CmoCh02G017870 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G017870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionProtein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
LocationCmo_Chr02 : 10177243 .. 10177800 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCATCACTGAATTTGAAGGCCTCAACGCCCAACAATTTGGAGCCTCCAGTGTTCCAAATTTAGGTGGTGGGTCTTCGTCCTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCAAACAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTGAAAAATCACCGACCCCCTCTTGCCCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGGTATTTGGACCAATTTGGTAAGACCAAAGTCCACACTCCGATCTGCCCTTTCTACGGCCATCCCAACCCTCCAGCCCCATGTCCCTGCCCTCTACGCCAAGCATGGGGCAGCCTGGATGCTCTTATTGGCCGCCTTCGTGCAGCCTTTGAAGAGAACGGTGGGATGCCCGAAGCTAACCCTTTTGGTGCCCGTGCTATTAGGCTTTATCTTCGAGAGGTTCGTGATGTGCAGTCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAACGAAAGCGCCCTCAACAACAAATCCTTCCACCTCCCACAGGAGCTTAA

mRNA sequence

ATGGATTCCATCACTGAATTTGAAGGCCTCAACGCCCAACAATTTGGAGCCTCCAGTGTTCCAAATTTAGGTGGTGGGTCTTCGTCCTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCAAACAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTGAAAAATCACCGACCCCCTCTTGCCCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGGTATTTGGACCAATTTGGTAAGACCAAAGTCCACACTCCGATCTGCCCTTTCTACGGCCATCCCAACCCTCCAGCCCCATGTCCCTGCCCTCTACGCCAAGCATGGGGCAGCCTGGATGCTCTTATTGGCCGCCTTCGTGCAGCCTTTGAAGAGAACGGTGGGATGCCCGAAGCTAACCCTTTTGGTGCCCGTGCTATTAGGCTTTATCTTCGAGAGGTTCGTGATGTGCAGTCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAACGAAAGCGCCCTCAACAACAAATCCTTCCACCTCCCACAGGAGCTTAA

Coding sequence (CDS)

ATGGATTCCATCACTGAATTTGAAGGCCTCAACGCCCAACAATTTGGAGCCTCCAGTGTTCCAAATTTAGGTGGTGGGTCTTCGTCCTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCAAACAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTGAAAAATCACCGACCCCCTCTTGCCCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGGTATTTGGACCAATTTGGTAAGACCAAAGTCCACACTCCGATCTGCCCTTTCTACGGCCATCCCAACCCTCCAGCCCCATGTCCCTGCCCTCTACGCCAAGCATGGGGCAGCCTGGATGCTCTTATTGGCCGCCTTCGTGCAGCCTTTGAAGAGAACGGTGGGATGCCCGAAGCTAACCCTTTTGGTGCCCGTGCTATTAGGCTTTATCTTCGAGAGGTTCGTGATGTGCAGTCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAACGAAAGCGCCCTCAACAACAAATCCTTCCACCTCCCACAGGAGCTTAA
Homology
[Close]
BLAST of CmoCh02G017870 vs. Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.9e-71
Identity = 137/166 (82.53%), Postives = 146/166 (87.95%), Query Frame = 1 

Query: 10  LNAQQFGASSVPNLGGGSSSSSSSSSSSSSSNS-RYENQKRRDWNTFCQYLKNHRPPLAL 69
           LN     +SSV    GG ++   SSSSS S+NS RYENQKRRDWNTF QYL+NHRPPL+L
Sbjct: 20  LNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSL 79

Query: 70  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 129
           SRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRA
Sbjct: 80  SRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 139

Query: 130 AFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRP 175
           AFEENGG PE NPFGARA+RLYLREVRD+QSKARG+SYEKKKRKRP
Sbjct: 140 AFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]
BLAST of CmoCh02G017870 vs. Swiss-Prot
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.8e-70
Identity = 134/187 (71.66%), Postives = 149/187 (79.68%), Query Frame = 1 

Query: 7   FEGLNAQQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPL 66
           F G  +   GA +    GGG  S SSSS S S    RYE+QKRRDWNTF QYL+NHRPPL
Sbjct: 48  FSGAGSSSSGAGTSAGGGGGGPSPSSSSPSLS----RYESQKRRDWNTFGQYLRNHRPPL 107

Query: 67  ALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRL 126
           +LSRCSGAHVLEFL+Y+DQFGKTKVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 108 SLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRL 167

Query: 127 RAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKR---------PQQQ 185
           RAA+EENGG PE NPFGARA+RLYLREVR+ Q++ARGISYEKKKRK+         P  +
Sbjct: 168 RAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYEKKKRKKPSSAGAGAGPSSE 227

[Close]
BLAST of CmoCh02G017870 vs. Swiss-Prot
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.8e-70
Identity = 134/187 (71.66%), Postives = 149/187 (79.68%), Query Frame = 1 

Query: 7   FEGLNAQQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPL 66
           F G  +   GA +    GGG  S SSSS S S    RYE+QKRRDWNTF QYL+NHRPPL
Sbjct: 48  FSGAGSSSSGAGTSAGGGGGGPSPSSSSPSLS----RYESQKRRDWNTFGQYLRNHRPPL 107

Query: 67  ALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRL 126
           +LSRCSGAHVLEFL+Y+DQFGKTKVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 108 SLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRL 167

Query: 127 RAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKR---------PQQQ 185
           RAA+EENGG PE NPFGARA+RLYLREVR+ Q++ARGISYEKKKRK+         P  +
Sbjct: 168 RAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYEKKKRKKPSSAGAGAGPSSE 227

[Close]
BLAST of CmoCh02G017870 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.1e-70
Identity = 139/187 (74.33%), Postives = 149/187 (79.68%), Query Frame = 1 

Query: 1   MDSITEFEGL-----NAQQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTF 60
           MD I  F G      N     A++       SSSSSSS  S ++  SRYENQKRRDWNTF
Sbjct: 1   MDHIIGFMGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTF 60

Query: 61  CQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQA 120
            QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CPLRQA
Sbjct: 61  GQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQ 180
           WGSLDALIGRLRAAFEENGG PE NPFGARA+RLYLREVRD Q+KARGISYEKKKRKRP 
Sbjct: 121 WGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP- 180

Query: 181 QQILPPP 183
               PPP
Sbjct: 181 ----PPP 182

[Close]
BLAST of CmoCh02G017870 vs. Swiss-Prot
Match: G1L4_ORYSJ (Protein G1-like4 OS=Oryza sativa subsp. japonica GN=G1L4 PE=1 SV=2)

HSP 1 Score: 259.6 bits (662), Expect = 2.6e-68
Identity = 133/185 (71.89%), Postives = 149/185 (80.54%), Query Frame = 1 

Query: 22  NLGGGSSSSSSSSSSSSS----SNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVL 81
           N GGG SSSS+SS S  +    S SRYE QKRRDWNTF QYL+NHRPPL+L++CSGAHVL
Sbjct: 16  NGGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVL 75

Query: 82  EFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMP 141
           EFLRYLDQFGKTKVHT  CPF+GHP+PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG P
Sbjct: 76  EFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRP 135

Query: 142 EANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQQIL-----------------P 186
           E+NPF ARA+RLYLREVR+ Q++ARG+SYEKKKRK+PQQQ L                 P
Sbjct: 136 ESNPFAARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQLQGGDSSGLHGHQHHPPPP 195

[Close]
BLAST of CmoCh02G017870 vs. TrEMBL
Match: A0A0A0LB62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383780 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 8.6e-79
Identity = 157/181 (86.74%), Postives = 161/181 (88.95%), Query Frame = 1 

Query: 1   MDSI-TEFEGLNA---QQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFC 60
           MDSI +EFE LN    Q FG     N        SSSSSSSSSS+SRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQ 178
           GSLDALIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

[Close]
BLAST of CmoCh02G017870 vs. TrEMBL
Match: A0A061DNN8_THECC (IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.7e-77
Identity = 153/188 (81.38%), Postives = 164/188 (87.23%), Query Frame = 1 

Query: 1   MDSITEFEGLNAQQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60
           MDSI E +  N++   AS   +  G +S +SSSS SSSS++SRYENQKRRDWNTF QYLK
Sbjct: 1   MDSIREMDSSNSEN--ASLNVSNNGTASLASSSSPSSSSTSSRYENQKRRDWNTFGQYLK 60

Query: 61  NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 ALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQQ--- 180
           ALIGRLRAAFEENGG PEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRP  Q   
Sbjct: 121 ALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPAQQIP 180

Query: 181 ILPPPTGA 186
            LPPP GA
Sbjct: 181 TLPPPPGA 186

[Close]
BLAST of CmoCh02G017870 vs. TrEMBL
Match: B9GS06_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03860g PE=4 SV=2)

HSP 1 Score: 295.0 bits (754), Expect = 6.2e-77
Identity = 152/194 (78.35%), Postives = 165/194 (85.05%), Query Frame = 1 

Query: 1   MDSITEFEGLNAQQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60
           M+SI E E  N++    +++ N     S S+SSS SSS++ SRYENQKRRDWNTF QYLK
Sbjct: 1   MNSIPEMENSNSENISFNNIGNSPTAMSVSNSSSPSSSTAPSRYENQKRRDWNTFGQYLK 60

Query: 61  NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 ALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKR-PQQQI- 180
           ALIGRLRAAFEENGG PEANPFGARA+RLYLREVRD+QSKARG+SYEKKKRKR PQQQI 
Sbjct: 121 ALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGVSYEKKKRKRPPQQQIQ 180

Query: 181 -------LPPPTGA 186
                  LPPP GA
Sbjct: 181 SLPLPLPLPPPPGA 194

[Close]
BLAST of CmoCh02G017870 vs. TrEMBL
Match: A0A0D2QFS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G178100 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 8.9e-76
Identity = 150/192 (78.12%), Postives = 159/192 (82.81%), Query Frame = 1 

Query: 1   MDSITEFEGLNAQQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60
           MDSI E +  N++     +V N GG S  SSSSS +SS    RYENQKRRDWNTF QYLK
Sbjct: 1   MDSIRETDSSNSENVSLINVSNNGGTSLPSSSSSPTSS----RYENQKRRDWNTFGQYLK 60

Query: 61  NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPP PCPCPLRQAWGSLD
Sbjct: 61  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPVPCPCPLRQAWGSLD 120

Query: 121 ALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQQIL- 180
           ALIGRLRAAFEENGG PE NPFGARA+RLYLREVRD+QSKARGISYEKKKRKRP  Q + 
Sbjct: 121 ALIGRLRAAFEENGGKPEVNPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPAQQIP 180

Query: 181 ------PPPTGA 186
                 PPPTGA
Sbjct: 181 TLPLPPPPPTGA 188

[Close]
BLAST of CmoCh02G017870 vs. TrEMBL
Match: F6HZL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03530 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.5e-75
Identity = 148/187 (79.14%), Postives = 163/187 (87.17%), Query Frame = 1 

Query: 1   MDSITEFEGLNAQQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60
           MDSI E +  N++    ++  N     SS+++SSSS+S++ SRYENQKRRDWNTF QYLK
Sbjct: 1   MDSIPEMDSSNSENTSINTSSN-----SSAATSSSSASTTPSRYENQKRRDWNTFGQYLK 60

Query: 61  NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 ALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQQILP 180
           ALIGRLRAAFEENGG PEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKR  QQ+ P
Sbjct: 121 ALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRLPQQMPP 180

Query: 181 --PPTGA 186
             PP GA
Sbjct: 181 QLPPPGA 182

[Close]
BLAST of CmoCh02G017870 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-72
Identity = 137/166 (82.53%), Postives = 146/166 (87.95%), Query Frame = 1 

Query: 10  LNAQQFGASSVPNLGGGSSSSSSSSSSSSSSNS-RYENQKRRDWNTFCQYLKNHRPPLAL 69
           LN     +SSV    GG ++   SSSSS S+NS RYENQKRRDWNTF QYL+NHRPPL+L
Sbjct: 20  LNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSL 79

Query: 70  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 129
           SRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRA
Sbjct: 80  SRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 139

Query: 130 AFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRP 175
           AFEENGG PE NPFGARA+RLYLREVRD+QSKARG+SYEKKKRKRP
Sbjct: 140 AFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]
BLAST of CmoCh02G017870 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-71
Identity = 139/187 (74.33%), Postives = 149/187 (79.68%), Query Frame = 1 

Query: 1   MDSITEFEGL-----NAQQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTF 60
           MD I  F G      N     A++       SSSSSSS  S ++  SRYENQKRRDWNTF
Sbjct: 1   MDHIIGFMGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTF 60

Query: 61  CQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQA 120
            QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CPLRQA
Sbjct: 61  GQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQ 180
           WGSLDALIGRLRAAFEENGG PE NPFGARA+RLYLREVRD Q+KARGISYEKKKRKRP 
Sbjct: 121 WGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP- 180

Query: 181 QQILPPP 183
               PPP
Sbjct: 181 ----PPP 182

[Close]
BLAST of CmoCh02G017870 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 241.1 bits (614), Expect = 5.3e-64
Identity = 117/157 (74.52%), Postives = 136/157 (86.62%), Query Frame = 1 

Query: 27  SSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQF 86
           + + +SS+  +  S+SRYENQKRRDWNTFCQYL+NHRPPL+L  CSGAHVLEFLRYLDQF
Sbjct: 9   NKNPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQF 68

Query: 87  GKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARA 146
           GKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RA
Sbjct: 69  GKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRA 128

Query: 147 IRLYLREVRDVQSKARGISYEKKKRK--RPQQQILPP 182
           +RL+LREVRD Q+KARG+SYEKK+++  R + Q  PP
Sbjct: 129 VRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQPP 165

[Close]
BLAST of CmoCh02G017870 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-62
Identity = 111/151 (73.51%), Postives = 133/151 (88.08%), Query Frame = 1 

Query: 28  SSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFG 87
           S+ + SS SS  S+SRYENQKRRDWNTFCQYL+NH PPL+L+ CSGAHVL+FLRYLDQFG
Sbjct: 18  STQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFG 77

Query: 88  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAI 147
           KTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE +PFG+R++
Sbjct: 78  KTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSV 137

Query: 148 RLYLREVRDVQSKARGISYEKKKRKRPQQQI 179
           R++LREVRD Q+K+RG+SYEKK+++   +QI
Sbjct: 138 RIFLREVRDFQAKSRGVSYEKKRKRVNNKQI 168

[Close]
BLAST of CmoCh02G017870 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 234.6 bits (597), Expect = 5.0e-62
Identity = 111/149 (74.50%), Postives = 128/149 (85.91%), Query Frame = 1 

Query: 26  GSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQ 85
           G     S  SS  ++ SRYE+QKRRDWNTF QYLKNH+PPLALSRCSGAHV+EFL+YLDQ
Sbjct: 14  GDDPGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQ 73

Query: 86  FGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGAR 145
           FGKTKVH   CP++GH  PP+PC CPL+QAWGSLDALIGRLRAA+EENGG P++NPF AR
Sbjct: 74  FGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAAR 133

Query: 146 AIRLYLREVRDVQSKARGISYEKKKRKRP 175
           A+R+YLREVR+ Q+KARGI YEKKKRKRP
Sbjct: 134 AVRIYLREVRESQAKARGIPYEKKKRKRP 162

[Close]
BLAST of CmoCh02G017870 vs. NCBI nr
Match: gi|700202769|gb|KGN57902.1| (hypothetical protein Csa_3G383780 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 1.2e-78
Identity = 157/181 (86.74%), Postives = 161/181 (88.95%), Query Frame = 1 

Query: 1   MDSI-TEFEGLNA---QQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFC 60
           MDSI +EFE LN    Q FG     N        SSSSSSSSSS+SRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQ 178
           GSLDALIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

[Close]
BLAST of CmoCh02G017870 vs. NCBI nr
Match: gi|778681005|ref|XP_011651439.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 1.2e-78
Identity = 157/181 (86.74%), Postives = 161/181 (88.95%), Query Frame = 1 

Query: 1   MDSI-TEFEGLNA---QQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFC 60
           MDSI +EFE LN    Q FG     N        SSSSSSSSSS+SRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQ 178
           GSLDALIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

[Close]
BLAST of CmoCh02G017870 vs. NCBI nr
Match: gi|778681002|ref|XP_004152052.2| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 1.2e-78
Identity = 157/181 (86.74%), Postives = 161/181 (88.95%), Query Frame = 1 

Query: 1   MDSI-TEFEGLNA---QQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFC 60
           MDSI +EFE LN    Q FG     N        SSSSSSSSSS+SRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQ 178
           GSLDALIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

[Close]
BLAST of CmoCh02G017870 vs. NCBI nr
Match: gi|659093194|ref|XP_008447416.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo])

HSP 1 Score: 299.7 bits (766), Expect = 3.6e-78
Identity = 156/181 (86.19%), Postives = 160/181 (88.40%), Query Frame = 1 

Query: 1   MDSI-TEFEGLNAQQ---FGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFC 60
           MDSI +EFE LN      FG     N        SSSSSSSSSS+SRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQ 178
           GSLDALIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

[Close]
BLAST of CmoCh02G017870 vs. NCBI nr
Match: gi|743850764|ref|XP_011028817.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Populus euphratica])

HSP 1 Score: 295.8 bits (756), Expect = 5.2e-77
Identity = 152/192 (79.17%), Postives = 165/192 (85.94%), Query Frame = 1 

Query: 1   MDSITEFEGLNAQQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60
           M+SI E E  N++    +++ N     S S+SSS SSS++ SRYENQKRRDWNTF QYLK
Sbjct: 1   MNSIPEMESSNSENISFNNIGNSPTAMSVSNSSSPSSSTAPSRYENQKRRDWNTFGQYLK 60

Query: 61  NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 ALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKR-PQQQI- 180
           ALIGRLRAAFEENGG PEANPFGARA+RLYLREVRD+QSKARG+SYEKKKRKR PQQQI 
Sbjct: 121 ALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGVSYEKKKRKRPPQQQIQ 180

Query: 181 -----LPPPTGA 186
                LPPP GA
Sbjct: 181 SLPLPLPPPPGA 192

The following BLAST results are available for this feature:
BLAST of CmoCh02G017870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSH3_ARATH1.9e-7182.53Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 ... [more]
G1L6_ORYSI2.8e-7071.66Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1[more]
G1L6_ORYSJ2.8e-7071.66Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1[more]
LSH4_ARATH6.1e-7074.33Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ... [more]
G1L4_ORYSJ2.6e-6871.89Protein G1-like4 OS=Oryza sativa subsp. japonica GN=G1L4 PE=1 SV=2[more]
BLAST of CmoCh02G017870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB62_CUCSA8.6e-7986.74Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383780 PE=4 SV=1[more]
A0A061DNN8_THECC4.7e-7781.38IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 P... [more]
B9GS06_POPTR6.2e-7778.35Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03860g PE=4 SV=2[more]
A0A0D2QFS1_GOSRA8.9e-7678.13Uncharacterized protein OS=Gossypium raimondii GN=B456_001G178100 PE=4 SV=1[more]
F6HZL1_VITVI1.5e-7579.14Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03530 PE=4 SV=... [more]
BLAST of CmoCh02G017870 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G31160.11.1e-7282.53 Protein of unknown function (DUF640)[more]
AT3G23290.23.5e-7174.33 Protein of unknown function (DUF640)[more]
AT5G28490.15.3e-6474.52 Protein of unknown function (DUF640)[more]
AT3G04510.11.3e-6273.51 Protein of unknown function (DUF640)[more]
AT1G07090.15.0e-6274.50 Protein of unknown function (DUF640)[more]
BLAST of CmoCh02G017870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202769|gb|KGN57902.1|1.2e-7886.74hypothetical protein Csa_3G383780 [Cucumis sativus][more]
gi|778681005|ref|XP_011651439.1|1.2e-7886.74PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativu... [more]
gi|778681002|ref|XP_004152052.2|1.2e-7886.74PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativu... [more]
gi|659093194|ref|XP_008447416.1|3.6e-7886.19PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo][more]
gi|743850764|ref|XP_011028817.1|5.2e-7779.17PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006936ALOG_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010492 maintenance of shoot apical meristem identity
biological_process GO:0010199 organ boundary specification between lateral organs and the meristem
biological_process GO:0048441 petal development
biological_process GO:0009886 post-embryonic animal morphogenesis
biological_process GO:0048834 specification of petal number
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G017870.1CmoCh02G017870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 36..156
score: 1.2
IPR006936ALOG domainPROFILEPS51697ALOGcoord: 43..170
score: 84
NoneNo IPR availablePANTHERPTHR31165FAMILY NOT NAMEDcoord: 27..177
score: 3.8E
NoneNo IPR availablePANTHERPTHR31165:SF13PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATEDcoord: 27..177
score: 3.8E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G017870Cucurbita moschata (Rifu)cmocmoB213
CmoCh02G017870Cucurbita moschata (Rifu)cmocmoB303
CmoCh02G017870Cucurbita moschata (Rifu)cmocmoB387
CmoCh02G017870Cucurbita moschata (Rifu)cmocmoB437
CmoCh02G017870Cucurbita moschata (Rifu)cmocmoB446
CmoCh02G017870Cucumber (Gy14) v1cgycmoB0060
CmoCh02G017870Cucumber (Gy14) v1cgycmoB0713
CmoCh02G017870Cucumber (Gy14) v1cgycmoB1057
CmoCh02G017870Cucurbita maxima (Rimu)cmacmoB359
CmoCh02G017870Cucurbita maxima (Rimu)cmacmoB523
CmoCh02G017870Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G017870Cucurbita maxima (Rimu)cmacmoB819
CmoCh02G017870Cucurbita maxima (Rimu)cmacmoB909
CmoCh02G017870Wild cucumber (PI 183967)cmocpiB580
CmoCh02G017870Wild cucumber (PI 183967)cmocpiB587
CmoCh02G017870Wild cucumber (PI 183967)cmocpiB588
CmoCh02G017870Cucumber (Chinese Long) v2cmocuB576
CmoCh02G017870Cucumber (Chinese Long) v2cmocuB582
CmoCh02G017870Cucumber (Chinese Long) v2cmocuB585
CmoCh02G017870Melon (DHL92) v3.5.1cmomeB557
CmoCh02G017870Melon (DHL92) v3.5.1cmomeB568
CmoCh02G017870Watermelon (Charleston Gray)cmowcgB558
CmoCh02G017870Watermelon (Charleston Gray)cmowcgB562
CmoCh02G017870Watermelon (Charleston Gray)cmowcgB566
CmoCh02G017870Watermelon (97103) v1cmowmB551
CmoCh02G017870Watermelon (97103) v1cmowmB559
CmoCh02G017870Watermelon (97103) v1cmowmB604
CmoCh02G017870Cucurbita pepo (Zucchini)cmocpeB549
CmoCh02G017870Cucurbita pepo (Zucchini)cmocpeB564
CmoCh02G017870Cucurbita pepo (Zucchini)cmocpeB580
CmoCh02G017870Cucurbita pepo (Zucchini)cmocpeB590
CmoCh02G017870Cucurbita pepo (Zucchini)cmocpeB596
CmoCh02G017870Cucurbita pepo (Zucchini)cmocpeB599
CmoCh02G017870Bottle gourd (USVL1VR-Ls)cmolsiB518
CmoCh02G017870Bottle gourd (USVL1VR-Ls)cmolsiB565
CmoCh02G017870Bottle gourd (USVL1VR-Ls)cmolsiB566
CmoCh02G017870Cucumber (Gy14) v2cgybcmoB219
CmoCh02G017870Cucumber (Gy14) v2cgybcmoB362
CmoCh02G017870Cucumber (Gy14) v2cgybcmoB363
CmoCh02G017870Melon (DHL92) v3.6.1cmomedB636
CmoCh02G017870Melon (DHL92) v3.6.1cmomedB644
CmoCh02G017870Melon (DHL92) v3.6.1cmomedB647
CmoCh02G017870Melon (DHL92) v3.6.1cmomedB648
CmoCh02G017870Silver-seed gourdcarcmoB0321
CmoCh02G017870Silver-seed gourdcarcmoB1023
CmoCh02G017870Silver-seed gourdcarcmoB1057
CmoCh02G017870Silver-seed gourdcarcmoB1287
CmoCh02G017870Silver-seed gourdcarcmoB1450
CmoCh02G017870Cucumber (Chinese Long) v3cmocucB0683
CmoCh02G017870Cucumber (Chinese Long) v3cmocucB0686
CmoCh02G017870Cucumber (Chinese Long) v3cmocucB0695
CmoCh02G017870Cucumber (Chinese Long) v3cmocucB0696
CmoCh02G017870Watermelon (97103) v2cmowmbB622
CmoCh02G017870Watermelon (97103) v2cmowmbB627
CmoCh02G017870Watermelon (97103) v2cmowmbB631
CmoCh02G017870Wax gourdcmowgoB0709
CmoCh02G017870Wax gourdcmowgoB0718
CmoCh02G017870Wax gourdcmowgoB0725