CmoCh02G012280 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G012280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Outer envelope protein 61
Location	Cmo_Chr02 : 7386428 .. 7388086 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGCTTATAGATCATTTCAGAGATTTGTTTCAAATGCTGATCCCAATACTCTAGCTGCAATGAGCTTTGGGAAACCTGGAGAGGTATCTCCAGACATGATTGCCACTGCCTCAAATATGATCAGCAAGATGTCTCCAGATGAACTTCAAGAGGTTCTTAAATTGGCTTCTTCTTTCCAAGAGGCAAATCCCCTCAAGGGAAACGGTTTTGGTCCAAATTTGGATAATCCGAACATGACTCCTGAATTAGTCAATACAGCTAGTCGTATAATGAGTAGTATGCCACCTGATGACGTACAAAAGATGTTTGAAATTGCATCATCTTTGAAAAGAAGTGACAACATACCAGGTTCTGATACTCGATCAAATTATTTTGAGAGTCACCAATCCAATATCAGCGGAAGTAGTAATATGAACAACACTAGTTCTTATGGAGCGGTTTCAAATTGTTCTTCCAACTCAACTATTCCAACCTCTTCTGATATGCAAGAACAAATGCGAAATCAAATGAAAAATCCGGCCATGCAGCAGGTTTGTAAATCTCAGCCACTAAAAACAATATAATATCTGAATAGTAACACATTAGAAATTGTTTCATCTTTTATTAGTTTAATTGTTTGAGTTCATTGATGCAATTGATTATGCTACATGAAGTCAAGGTGAGAGGCTCTCTCATTTTTGGTAATGAACAAGGCATGACATGCCTCCAAAAAAGCTGCTGCTTTTCAGAAGATATTGTACGGCAACCTTTGTGCAAATGGTTTCTTTTGATTGTTTTCCAAGCAAAAACTGCATAAAAAAAATTAATATAGAAGAAAAGATCGAGGGGATGGTGACTTTTGTAGGATGAGATAGGGGATTTACCTACTTACGATTGTTGGATTTACCTACTTACCATTGTTGTATATTTGAAAGAGGTTGACCTCCTTGCTACGTGCTGTTAGAAGCTTCCATGTTTCCTTGATAGATACTATACTTTGCTCAGTCTTAATGGGGTCCGTTTTGTTAATCCTGTTAGATGTTCACATCAATGATAAAGAATATGAGTCCAGAAATGATGGCAAACATGAGCGAACAATTTGGTGTGAAGCTTTCTCCAGAGGATGCAGCAAAAGCTCAGGAAGCAATATCATCTCTCTCACCACAGGATTTGGATAAAATGGTACGACACAGTTCTTCTCTTCCTCTGCAGTTTTGATAAGAACTATTTTCTTACAAAATCCTGACTTTTTGGTTTTCCCTGAACTGACATGACTGCAGATGCGGTGGGCAGACAAGATTCAGAAAGGCGTAGAAGGTGGAAAGAAGGCAAAGAATTGGCTACTGGGACGTCCTGGTATGATCTTAGCAATATGCATGCTGATATTGGCAGTGATTCTTCATAGGTTTGGAATAGTGGGTGGCTGAGATTTACATTTTGTACCAACTGCCGACACCCTCAACTCTGTACTAAAATATTGGTCCAGACGTGCATCTTTTTAAATTATTAACCATTTTGTACCCCCCATACCATATGGATAAAGCTACTACTATGATTAGTTGAATTCTTTCAATATATCAATTTCTTATACATATCTACTCTGATTTATGAACTAAACATCTGGATGTAACTTTCTCTGAAAATAAAACTCGTAGTATACTATAGTATAGGTGTGA

mRNA sequence

ATGCTTGCTTATAGATCATTTCAGAGATTTGTTTCAAATGCTGATCCCAATACTCTAGCTGCAATGAGCTTTGGGAAACCTGGAGAGGTATCTCCAGACATGATTGCCACTGCCTCAAATATGATCAGCAAGATGTCTCCAGATGAACTTCAAGAGAATATGAGTCCAGAAATGATGGCAAACATGAGCGAACAATTTGGTGTGAAGCTTTCTCCAGAGGATGCAGCAAAAGCTCAGGAAGCAATATCATCTCTCTCACCACAGGATTTGGATAAAATGGTGTGA

Coding sequence (CDS)

ATGCTTGCTTATAGATCATTTCAGAGATTTGTTTCAAATGCTGATCCCAATACTCTAGCTGCAATGAGCTTTGGGAAACCTGGAGAGGTATCTCCAGACATGATTGCCACTGCCTCAAATATGATCAGCAAGATGTCTCCAGATGAACTTCAAGAGAATATGAGTCCAGAAATGATGGCAAACATGAGCGAACAATTTGGTGTGAAGCTTTCTCCAGAGGATGCAGCAAAAGCTCAGGAAGCAATATCATCTCTCTCACCACAGGATTTGGATAAAATGGTGTGA

Homology

[Close]

BLAST of CmoCh02G012280 vs. Swiss-Prot
Match: OEP61_ARATH (Outer envelope protein 61 OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-11
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQENM-------- 62
           A R+FQ F+S  DP+TLAA+S GK G++SPDM  TAS+MI KMSP+E+Q+ +        
Sbjct: 285 AIRTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKG 344

Query: 63  -SPEMMANMSEQFGVKLSPEDAAKAQEAISSLSPQDLDKM 94
            +P      S + G   +P+    A + +  +SP++ ++M
Sbjct: 345 DNPFAPTAPSTENGFTPTPDMLKLASDMMGKMSPEERERM 384

[Close]

BLAST of CmoCh02G012280 vs. TrEMBL
Match: I1LRN3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G096600 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQENMSPEMMANM 62
           A RSFQ F+SN DP TLA+++ G+  +VSPDMI T S+M+       + +NMSPEMMANM
Sbjct: 297 AVRSFQNFISNTDPATLASLNAGQFKDVSPDMIKTTSDMMFT----SMVKNMSPEMMANM 356

Query: 63  SEQFGVKLSPEDAAKAQEAISSLSPQDLDKMV 95
            EQFGVKLSPE+AAKAQ+A+SSLSP+ LDKM+
Sbjct: 357 GEQFGVKLSPEEAAKAQQAMSSLSPESLDKMM 384

[Close]

BLAST of CmoCh02G012280 vs. TrEMBL
Match: A0A0A0KX21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279860 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-15
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQENMSPEMMANM 62
           A RSFQRFVSNADP+TLAAM+FGK G +SPDM+ATASNMISKMSP ELQ+ +  ++ ++ 
Sbjct: 287 AIRSFQRFVSNADPDTLAAMNFGKSGGISPDMVATASNMISKMSPSELQDML--KLASSF 346

Query: 63  SEQFGVK------------LSPEDAAKAQEAISSLSPQDLDKM 94
            E   +K            ++PE  + A   +SS+ P+DL +M
Sbjct: 347 QEANPLKGDSLGPNLDSANMTPEMLSSASRIMSSMPPEDLQRM 387

[Close]

BLAST of CmoCh02G012280 vs. TrEMBL
Match: A0A061GVQ6_THECC (Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_041189 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-11
Identity = 50/110 (45.45%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQENMSPEMMANM 62
           A RSFQ FVSNADP+TLAAMS GK GEVSPDM  T SNMISKMSP+ LQ+      MA M
Sbjct: 251 ALRSFQNFVSNADPDTLAAMSGGKVGEVSPDMFKTVSNMISKMSPEGLQK------MAQM 310

Query: 63  SEQF-------------------GVKLSPEDAAKAQEAISSLSPQDLDKM 94
           +  F                      ++PE    A + ++ + P++L KM
Sbjct: 311 ASSFQGENPYTGPLKNGFGPGSVPPNVTPEMLKTATDMMTKMPPEELQKM 354

[Close]

BLAST of CmoCh02G012280 vs. TrEMBL
Match: A0A061GUU0_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_041189 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-11
Identity = 50/110 (45.45%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQENMSPEMMANM 62
           A RSFQ FVSNADP+TLAAMS GK GEVSPDM  T SNMISKMSP+ LQ+      MA M
Sbjct: 294 ALRSFQNFVSNADPDTLAAMSGGKVGEVSPDMFKTVSNMISKMSPEGLQK------MAQM 353

Query: 63  SEQF-------------------GVKLSPEDAAKAQEAISSLSPQDLDKM 94
           +  F                      ++PE    A + ++ + P++L KM
Sbjct: 354 ASSFQGENPYTGPLKNGFGPGSVPPNVTPEMLKTATDMMTKMPPEELQKM 397

[Close]

BLAST of CmoCh02G012280 vs. TrEMBL
Match: A0A059AC77_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00595 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.7e-11
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQENM-------- 62
           A RSFQ F+SNADP TLAAM  G  GEVSPD+I TAS+MI KMS +ELQ+ +        
Sbjct: 300 AIRSFQNFISNADPTTLAAMGAGNAGEVSPDLIKTASSMIGKMSAEELQKMIQLASSFPG 359

Query: 63  -SPEMMANM---SEQFG----VKLSPEDAAKAQEAISSLSPQDLDKM 94
            +P +  N    S  FG      +SP+    A + +S +SP DL +M
Sbjct: 360 ENPYVTRNSDSNSNSFGNGSIPNVSPDMLKTASDMMSKMSPDDLQRM 406

[Close]

BLAST of CmoCh02G012280 vs. TAIR10
Match: AT5G21990.1 (AT5G21990.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 4.1e-12
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQENM-------- 62
           A R+FQ F+S  DP+TLAA+S GK G++SPDM  TAS+MI KMSP+E+Q+ +        
Sbjct: 285 AIRTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKG 344

Query: 63  -SPEMMANMSEQFGVKLSPEDAAKAQEAISSLSPQDLDKM 94
            +P      S + G   +P+    A + +  +SP++ ++M
Sbjct: 345 DNPFAPTAPSTENGFTPTPDMLKLASDMMGKMSPEERERM 384

[Close]

BLAST of CmoCh02G012280 vs. NCBI nr
Match: gi|947076506|gb|KRH25346.1| (hypothetical protein GLYMA_12G096600 [Glycine max])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQENMSPEMMANM 62
           A RSFQ F+SN DP TLA+++ G+  +VSPDMI T S+M+       + +NMSPEMMANM
Sbjct: 297 AVRSFQNFISNTDPATLASLNAGQFKDVSPDMIKTTSDMMFT----SMVKNMSPEMMANM 356

Query: 63  SEQFGVKLSPEDAAKAQEAISSLSPQDLDKMV 95
            EQFGVKLSPE+AAKAQ+A+SSLSP+ LDKM+
Sbjct: 357 GEQFGVKLSPEEAAKAQQAMSSLSPESLDKMM 384

[Close]

BLAST of CmoCh02G012280 vs. NCBI nr
Match: gi|659097837|ref|XP_008449840.1| (PREDICTED: outer envelope protein 61, chloroplastic [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-15
Identity = 55/101 (54.46%), Postives = 68/101 (67.33%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQENM---SPEMM 62
           A RSFQRFVSNADP+TLAAM+FGK G +SPDM+ATASNMISKMSP ELQE +   S    
Sbjct: 287 AIRSFQRFVSNADPDTLAAMNFGKSGGISPDMVATASNMISKMSPSELQEMLKLASSFQE 346

Query: 63  ANMSEQFGV-------KLSPEDAAKAQEAISSLSPQDLDKM 94
           AN     G+        ++PE  + A   +SS+ P+DL +M
Sbjct: 347 ANPLNADGLGPNLDSANMTPEMLSSASRIMSSMPPEDLQRM 387

[Close]

BLAST of CmoCh02G012280 vs. NCBI nr
Match: gi|449448844|ref|XP_004142175.1| (PREDICTED: outer envelope protein 61 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQENMSPEMMANM 62
           A RSFQRFVSNADP+TLAAM+FGK G +SPDM+ATASNMISKMSP ELQ+ +  ++ ++ 
Sbjct: 287 AIRSFQRFVSNADPDTLAAMNFGKSGGISPDMVATASNMISKMSPSELQDML--KLASSF 346

Query: 63  SEQFGVK------------LSPEDAAKAQEAISSLSPQDLDKM 94
            E   +K            ++PE  + A   +SS+ P+DL +M
Sbjct: 347 QEANPLKGDSLGPNLDSANMTPEMLSSASRIMSSMPPEDLQRM 387

[Close]

BLAST of CmoCh02G012280 vs. NCBI nr
Match: gi|823218286|ref|XP_012441793.1| (PREDICTED: LOW QUALITY PROTEIN: outer envelope protein 61 [Gossypium raimondii])

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-12
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQE---------- 62
           A RSFQ+F+SNADP TL+A+S GK GEVSPD+  TA+NMI KMSP++LQ+          
Sbjct: 267 ALRSFQKFISNADPYTLSALSSGKVGEVSPDLFKTATNMIGKMSPEQLQKMVQLDLDLSV 326

Query: 63  --NMSPEMMANMSEQFGVKLSPEDAAKAQEAISSLSPQD 90
             N++P+M+ + ++    K+ PE+  K  EA +SL   D
Sbjct: 327 HPNVTPDMLKSATDMM-TKMPPEELQKMFEAAASLEGND 364

[Close]

BLAST of CmoCh02G012280 vs. NCBI nr
Match: gi|590586123|ref|XP_007015617.1| (Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 50/110 (45.45%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 3   AYRSFQRFVSNADPNTLAAMSFGKPGEVSPDMIATASNMISKMSPDELQENMSPEMMANM 62
           A RSFQ FVSNADP+TLAAMS GK GEVSPDM  T SNMISKMSP+ LQ+      MA M
Sbjct: 294 ALRSFQNFVSNADPDTLAAMSGGKVGEVSPDMFKTVSNMISKMSPEGLQK------MAQM 353

Query: 63  SEQF-------------------GVKLSPEDAAKAQEAISSLSPQDLDKM 94
           +  F                      ++PE    A + ++ + P++L KM
Sbjct: 354 ASSFQGENPYTGPLKNGFGPGSVPPNVTPEMLKTATDMMTKMPPEELQKM 397

The following BLAST results are available for this feature:

BLAST of CmoCh02G012280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
OEP61_ARATH	7.3e-11	39.00	Outer envelope protein 61 OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1	[more]

BLAST of CmoCh02G012280 vs. TrEMBL


Match Name	E-value	Identity	Description
I1LRN3_SOYBN	1.2e-20	63.04	Uncharacterized protein OS=Glycine max GN=GLYMA_12G096600 PE=4 SV=1	[more]
A0A0A0KX21_CUCSA	2.6e-15	50.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279860 PE=4 SV=1	[more]
A0A061GVQ6_THECC	2.3e-11	45.45	Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao G...	[more]
A0A061GUU0_THECC	2.3e-11	45.45	Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 OS=Theobroma c...	[more]
A0A059AC77_EUCGR	8.7e-11	45.79	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00595 PE=4 SV=1	[more]

BLAST of CmoCh02G012280 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21990.1	4.1e-12	39.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CmoCh02G012280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|947076506\|gb\|KRH25346.1\|	1.7e-20	63.04	hypothetical protein GLYMA_12G096600 [Glycine max]	[more]
gi\|659097837\|ref\|XP_008449840.1\|	1.3e-15	54.46	PREDICTED: outer envelope protein 61, chloroplastic [Cucumis melo]	[more]
gi\|449448844\|ref\|XP_004142175.1\|	3.7e-15	50.49	PREDICTED: outer envelope protein 61 [Cucumis sativus]	[more]
gi\|823218286\|ref\|XP_012441793.1\|	3.0e-12	46.46	PREDICTED: LOW QUALITY PROTEIN: outer envelope protein 61 [Gossypium raimondii]	[more]
gi\|590586123\|ref\|XP_007015617.1\|	3.3e-11	45.45	Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cac...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046967	cytosol to ER transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0098588	bounding membrane of organelle
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0044446	intracellular organelle part
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G012280.1	CmoCh02G012280.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G012280	Cucsa.153080	Cucumber (Gy14) v1	cgycmoB0424
CmoCh02G012280	CmaCh02G011960	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G012280	Cla003157	Watermelon (97103) v1	cmowmB585
CmoCh02G012280	Csa4G279860	Cucumber (Chinese Long) v2	cmocuB596
CmoCh02G012280	MELO3C014691	Melon (DHL92) v3.5.1	cmomeB561
CmoCh02G012280	ClCG02G024090	Watermelon (Charleston Gray)	cmowcgB538
CmoCh02G012280	CSPI04G12880	Wild cucumber (PI 183967)	cmocpiB603
CmoCh02G012280	Lsi10G009570	Bottle gourd (USVL1VR-Ls)	cmolsiB525
CmoCh02G012280	Cp4.1LG16g09290	Cucurbita pepo (Zucchini)	cmocpeB576
CmoCh02G012280	Cp4.1LG05g05300	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G012280	MELO3C014691.2	Melon (DHL92) v3.6.1	cmomedB642
CmoCh02G012280	CsaV3_4G023240	Cucumber (Chinese Long) v3	cmocucB0713
CmoCh02G012280	Cla97C02G050300	Watermelon (97103) v2	cmowmbB602
CmoCh02G012280	Bhi10G000357	Wax gourd	cmowgoB0747
CmoCh02G012280	CsGy4G012440	Cucumber (Gy14) v2	cgybcmoB496
CmoCh02G012280	Carg02762	Silver-seed gourd	carcmoB1237
CmoCh02G012280	Carg06954	Silver-seed gourd	carcmoB0710

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G012280	CmoCh20G000230	Cucurbita moschata (Rifu)	cmocmoB405

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G012280	Cucumber (Gy14) v2	cgybcmoB110
CmoCh02G012280	Cucumber (Chinese Long) v3	cmocucB0676
CmoCh02G012280	Cucurbita moschata (Rifu)	cmocmoB072
CmoCh02G012280	Cucumber (Gy14) v1	cgycmoB0399
CmoCh02G012280	Cucurbita maxima (Rimu)	cmacmoB094
CmoCh02G012280	Cucurbita maxima (Rimu)	cmacmoB555
CmoCh02G012280	Wild cucumber (PI 183967)	cmocpiB571
CmoCh02G012280	Cucumber (Chinese Long) v2	cmocuB566