGCAAGAGGATGGAGATGTGCACAAGGAAGAGGCAGAGTTATTGGTGCAGACAATAATTCTCAACTCAGGCTGTTCAACTTTGGAGGATCTGTTGTCCAATTCTCAATTTCAGAAGCTTTCCAACCTCACAAACAAAGTGTGCCATCAACTTGCTCACTTTAAAAAGCATAAGCTAAATAACGGTGGCCTCTATAAGGAGAAAACAGACAACAAAATGCCCCCAGAGATAGAAGAAGACATAAGGAAACTTGCGCAGCTGGTGATCCAAAAATCTTCGGATGGCAATGACATTGACTCACCAATTAAGCAAACATTTCTAACAGTAGCAAAAAGTGTGTACTATGCAGCTTATTTCGATGCTTGGACTATCAACTACCACATAGCCAAGGTCCTATTTGAAAGAGTGTTCTAATCCCAGCTACCCACACACCCATGTTGTATTGTCAAATTTTGTATATTCTTCACCACATGGGACACAAAAACTTTGGTCTGTGTTTCTTCTGTCAATAAAAAGACATCATCTTTAAAACCCAAATCATTGCCACTTCGACAGTGATCAAAAGTGAGACAACTCGACCTTTCGATTTCGATTTCCTTCTAATCAATGGCCTAGTAGTTAACAGGATAAGATAGAGTGTAGGTGGCAGTATATATGGTAGTGATGTGTTTCGCAAACCACATAGAAACGTTTGGAAGGGAATTTCTTTGAATCTTAGTGTTGTAATAGTTCTTGCTGTTTACGGTCTACCTTATGAAACAATGGCAG

Coding sequence (CDS)

ATGAAGAAGAAGAAGAATAATAAAGAAAGGATTCGTAAAGTGGTTGACTTTGGGATTTGTTTTGACAGGAGATCAGGCAATATGCAGCAGAAGGGAGGAGAAGGACTAGTTGGGATTTTGCTGCGAACTCTAACAAATATCTCGTTGGATATACTGGTGTCGCACGGCGTCGACATCACCCACCATTTGCACCAAGCTTGGCAAAAATGGGTGTTTAAGTGGCAAGAGGATGGAGATGTGCACAAGGAAGAGGCAGAGTTATTGGTGCAGACAATAATTCTCAACTCAGGCTGTTCAACTTTGGAGGATCTGTTGTCCAATTCTCAATTTCAGAAGCTTTCCAACCTCACAAACAAAGTGTGCCATCAACTTGCTCACTTTAAAAAGCATAAGCTAAATAACGGTGGCCTCTATAAGGAGAAAACAGACAACAAAATGCCCCCAGAGATAGAAGAAGACATAAGGAAACTTGCGCAGCTGGTGATCCAAAAATCTTCGGATGGCAATGACATTGACTCACCAATTAAGCAAACATTTCTAACAGTAGCAAAAAGTGTGTACTATGCAGCTTATTTCGATGCTTGGACTATCAACTACCACATAGCCAAGGTCCTATTTGAAAGAGTGTTCTAA

Homology

[Close]

BLAST of CmoCh02G018430 vs. Swiss-Prot
Match: KSA_PEA (Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.3e-31
Identity = 78/174 (44.83%), Postives = 107/174 (61.49%), Query Frame = 1


Query: 36  LVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHKEEAELLVQTIILN 95
           LV  L  T+  IS D+ +S+G +I + +HQ W+KW+  WQ +GD  + EAELL+Q I L 
Sbjct: 632 LVESLFATIGEISWDVRLSYGHEIGYDMHQCWKKWLSSWQSEGDKCEGEAELLIQIINLC 691

Query: 96  SGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKTDNKMPPEIEEDIR 155
           S     E     S  Q L  LTN +CH+L+ ++K K   G   +E   N    E+E  ++
Sbjct: 692 SNHWISEGPSMQSTIQHLLQLTNSICHKLSCYQKDKELKGISCQENITNS---EVESKMQ 751

Query: 156 KLAQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIAKVLFERV 210
           +L Q+V QK    NDID  +K TF T+AKS YYAA+ D+ TIN+HIAKVLFE+V
Sbjct: 752 ELVQMVFQKCP--NDIDFNVKNTFFTIAKSFYYAAFCDSRTINFHIAKVLFEKV 800

[Close]

BLAST of CmoCh02G018430 vs. Swiss-Prot
Match: CLDS_CISCR (Copal-8-ol diphosphate hydratase, chloroplastic OS=Cistus creticus subsp. creticus GN=CLS PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.3e-27
Identity = 83/205 (40.49%), Postives = 120/205 (58.54%), Query Frame = 1


Query: 7   NKERIRK--VVDFGICFDRRSGNMQQKGGEGLVGILLRTLTNISLDILVSHGVDITHHLH 66
           N + +RK  V +F   ++RR   M+ KG +  + I+L T  N   ++    G DI  +L 
Sbjct: 618 NSKDLRKAFVQEFKNIYERR---MEAKGTKWNLIIILLTTLNHLTEVC---GRDINSYLC 677

Query: 67  QAWQKWVFKWQEDGDVHKEEAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQL 126
            +W+KW+  W+ +GD +K  AELL  +I L+SG     D LS+  ++KL  L+NK+CHQL
Sbjct: 678 HSWEKWMMMWEPEGDRYKGAAELLSNSINLSSGRLFSNDTLSHPNYEKLVTLSNKLCHQL 737

Query: 127 AHFKKHKLNNGGLYKEKTDNKMPPEIEEDIRKLAQLVIQKSSDGNDIDSPIKQTFLTVAK 186
            + ++      G + E +D K   +IE  +++L QLV Q SSD  DI   +KQTF  V +
Sbjct: 738 GNSRR------GNHNEDSDIK-DTKIEIAMQELVQLVHQNSSD--DISMDLKQTFFAVVR 797

Query: 187 SVYYAAYFDAWTINYHIAKVLFERV 210
           S YYAA+ D  TIN HI KVLFE V
Sbjct: 798 SFYYAAHCDRGTINSHIVKVLFESV 807

[Close]

BLAST of CmoCh02G018430 vs. Swiss-Prot
Match: CLDS_TOBAC (Copal-8-ol diphosphate hydratase, chloroplastic OS=Nicotiana tabacum GN=CPS2 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.1e-22
Identity = 64/170 (37.65%), Postives = 100/170 (58.82%), Query Frame = 1


Query: 40  LLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHKEEAELLVQTIILNSGCS 99
           L + L  +S +     G DI H L  AW+ W+   +E+ +  +EE ELLV+TI L+ G  
Sbjct: 644 LRQFLRQLSEETFEDLGKDIHHQLQNAWETWLVFLREEKNACQEETELLVRTINLSGGYM 703

Query: 100 TLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKTDNKMPPEIEEDIRKLAQ 159
           T +++L ++ ++ LSNLTNKVC +L   +  K+  G     K  N     IE D++ L +
Sbjct: 704 THDEILFDADYENLSNLTNKVCGKLNELQNDKVTGG----SKNTN-----IELDMQALVK 763

Query: 160 LVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIAKVLFERV 210
           LV   +S  ++I+  IKQTF  V K+ YY+A+     +N+HI+KVLF++V
Sbjct: 764 LVFGNTS--SNINQDIKQTFFAVVKTFYYSAHVSEEIMNFHISKVLFQQV 802

[Close]

BLAST of CmoCh02G018430 vs. Swiss-Prot
Match: KSA_ARATH (Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 60/186 (32.26%), Postives = 102/186 (54.84%), Query Frame = 1


Query: 24  RSGNMQQKGGEGLVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHKE 83
           R G++Q      L G+L+ TL  +S D+ +SHG D+ + L+ +W  W+ KW+  GD  + 
Sbjct: 636 RPGSVQ---ASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD--EG 695

Query: 84  EAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKTD 143
           E EL+V+ IIL    + L +  +++ F +L+ + N++C    + K  + +     KEKT 
Sbjct: 696 EGELMVKMIILMKN-NDLTNFFTHTHFVRLAEIINRICLPRQYLKARRNDE----KEKTI 755

Query: 144 NKMPPEIEEDIRKLAQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIAK 203
             M    E+++ K+ +L + +S    D+      TFL VAK+ YY A      +  HI+K
Sbjct: 756 KSM----EKEMGKMVELALSESDTFRDVSI----TFLDVAKAFYYFALCGD-HLQTHISK 802

Query: 204 VLFERV 210
           VLF++V
Sbjct: 816 VLFQKV 802

[Close]

BLAST of CmoCh02G018430 vs. Swiss-Prot
Match: CPS2_ORYSI (Ent-copalyl diphosphate synthase 2 OS=Oryza sativa subsp. indica GN=CPS2 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-12
Identity = 56/153 (36.60%), Postives = 84/153 (54.90%), Query Frame = 1


Query: 63  LHQAWQKWVFKW--QEDGDVHKEEAELLVQTIILNSGC-STLEDLLSNSQ-FQKLSNLTN 122
           L +AW++W+  W  +  G    + A LLV+TI + SG   + E  L NS+ + +L  + +
Sbjct: 655 LREAWKQWLMSWTNESQGSTGGDTALLLVRTIEICSGRHGSAEQSLKNSEDYARLEQIAS 714

Query: 123 KVCHQLAHFKKHKLNNGGLYKEKTDNK--MPPEIEEDIRKLAQLVIQKSSDGNDIDSPIK 182
            +C +LA   K    NGG      DN   +  E++ ++++L Q V   SS  ND+ S  +
Sbjct: 715 SMCSKLA--TKILAQNGG----SMDNVEGIDQEVDVEMKELIQRVYGSSS--NDVSSVTR 774

Query: 183 QTFLTVAKSVYYAAYFDAWTINYHIAKVLFERV 210
           QTFL V KS  Y A+    TI+ HI+KVLFE V
Sbjct: 775 QTFLDVVKSFCYVAHCSPETIDGHISKVLFEDV 799

[Close]

BLAST of CmoCh02G018430 vs. TrEMBL
Match: Q9ZTN7_CUCMA (Copalyl diphosphate synthase 2 OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 4.5e-100
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 24  RSGNMQQKGGEGLVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHKE 83
           RSGNMQQKGGEGLVGILLRTLTNISLDIL+SHGVDITHHLHQAWQKWVFKWQEDGDVHKE
Sbjct: 641 RSGNMQQKGGEGLVGILLRTLTNISLDILLSHGVDITHHLHQAWQKWVFKWQEDGDVHKE 700

Query: 84  EAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKTD 143
           EAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHK+NNG LYKEKTD
Sbjct: 701 EAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKVNNGNLYKEKTD 760

Query: 144 NKMPPEIEEDIRKLAQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIAK 203
           NKMPPEIEEDIRKL QLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIAK
Sbjct: 761 NKMPPEIEEDIRKLVQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIAK 820

Query: 204 VLFERVF 211
           VLFERVF
Sbjct: 821 VLFERVF 827

[Close]

BLAST of CmoCh02G018430 vs. TrEMBL
Match: Q9ZTN8_CUCMA (Copalyl diphosphate synthase 1 OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 4.7e-89
Identity = 164/188 (87.23%), Postives = 176/188 (93.62%), Query Frame = 1


Query: 24  RSGNMQQKGG-EGLVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHK 83
           R+GN+QQKGG +GLVGILLRTLT+ISLDILVSHG DITHHLHQAW+KW+FKWQEDGDVHK
Sbjct: 636 RAGNVQQKGGGQGLVGILLRTLTSISLDILVSHGFDITHHLHQAWEKWLFKWQEDGDVHK 695

Query: 84  EEAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKT 143
           EEAELLV TIILNSGCSTLEDLLSN Q+QKLS LTNKVCHQL HFKKHK+ NGG+YKEKT
Sbjct: 696 EEAELLVGTIILNSGCSTLEDLLSNPQYQKLSYLTNKVCHQLGHFKKHKVTNGGIYKEKT 755

Query: 144 DNKMPPEIEEDIRKLAQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIA 203
           +NKMPPEIEED+RKL Q+VIQ SSDGNDIDSPIK TFLTVAKS YYAAYFD WTINYHIA
Sbjct: 756 ENKMPPEIEEDMRKLLQMVIQNSSDGNDIDSPIKNTFLTVAKSSYYAAYFDPWTINYHIA 815

Query: 204 KVLFERVF 211
           KVLFERVF
Sbjct: 816 KVLFERVF 823

[Close]

BLAST of CmoCh02G018430 vs. TrEMBL
Match: Q84LM0_CUCMA (Copalyl diphosphate synthase OS=Cucurbita maxima GN=CmCPS1 PE=2 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 4.7e-89
Identity = 164/188 (87.23%), Postives = 176/188 (93.62%), Query Frame = 1


Query: 24  RSGNMQQKGG-EGLVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHK 83
           R+GN+QQKGG +GLVGILLRTLT+ISLDILVSHG DITHHLHQAW+KW+FKWQEDGDVHK
Sbjct: 635 RAGNVQQKGGGQGLVGILLRTLTSISLDILVSHGFDITHHLHQAWEKWLFKWQEDGDVHK 694

Query: 84  EEAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKT 143
           EEAELLV TIILNSGCSTLEDLLSN Q+QKLS LTNKVCHQL HFKKHK+ NGG+YKEKT
Sbjct: 695 EEAELLVGTIILNSGCSTLEDLLSNPQYQKLSYLTNKVCHQLGHFKKHKVTNGGIYKEKT 754

Query: 144 DNKMPPEIEEDIRKLAQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIA 203
           +NKMPPEIEED+RKL Q+VIQ SSDGNDIDSPIK TFLTVAKS YYAAYFD WTINYHIA
Sbjct: 755 ENKMPPEIEEDMRKLMQMVIQNSSDGNDIDSPIKNTFLTVAKSSYYAAYFDPWTINYHIA 814

Query: 204 KVLFERVF 211
           KVLFERVF
Sbjct: 815 KVLFERVF 822

[Close]

BLAST of CmoCh02G018430 vs. TrEMBL
Match: A0A0A0KDX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410650 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 7.5e-87
Identity = 161/188 (85.64%), Postives = 174/188 (92.55%), Query Frame = 1


Query: 24  RSGNMQQKGGEGLVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHKE 83
           RS N+QQKGG+GLVGILLRTLTNISLDILVSHG+DITHHLHQAW+KW+FKWQEDGDVHKE
Sbjct: 540 RSSNVQQKGGQGLVGILLRTLTNISLDILVSHGLDITHHLHQAWKKWLFKWQEDGDVHKE 599

Query: 84  EAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKTD 143
           EAELLVQTIILNSGCSTLEDLLSN Q+QKLS LTNKVCHQL HFKKHK+ NGG+YKEKTD
Sbjct: 600 EAELLVQTIILNSGCSTLEDLLSNPQYQKLSYLTNKVCHQLGHFKKHKVTNGGIYKEKTD 659

Query: 144 NKMPPEIEEDIRKLAQLVIQKSSDGND-IDSPIKQTFLTVAKSVYYAAYFDAWTINYHIA 203
           NKMP EIE+D+RKL QLVIQ  SD ND I+S IK TFLTVAKS+YYAAYFD WTINYHIA
Sbjct: 660 NKMPQEIEDDMRKLMQLVIQNPSDSNDIINSQIKHTFLTVAKSLYYAAYFDPWTINYHIA 719

Query: 204 KVLFERVF 211
           KVLFE+VF
Sbjct: 720 KVLFEKVF 727

[Close]

BLAST of CmoCh02G018430 vs. TrEMBL
Match: A0A061DRP6_THECC (Copalyl diphosphate synthase OS=Theobroma cacao GN=TCM_004358 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.9e-43
Identity = 93/174 (53.45%), Postives = 129/174 (74.14%), Query Frame = 1


Query: 36  LVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHKEEAELLVQTIILN 95
           L+  LLRTL ++SLD LV+HG DI+  + +AW+KW+  W E+GD H+  AEL+VQTI L+
Sbjct: 648 LIDTLLRTLNHLSLDALVAHGRDISCSIRRAWEKWMLMWLEEGDRHQGVAELVVQTINLS 707

Query: 96  SGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKTDNKMPPEIEEDIR 155
           SG  +LE+LLS+ Q+++LS+LTN VCHQL H++K K+++ G Y   TDN    +IE D++
Sbjct: 708 SGRWSLEELLSHPQYERLSSLTNTVCHQLCHYQKQKVHDNGCYNTDTDNSRSQKIESDMQ 767

Query: 156 KLAQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIAKVLFERV 210
           +L Q V+Q  SDG  I+  IK TFLTVA+S YYAA+ D  T+ +HIAKVLFE+V
Sbjct: 768 QLVQSVLQHCSDG--INPDIKHTFLTVARSYYYAAHCDLETMTFHIAKVLFEKV 819

[Close]

BLAST of CmoCh02G018430 vs. TAIR10
Match: AT4G02780.1 (AT4G02780.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 9.5e-17
Identity = 60/186 (32.26%), Postives = 102/186 (54.84%), Query Frame = 1


Query: 24  RSGNMQQKGGEGLVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHKE 83
           R G++Q      L G+L+ TL  +S D+ +SHG D+ + L+ +W  W+ KW+  GD  + 
Sbjct: 636 RPGSVQ---ASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD--EG 695

Query: 84  EAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKTD 143
           E EL+V+ IIL    + L +  +++ F +L+ + N++C    + K  + +     KEKT 
Sbjct: 696 EGELMVKMIILMKN-NDLTNFFTHTHFVRLAEIINRICLPRQYLKARRNDE----KEKTI 755

Query: 144 NKMPPEIEEDIRKLAQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIAK 203
             M    E+++ K+ +L + +S    D+      TFL VAK+ YY A      +  HI+K
Sbjct: 756 KSM----EKEMGKMVELALSESDTFRDVSI----TFLDVAKAFYYFALCGD-HLQTHISK 802

Query: 204 VLFERV 210
           VLF++V
Sbjct: 816 VLFQKV 802

[Close]

BLAST of CmoCh02G018430 vs. NCBI nr
Match: gi|4151195|gb|AAD04293.1| (copalyl diphosphate synthase 2 [Cucurbita maxima])

HSP 1 Score: 372.1 bits (954), Expect = 6.5e-100
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 24  RSGNMQQKGGEGLVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHKE 83
           RSGNMQQKGGEGLVGILLRTLTNISLDIL+SHGVDITHHLHQAWQKWVFKWQEDGDVHKE
Sbjct: 641 RSGNMQQKGGEGLVGILLRTLTNISLDILLSHGVDITHHLHQAWQKWVFKWQEDGDVHKE 700

Query: 84  EAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKTD 143
           EAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHK+NNG LYKEKTD
Sbjct: 701 EAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKVNNGNLYKEKTD 760

Query: 144 NKMPPEIEEDIRKLAQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIAK 203
           NKMPPEIEEDIRKL QLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIAK
Sbjct: 761 NKMPPEIEEDIRKLVQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIAK 820

Query: 204 VLFERVF 211
           VLFERVF
Sbjct: 821 VLFERVF 827

[Close]

BLAST of CmoCh02G018430 vs. NCBI nr
Match: gi|30519875|dbj|BAC76429.1| (copalyl diphosphate synthase [Cucurbita maxima])

HSP 1 Score: 335.5 bits (859), Expect = 6.7e-89
Identity = 164/188 (87.23%), Postives = 176/188 (93.62%), Query Frame = 1


Query: 24  RSGNMQQKGG-EGLVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHK 83
           R+GN+QQKGG +GLVGILLRTLT+ISLDILVSHG DITHHLHQAW+KW+FKWQEDGDVHK
Sbjct: 635 RAGNVQQKGGGQGLVGILLRTLTSISLDILVSHGFDITHHLHQAWEKWLFKWQEDGDVHK 694

Query: 84  EEAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKT 143
           EEAELLV TIILNSGCSTLEDLLSN Q+QKLS LTNKVCHQL HFKKHK+ NGG+YKEKT
Sbjct: 695 EEAELLVGTIILNSGCSTLEDLLSNPQYQKLSYLTNKVCHQLGHFKKHKVTNGGIYKEKT 754

Query: 144 DNKMPPEIEEDIRKLAQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIA 203
           +NKMPPEIEED+RKL Q+VIQ SSDGNDIDSPIK TFLTVAKS YYAAYFD WTINYHIA
Sbjct: 755 ENKMPPEIEEDMRKLMQMVIQNSSDGNDIDSPIKNTFLTVAKSSYYAAYFDPWTINYHIA 814

Query: 204 KVLFERVF 211
           KVLFERVF
Sbjct: 815 KVLFERVF 822

[Close]

BLAST of CmoCh02G018430 vs. NCBI nr
Match: gi|4151193|gb|AAD04292.1| (copalyl diphosphate synthase 1 [Cucurbita maxima])

HSP 1 Score: 335.5 bits (859), Expect = 6.7e-89
Identity = 164/188 (87.23%), Postives = 176/188 (93.62%), Query Frame = 1


Query: 24  RSGNMQQKGG-EGLVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHK 83
           R+GN+QQKGG +GLVGILLRTLT+ISLDILVSHG DITHHLHQAW+KW+FKWQEDGDVHK
Sbjct: 636 RAGNVQQKGGGQGLVGILLRTLTSISLDILVSHGFDITHHLHQAWEKWLFKWQEDGDVHK 695

Query: 84  EEAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKT 143
           EEAELLV TIILNSGCSTLEDLLSN Q+QKLS LTNKVCHQL HFKKHK+ NGG+YKEKT
Sbjct: 696 EEAELLVGTIILNSGCSTLEDLLSNPQYQKLSYLTNKVCHQLGHFKKHKVTNGGIYKEKT 755

Query: 144 DNKMPPEIEEDIRKLAQLVIQKSSDGNDIDSPIKQTFLTVAKSVYYAAYFDAWTINYHIA 203
           +NKMPPEIEED+RKL Q+VIQ SSDGNDIDSPIK TFLTVAKS YYAAYFD WTINYHIA
Sbjct: 756 ENKMPPEIEEDMRKLLQMVIQNSSDGNDIDSPIKNTFLTVAKSSYYAAYFDPWTINYHIA 815

Query: 204 KVLFERVF 211
           KVLFERVF
Sbjct: 816 KVLFERVF 823

[Close]

BLAST of CmoCh02G018430 vs. NCBI nr
Match: gi|659098014|ref|XP_008449932.1| (PREDICTED: ent-copalyl diphosphate synthase, chloroplastic, partial [Cucumis melo])

HSP 1 Score: 328.6 bits (841), Expect = 8.2e-87
Identity = 162/188 (86.17%), Postives = 173/188 (92.02%), Query Frame = 1


Query: 24  RSGNMQQKGGEGLVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHKE 83
           RS N+QQKGG+GLVGILLRTLTNISLDILVSHG+DITHHLHQAW+KW+FKWQEDGDVHKE
Sbjct: 663 RSSNVQQKGGQGLVGILLRTLTNISLDILVSHGLDITHHLHQAWKKWLFKWQEDGDVHKE 722

Query: 84  EAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKTD 143
           EAELLVQTIILNSGCSTLEDLLSN Q+ KLS LTNKVCHQL HFKKHK+ NGG+YKEKTD
Sbjct: 723 EAELLVQTIILNSGCSTLEDLLSNPQYLKLSYLTNKVCHQLGHFKKHKVTNGGIYKEKTD 782

Query: 144 NKMPPEIEEDIRKLAQLVIQKSSDGND-IDSPIKQTFLTVAKSVYYAAYFDAWTINYHIA 203
           NKMP EIEED+RKL QLVIQ  SD ND IDS IK TFLTVAKS+YYAAYFD WTINYHIA
Sbjct: 783 NKMPQEIEEDMRKLMQLVIQNPSDSNDIIDSQIKHTFLTVAKSLYYAAYFDPWTINYHIA 842

Query: 204 KVLFERVF 211
           KVLFE+VF
Sbjct: 843 KVLFEKVF 850

[Close]

BLAST of CmoCh02G018430 vs. NCBI nr
Match: gi|778722300|ref|XP_011658455.1| (PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 1.1e-86
Identity = 161/188 (85.64%), Postives = 174/188 (92.55%), Query Frame = 1


Query: 24  RSGNMQQKGGEGLVGILLRTLTNISLDILVSHGVDITHHLHQAWQKWVFKWQEDGDVHKE 83
           RS N+QQKGG+GLVGILLRTLTNISLDILVSHG+DITHHLHQAW+KW+FKWQEDGDVHKE
Sbjct: 673 RSSNVQQKGGQGLVGILLRTLTNISLDILVSHGLDITHHLHQAWKKWLFKWQEDGDVHKE 732

Query: 84  EAELLVQTIILNSGCSTLEDLLSNSQFQKLSNLTNKVCHQLAHFKKHKLNNGGLYKEKTD 143
           EAELLVQTIILNSGCSTLEDLLSN Q+QKLS LTNKVCHQL HFKKHK+ NGG+YKEKTD
Sbjct: 733 EAELLVQTIILNSGCSTLEDLLSNPQYQKLSYLTNKVCHQLGHFKKHKVTNGGIYKEKTD 792

Query: 144 NKMPPEIEEDIRKLAQLVIQKSSDGND-IDSPIKQTFLTVAKSVYYAAYFDAWTINYHIA 203
           NKMP EIE+D+RKL QLVIQ  SD ND I+S IK TFLTVAKS+YYAAYFD WTINYHIA
Sbjct: 793 NKMPQEIEDDMRKLMQLVIQNPSDSNDIINSQIKHTFLTVAKSLYYAAYFDPWTINYHIA 852

Query: 204 KVLFERVF 211
           KVLFE+VF
Sbjct: 853 KVLFEKVF 860

The following BLAST results are available for this feature:

BLAST of CmoCh02G018430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KSA_PEA	8.3e-31	44.83	Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1	[more]
CLDS_CISCR	7.3e-27	40.49	Copal-8-ol diphosphate hydratase, chloroplastic OS=Cistus creticus subsp. cretic...	[more]
CLDS_TOBAC	7.1e-22	37.65	Copal-8-ol diphosphate hydratase, chloroplastic OS=Nicotiana tabacum GN=CPS2 PE=...	[more]
KSA_ARATH	1.7e-15	32.26	Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 P...	[more]
CPS2_ORYSI	5.1e-12	36.60	Ent-copalyl diphosphate synthase 2 OS=Oryza sativa subsp. indica GN=CPS2 PE=2 SV...	[more]

BLAST of CmoCh02G018430 vs. TrEMBL


Match Name	E-value	Identity	Description
Q9ZTN7_CUCMA	4.5e-100	97.86	Copalyl diphosphate synthase 2 OS=Cucurbita maxima PE=2 SV=1	[more]
Q9ZTN8_CUCMA	4.7e-89	87.23	Copalyl diphosphate synthase 1 OS=Cucurbita maxima PE=2 SV=1	[more]
Q84LM0_CUCMA	4.7e-89	87.23	Copalyl diphosphate synthase OS=Cucurbita maxima GN=CmCPS1 PE=2 SV=1	[more]
A0A0A0KDX5_CUCSA	7.5e-87	85.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410650 PE=3 SV=1	[more]
A0A061DRP6_THECC	3.9e-43	53.45	Copalyl diphosphate synthase OS=Theobroma cacao GN=TCM_004358 PE=3 SV=1	[more]

BLAST of CmoCh02G018430 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02780.1	9.5e-17	32.26	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]

BLAST of CmoCh02G018430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|4151195\|gb\|AAD04293.1\|	6.5e-100	97.86	copalyl diphosphate synthase 2 [Cucurbita maxima]	[more]
gi\|30519875\|dbj\|BAC76429.1\|	6.7e-89	87.23	copalyl diphosphate synthase [Cucurbita maxima]	[more]
gi\|4151193\|gb\|AAD04292.1\|	6.7e-89	87.23	copalyl diphosphate synthase 1 [Cucurbita maxima]	[more]
gi\|659098014\|ref\|XP_008449932.1\|	8.2e-87	86.17	PREDICTED: ent-copalyl diphosphate synthase, chloroplastic, partial [Cucumis mel...	[more]
gi\|778722300\|ref\|XP_011658455.1\|	1.1e-86	85.64	PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008949	Isoprenoid_synthase_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0010333	terpene synthase activity
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G018430.1	CmoCh02G018430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008949	Isoprenoid synthase domain	GENE3D	G3DSA:1.10.600.10		coord: 35..209 score: 3.4
None	No IPR available	PANTHER	PTHR31739	FAMILY NOT NAMED	coord: 21..209 score: 7.3
None	No IPR available	PANTHER	PTHR31739:SF4	ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC	coord: 21..209 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G018430	CmaCh19G000350	Cucurbita maxima (Rimu)	cmacmoB521
CmoCh02G018430	CmaCh02G017970	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G018430	Cla006048	Watermelon (97103) v1	cmowmB551
CmoCh02G018430	ClCG07G000310	Watermelon (Charleston Gray)	cmowcgB566
CmoCh02G018430	Lsi05G009380	Bottle gourd (USVL1VR-Ls)	cmolsiB565
CmoCh02G018430	Cp4.1LG05g01790	Cucurbita pepo (Zucchini)	cmocpeB596
CmoCh02G018430	Cp4.1LG15g00390	Cucurbita pepo (Zucchini)	cmocpeB561
CmoCh02G018430	Cla97C07G128590	Watermelon (97103) v2	cmowmbB631
CmoCh02G018430	Bhi05G000235	Wax gourd	cmowgoB0725
CmoCh02G018430	Carg28054	Silver-seed gourd	carcmoB0801
CmoCh02G018430	Carg16837	Silver-seed gourd	carcmoB1022

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G018430	CmoCh19G000340	Cucurbita moschata (Rifu)	cmocmoB384

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G018430	Cucumber (Gy14) v2	cgybcmoB797
CmoCh02G018430	Cucumber (Gy14) v2	cgybcmoB806
CmoCh02G018430	Melon (DHL92) v3.6.1	cmomedB645
CmoCh02G018430	Melon (DHL92) v3.6.1	cmomedB646
CmoCh02G018430	Silver-seed gourd	carcmoB1023
CmoCh02G018430	Cucumber (Chinese Long) v3	cmocucB0739
CmoCh02G018430	Cucumber (Chinese Long) v3	cmocucB0751
CmoCh02G018430	Cucurbita moschata (Rifu)	cmocmoB387
CmoCh02G018430	Cucumber (Gy14) v1	cgycmoB0534
CmoCh02G018430	Cucurbita maxima (Rimu)	cmacmoB523
CmoCh02G018430	Wild cucumber (PI 183967)	cmocpiB625
CmoCh02G018430	Wild cucumber (PI 183967)	cmocpiB635
CmoCh02G018430	Cucumber (Chinese Long) v2	cmocuB618
CmoCh02G018430	Cucumber (Chinese Long) v2	cmocuB627
CmoCh02G018430	Melon (DHL92) v3.5.1	cmomeB564
CmoCh02G018430	Melon (DHL92) v3.5.1	cmomeB565
CmoCh02G018430	Cucurbita pepo (Zucchini)	cmocpeB564