CmoCh02G011630 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G011630
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDof zinc finger protein
LocationCmo_Chr02 : 7022547 .. 7023336 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCATGGACATGCCTTATTCGCCACAGGTAATGGAATCATTTTTCATCCTTTCCTATCCAAAGTCGTTACTGTCATTTTAATAAGCTCGTATGCAAAATTTAACTCTTAAAACATCATCGGATACCAACTCTAACCGTTCAAACCTACAACTAATAGATATTGTCTTTTTTGGGTTCTAGTTAAAGGTTTTTATAAAGAATGTTTCATTCTCCTTTTCAACCGATGAACGACTATTTAAGGAACGACTATTTAAGGAGGATAAAAAAAATCATTTTTTGTTTCTTTTCCTCTCACTTTCAAATGGGTCTGAAAGTATTGAAATTTGGATGAATTTGGTTTTCAGAATTCAGCTGGAGGAGGAGGAGGAGGAGGATCTTCATCAAGTTCTTCAAAGGGTAATCATGCATTAGAGAGAAAAGTAAGGCCAGAAAAGGAACGAGCTTTGAGGTGTCCGAGGTGCAATTCAGCCAACACCAAGTTCTGTTATTACAACAATTACAGTTTGTCTCAGCCCAGGTATTTTTGCAAAGCTTGTCGGAAGTATTGGACTGACGGCAGCTCTTTAAGGAATGTTCCTGTCGGCGGTGGCTCAAGGAAGAACAGAAGGTCTTCATTTTCATCATCATCAGCTGATGATGATAGAAAGATTGACACCCACCACCCTATTCCGGCTTCTTCAACTACTTCTCCTCATCTTTTTGGTTCTTTCATGGCGGCCAACGGCGGCGGCGGCGATGACCAGACGGCTGTTATGTTTCCAGCTGAAAAAGTTGAGTTAAATCGATGA

mRNA sequence

TTTCCATGGACATGCCTTATTCGCCACAGAATTCAGCTGGAGGAGGAGGAGGAGGAGGATCTTCATCAAGTTCTTCAAAGGGTAATCATGCATTAGAGAGAAAAGTAAGGCCAGAAAAGGAACGAGCTTTGAGGTGTCCGAGGTGCAATTCAGCCAACACCAAGTTCTGTTATTACAACAATTACAGTTTGTCTCAGCCCAGGTATTTTTGCAAAGCTTGTCGGAAGTATTGGACTGACGGCAGCTCTTTAAGGAATGTTCCTGTCGGCGGTGGCTCAAGGAAGAACAGAAGGTCTTCATTTTCATCATCATCAGCTGATGATGATAGAAAGATTGACACCCACCACCCTATTCCGGCTTCTTCAACTACTTCTCCTCATCTTTTTGGTTCTTTCATGGCGGCCAACGGCGGCGGCGGCGATGACCAGACGGCTGTTATGTTTCCAGCTGAAAAAGTTGAGTTAAATCGATGA

Coding sequence (CDS)

ATGGACATGCCTTATTCGCCACAGAATTCAGCTGGAGGAGGAGGAGGAGGAGGATCTTCATCAAGTTCTTCAAAGGGTAATCATGCATTAGAGAGAAAAGTAAGGCCAGAAAAGGAACGAGCTTTGAGGTGTCCGAGGTGCAATTCAGCCAACACCAAGTTCTGTTATTACAACAATTACAGTTTGTCTCAGCCCAGGTATTTTTGCAAAGCTTGTCGGAAGTATTGGACTGACGGCAGCTCTTTAAGGAATGTTCCTGTCGGCGGTGGCTCAAGGAAGAACAGAAGGTCTTCATTTTCATCATCATCAGCTGATGATGATAGAAAGATTGACACCCACCACCCTATTCCGGCTTCTTCAACTACTTCTCCTCATCTTTTTGGTTCTTTCATGGCGGCCAACGGCGGCGGCGGCGATGACCAGACGGCTGTTATGTTTCCAGCTGAAAAAGTTGAGTTAAATCGATGA
Homology
[Close]
BLAST of CmoCh02G011630 vs. Swiss-Prot
Match: DOF18_ARATH (Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.0e-31
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 1 

Query: 30  LERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFCKACRKYWTDGSSLRNVPVGG 89
           +ERK RPEK++AL CPRCNS NTKFCYYNNYSL+QPRYFCK CR+YWT G SLRN+PVGG
Sbjct: 37  VERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGG 96

Query: 90  GSRKNRRSSFSSSSADDDRKIDTHHPIPASSTTS----PHL 127
           G RKN+RSS +SSS+       +  P+ A++ T     PHL
Sbjct: 97  GVRKNKRSSSNSSSSSPSSSSSSKKPLFANNNTPTPPLPHL 137

[Close]
BLAST of CmoCh02G011630 vs. Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-30
Identity = 62/96 (64.58%), Postives = 71/96 (73.96%), Query Frame = 1 

Query: 31  ERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFCKACRKYWTDGSSLRNVPVGGG 90
           ERK RPEK++A+ CPRCNS NTKFCYYNNYSL+QPRYFCK CR+YWT+G SLRN+PVGGG
Sbjct: 42  ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query: 91  SRKNRRSSFSSSSADDDRKIDTHHPIPASSTTSPHL 127
           SRKN+RS  SSS       I  +H       T  HL
Sbjct: 102 SRKNKRSHSSSSD------ISNNHSDSTQPATKKHL 131

[Close]
BLAST of CmoCh02G011630 vs. Swiss-Prot
Match: DOF25_ARATH (Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-26
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 1 

Query: 10  SAGGGGGGGSSSSSSKGNHALERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFC 69
           S  G    G S++++      ERK RP+++  L CPRCNS NTKFCYYNNYSL+QPRYFC
Sbjct: 50  STAGATVSGVSNNNNNTAVVAERKARPQEK--LNCPRCNSTNTKFCYYNNYSLTQPRYFC 109

Query: 70  KACRKYWTDGSSLRNVPVGGGSRKNRRSSFSSSS 104
           K CR+YWT+G SLRNVPVGG SRKN+RSS SSSS
Sbjct: 110 KGCRRYWTEGGSLRNVPVGGSSRKNKRSSSSSSS 141

[Close]
BLAST of CmoCh02G011630 vs. Swiss-Prot
Match: DOF37_ARATH (Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 2.7e-26
Identity = 63/114 (55.26%), Postives = 82/114 (71.93%), Query Frame = 1 

Query: 7   PQNSAGGGGGGGSSSSSSKGNHALERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPR 66
           P  +A  GG GG++++++       RK RP+++  + CPRCNS NTKFCYYNNYSL+QPR
Sbjct: 44  PNATASNGGSGGNTNNTATME---TRKARPQEK--VNCPRCNSTNTKFCYYNNYSLTQPR 103

Query: 67  YFCKACRKYWTDGSSLRNVPVGGGSRKNRRSSFSSSSADDDRKIDTHHPIPASS 121
           YFCK CR+YWT+G SLRNVPVGG SRKN+RSS   +S  + +  D + PI  SS
Sbjct: 104 YFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSTPLASPSNPKLPDLNPPILFSS 152

[Close]
BLAST of CmoCh02G011630 vs. Swiss-Prot
Match: PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-25
Identity = 68/140 (48.57%), Postives = 82/140 (58.57%), Query Frame = 1 

Query: 31  ERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFCKACRKYWTDGSSLRNVPVGGG 90
           ERK RP+   AL+CPRC+S NTKFCYYNNYS+SQPRYFCKACR+YWT G +LRNVP+GGG
Sbjct: 49  ERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGG 108

Query: 91  SRKNRRSS--------FSSSSA------------DDDRKIDTH-HPIPASSTTSPHLFGS 143
            RKN+ +S         SSSSA              +  I+ H   +P  +  +P   G 
Sbjct: 109 CRKNKHASRFVLGSHTSSSSSATYAPLSPSTNASSSNMSINKHMMMVPNMTMPTPTTMGL 168

[Close]
BLAST of CmoCh02G011630 vs. TrEMBL
Match: A0A0A0KJS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139210 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.5e-39
Identity = 106/214 (49.53%), Postives = 122/214 (57.01%), Query Frame = 1 

Query: 12  GGGGGGGSSSSSSK--------GNHALERKVRPEKERALRCPRCNSANTKFCYYNNYSLS 71
           GGGGGGGSSSS SK        GN+ LE+KVR EKE+AL+CPRCNS+NTKFCYYNNYSLS
Sbjct: 8   GGGGGGGSSSSCSKPNSGNNGNGNNLLEKKVRGEKEQALKCPRCNSSNTKFCYYNNYSLS 67

Query: 72  QPRYFCKACRKYWTDGSSLRNVPVGGGSRKNRRSSF--SSSSADDDRKIDTHH------- 131
           QPRYFCKACR+YWT+G SLRNVPVGGGSRKN+RSS   SSSS+D ++KI+  H       
Sbjct: 68  QPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSSLSSSSSSSDHNKKINASHQIINHQD 127

Query: 132 ---------------PIPASSTTSPHLFGSFMAA------NGGGG--------------- 153
                           I  SS++S HL  SFM A      NG GG               
Sbjct: 128 LNLAIFPPNNNNNNTSISTSSSSSSHLLASFMTAPATGMFNGSGGFGLNELKPPASLSFS 187

[Close]
BLAST of CmoCh02G011630 vs. TrEMBL
Match: A0A068UV02_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035620001 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 74/111 (66.67%), Postives = 86/111 (77.48%), Query Frame = 1 

Query: 18  GSSSSSSKGNHALERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFCKACRKYWT 77
           GS++S SK   +LERKVRP+KE+AL CPRCNS NTKFCYYNNYSLSQPRYFCK CR+YWT
Sbjct: 23  GSTTSCSKPGSSLERKVRPQKEQALNCPRCNSINTKFCYYNNYSLSQPRYFCKTCRRYWT 82

Query: 78  DGSSLRNVPVGGGSRKNRRSSFSSSSADDDRKIDTHHP--IPASSTTSPHL 127
           +G SLRN+PVGGGSRKN+RSS SSSS+          P  IP SS  +P +
Sbjct: 83  EGGSLRNIPVGGGSRKNKRSSSSSSSSSSSVSSSKKLPDLIPPSSHQNPKI 133

[Close]
BLAST of CmoCh02G011630 vs. TrEMBL
Match: A0A067GDE5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023047mg PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-31
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 1 

Query: 29  ALERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFCKACRKYWTDGSSLRNVPVG 88
           ALERK RP+KE+AL CPRCNS NTKFCYYNNYSL+QPRYFCK CR+YWT+G SLRN+PVG
Sbjct: 31  ALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVG 90

Query: 89  GGSRKNRRSSFSSSSADDDRKIDTHHP 116
           GGSRKN+RSS SS    D     +HHP
Sbjct: 91  GGSRKNKRSSSSSKKLPDPATPPSHHP 117

[Close]
BLAST of CmoCh02G011630 vs. TrEMBL
Match: V4VIN3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021521mg PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-31
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 1 

Query: 29  ALERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFCKACRKYWTDGSSLRNVPVG 88
           ALERK RP+KE+AL CPRCNS NTKFCYYNNYSL+QPRYFCK CR+YWT+G SLRN+PVG
Sbjct: 31  ALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVG 90

Query: 89  GGSRKNRRSSFSSSSADDDRKIDTHHP 116
           GGSRKN+RSS SS    D     +HHP
Sbjct: 91  GGSRKNKRSSSSSKKLPDPATPPSHHP 117

[Close]
BLAST of CmoCh02G011630 vs. TrEMBL
Match: A0A067GMW9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023047mg PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-31
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 1 

Query: 29  ALERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFCKACRKYWTDGSSLRNVPVG 88
           ALERK RP+KE+AL CPRCNS NTKFCYYNNYSL+QPRYFCK CR+YWT+G SLRN+PVG
Sbjct: 31  ALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVG 90

Query: 89  GGSRKNRRSSFSSSSADDDRKIDTHHP 116
           GGSRKN+RSS SS    D     +HHP
Sbjct: 91  GGSRKNKRSSSSSKKLPDPATPPSHHP 117

[Close]
BLAST of CmoCh02G011630 vs. TAIR10
Match: AT1G64620.1 (AT1G64620.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 134.8 bits (338), Expect = 4.5e-32
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 1 

Query: 30  LERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFCKACRKYWTDGSSLRNVPVGG 89
           +ERK RPEK++AL CPRCNS NTKFCYYNNYSL+QPRYFCK CR+YWT G SLRN+PVGG
Sbjct: 37  VERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGG 96

Query: 90  GSRKNRRSSFSSSSADDDRKIDTHHPIPASSTTS----PHL 127
           G RKN+RSS +SSS+       +  P+ A++ T     PHL
Sbjct: 97  GVRKNKRSSSNSSSSSPSSSSSSKKPLFANNNTPTPPLPHL 137

[Close]
BLAST of CmoCh02G011630 vs. TAIR10
Match: AT4G24060.1 (AT4G24060.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-31
Identity = 62/96 (64.58%), Postives = 71/96 (73.96%), Query Frame = 1 

Query: 31  ERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFCKACRKYWTDGSSLRNVPVGGG 90
           ERK RPEK++A+ CPRCNS NTKFCYYNNYSL+QPRYFCK CR+YWT+G SLRN+PVGGG
Sbjct: 42  ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query: 91  SRKNRRSSFSSSSADDDRKIDTHHPIPASSTTSPHL 127
           SRKN+RS  SSS       I  +H       T  HL
Sbjct: 102 SRKNKRSHSSSSD------ISNNHSDSTQPATKKHL 131

[Close]
BLAST of CmoCh02G011630 vs. TAIR10
Match: AT2G46590.2 (AT2G46590.2 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-28
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 1 

Query: 10  SAGGGGGGGSSSSSSKGNHALERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFC 69
           S  G    G S++++      ERK RP+++  L CPRCNS NTKFCYYNNYSL+QPRYFC
Sbjct: 50  STAGATVSGVSNNNNNTAVVAERKARPQEK--LNCPRCNSTNTKFCYYNNYSLTQPRYFC 109

Query: 70  KACRKYWTDGSSLRNVPVGGGSRKNRRSSFSSSS 104
           K CR+YWT+G SLRNVPVGG SRKN+RSS SSSS
Sbjct: 110 KGCRRYWTEGGSLRNVPVGGSSRKNKRSSSSSSS 141

[Close]
BLAST of CmoCh02G011630 vs. TAIR10
Match: AT3G61850.4 (AT3G61850.4 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-27
Identity = 63/114 (55.26%), Postives = 82/114 (71.93%), Query Frame = 1 

Query: 7   PQNSAGGGGGGGSSSSSSKGNHALERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPR 66
           P  +A  GG GG++++++       RK RP+++  + CPRCNS NTKFCYYNNYSL+QPR
Sbjct: 44  PNATASNGGSGGNTNNTATME---TRKARPQEK--VNCPRCNSTNTKFCYYNNYSLTQPR 103

Query: 67  YFCKACRKYWTDGSSLRNVPVGGGSRKNRRSSFSSSSADDDRKIDTHHPIPASS 121
           YFCK CR+YWT+G SLRNVPVGG SRKN+RSS   +S  + +  D + PI  SS
Sbjct: 104 YFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSTPLASPSNPKLPDLNPPILFSS 152

[Close]
BLAST of CmoCh02G011630 vs. TAIR10
Match: AT2G28510.1 (AT2G28510.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 114.4 bits (285), Expect = 6.3e-26
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 1 

Query: 19  SSSSSSKGNHALERKVRPEKER------ALRCPRCNSANTKFCYYNNYSLSQPRYFCKAC 78
           S+  S+  N  +E +++ +  R      A  CPRC S NTKFCYYNNYSLSQPRYFCK+C
Sbjct: 19  STKGSNNNNKKMEEEMKKKVSRGELGGEAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSC 78

Query: 79  RKYWTDGSSLRNVPVGGGSRKNRRSSFSSSSADDDRKIDTHHPIP 118
           R+YWT G +LRNVPVGGG R+N+RSS S+ S +++ K    H  P
Sbjct: 79  RRYWTKGGTLRNVPVGGGCRRNKRSSSSAFSKNNNNKSINFHTDP 123

[Close]
BLAST of CmoCh02G011630 vs. NCBI nr
Match: gi|778698789|ref|XP_004145942.2| (PREDICTED: dof zinc finger protein DOF2.5-like [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-38
Identity = 106/214 (49.53%), Postives = 122/214 (57.01%), Query Frame = 1 

Query: 12  GGGGGGGSSSSSSK--------GNHALERKVRPEKERALRCPRCNSANTKFCYYNNYSLS 71
           GGGGGGGSSSS SK        GN+ LE+KVR EKE+AL+CPRCNS+NTKFCYYNNYSLS
Sbjct: 22  GGGGGGGSSSSCSKPNSGNNGNGNNLLEKKVRGEKEQALKCPRCNSSNTKFCYYNNYSLS 81

Query: 72  QPRYFCKACRKYWTDGSSLRNVPVGGGSRKNRRSSF--SSSSADDDRKIDTHH------- 131
           QPRYFCKACR+YWT+G SLRNVPVGGGSRKN+RSS   SSSS+D ++KI+  H       
Sbjct: 82  QPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSSLSSSSSSSDHNKKINASHQIINHQD 141

Query: 132 ---------------PIPASSTTSPHLFGSFMAA------NGGGG--------------- 153
                           I  SS++S HL  SFM A      NG GG               
Sbjct: 142 LNLAIFPPNNNNNNTSISTSSSSSSHLLASFMTAPATGMFNGSGGFGLNELKPPASLSFS 201

[Close]
BLAST of CmoCh02G011630 vs. NCBI nr
Match: gi|700194666|gb|KGN49843.1| (hypothetical protein Csa_5G139210 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-38
Identity = 106/214 (49.53%), Postives = 122/214 (57.01%), Query Frame = 1 

Query: 12  GGGGGGGSSSSSSK--------GNHALERKVRPEKERALRCPRCNSANTKFCYYNNYSLS 71
           GGGGGGGSSSS SK        GN+ LE+KVR EKE+AL+CPRCNS+NTKFCYYNNYSLS
Sbjct: 8   GGGGGGGSSSSCSKPNSGNNGNGNNLLEKKVRGEKEQALKCPRCNSSNTKFCYYNNYSLS 67

Query: 72  QPRYFCKACRKYWTDGSSLRNVPVGGGSRKNRRSSF--SSSSADDDRKIDTHH------- 131
           QPRYFCKACR+YWT+G SLRNVPVGGGSRKN+RSS   SSSS+D ++KI+  H       
Sbjct: 68  QPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSSLSSSSSSSDHNKKINASHQIINHQD 127

Query: 132 ---------------PIPASSTTSPHLFGSFMAA------NGGGG--------------- 153
                           I  SS++S HL  SFM A      NG GG               
Sbjct: 128 LNLAIFPPNNNNNNTSISTSSSSSSHLLASFMTAPATGMFNGSGGFGLNELKPPASLSFS 187

[Close]
BLAST of CmoCh02G011630 vs. NCBI nr
Match: gi|659074484|ref|XP_008437630.1| (PREDICTED: dof zinc finger protein DOF4.6-like [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 2.0e-37
Identity = 98/176 (55.68%), Postives = 115/176 (65.34%), Query Frame = 1 

Query: 1   MDMPYSPQNSAGGG-------GGGGSSSSSSK-------GNHALERKVRPEKERALRCPR 60
           MD  + PQ + GGG       GGGGSSSS SK       GN+ LERKVR EKE+AL+CPR
Sbjct: 1   MDTAHWPQFAGGGGVVVKQMEGGGGSSSSCSKPNSGNGNGNNLLERKVRGEKEQALKCPR 60

Query: 61  CNSANTKFCYYNNYSLSQPRYFCKACRKYWTDGSSLRNVPVGGGSRKNRRSSFSSS--SA 120
           CNS+NTKFCYYNNYSLSQPRYFCKACR+YWT+G SLRNVPVGGGSRKN+RSS SSS  S+
Sbjct: 61  CNSSNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSSLSSSSTSS 120

Query: 121 DDDRKIDTHHPI-----------------------PASSTTSPHLFGSFMAANGGG 138
           D ++KI+  H I                        ++S++S HL  SFM A   G
Sbjct: 121 DHNKKINASHQIINHQDLNLAIFPPNNNNNNNNTSISTSSSSSHLLASFMTAPATG 176

[Close]
BLAST of CmoCh02G011630 vs. NCBI nr
Match: gi|661884289|emb|CDP12206.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 147.5 bits (371), Expect = 1.9e-32
Identity = 74/111 (66.67%), Postives = 86/111 (77.48%), Query Frame = 1 

Query: 18  GSSSSSSKGNHALERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFCKACRKYWT 77
           GS++S SK   +LERKVRP+KE+AL CPRCNS NTKFCYYNNYSLSQPRYFCK CR+YWT
Sbjct: 23  GSTTSCSKPGSSLERKVRPQKEQALNCPRCNSINTKFCYYNNYSLSQPRYFCKTCRRYWT 82

Query: 78  DGSSLRNVPVGGGSRKNRRSSFSSSSADDDRKIDTHHP--IPASSTTSPHL 127
           +G SLRN+PVGGGSRKN+RSS SSSS+          P  IP SS  +P +
Sbjct: 83  EGGSLRNIPVGGGSRKNKRSSSSSSSSSSSVSSSKKLPDLIPPSSHQNPKI 133

[Close]
BLAST of CmoCh02G011630 vs. NCBI nr
Match: gi|641857915|gb|KDO76660.1| (hypothetical protein CISIN_1g023047mg [Citrus sinensis])

HSP 1 Score: 143.3 bits (360), Expect = 3.6e-31
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 1 

Query: 29  ALERKVRPEKERALRCPRCNSANTKFCYYNNYSLSQPRYFCKACRKYWTDGSSLRNVPVG 88
           ALERK RP+KE+AL CPRCNS NTKFCYYNNYSL+QPRYFCK CR+YWT+G SLRN+PVG
Sbjct: 31  ALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVG 90

Query: 89  GGSRKNRRSSFSSSSADDDRKIDTHHP 116
           GGSRKN+RSS SS    D     +HHP
Sbjct: 91  GGSRKNKRSSSSSKKLPDPATPPSHHP 117

The following BLAST results are available for this feature:
BLAST of CmoCh02G011630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DOF18_ARATH8.0e-3163.37Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1[more]
DOF46_ARATH3.0e-3064.58Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2[more]
DOF25_ARATH1.6e-2664.89Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3[more]
DOF37_ARATH2.7e-2655.26Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2[more]
PBF_MAIZE1.0e-2548.57Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1[more]
BLAST of CmoCh02G011630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJS3_CUCSA9.5e-3949.53Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139210 PE=4 SV=1[more]
A0A068UV02_COFCA1.3e-3266.67Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035620001 PE=4 SV=1[more]
A0A067GDE5_CITSI2.5e-3173.56Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023047mg PE=4 SV=1[more]
V4VIN3_9ROSI2.5e-3173.56Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021521mg PE=4 SV=1[more]
A0A067GMW9_CITSI2.5e-3173.56Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023047mg PE=4 SV=1[more]
BLAST of CmoCh02G011630 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G64620.14.5e-3263.37 Dof-type zinc finger DNA-binding family protein[more]
AT4G24060.11.7e-3164.58 Dof-type zinc finger DNA-binding family protein[more]
AT2G46590.28.8e-2864.89 Dof-type zinc finger DNA-binding family protein[more]
AT3G61850.41.5e-2755.26 Dof-type zinc finger DNA-binding family protein[more]
AT2G28510.16.3e-2653.33 Dof-type zinc finger DNA-binding family protein[more]
BLAST of CmoCh02G011630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778698789|ref|XP_004145942.2|1.4e-3849.53PREDICTED: dof zinc finger protein DOF2.5-like [Cucumis sativus][more]
gi|700194666|gb|KGN49843.1|1.4e-3849.53hypothetical protein Csa_5G139210 [Cucumis sativus][more]
gi|659074484|ref|XP_008437630.1|2.0e-3755.68PREDICTED: dof zinc finger protein DOF4.6-like [Cucumis melo][more]
gi|661884289|emb|CDP12206.1|1.9e-3266.67unnamed protein product [Coffea canephora][more]
gi|641857915|gb|KDO76660.1|3.6e-3173.56hypothetical protein CISIN_1g023047mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003851Znf_Dof
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0044212 transcription regulatory region DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G011630.1CmoCh02G011630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003851Zinc finger, Dof-typePRODOMPD007478coord: 30..87
score: 6.0
IPR003851Zinc finger, Dof-typePFAMPF02701zf-Dofcoord: 41..96
score: 1.0
IPR003851Zinc finger, Dof-typePROFILEPS50884ZF_DOF_2coord: 42..96
score: 28
NoneNo IPR availablePANTHERPTHR31992FAMILY NOT NAMEDcoord: 29..103
score: 1.3
NoneNo IPR availablePANTHERPTHR31992:SF15SUBFAMILY NOT NAMEDcoord: 29..103
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G011630Cucsa.202290Cucumber (Gy14) v1cgycmoB0603
CmoCh02G011630Cla004880Watermelon (97103) v1cmowmB567
CmoCh02G011630MELO3C005902Melon (DHL92) v3.5.1cmomeB521
CmoCh02G011630ClCG01G000270Watermelon (Charleston Gray)cmowcgB520
CmoCh02G011630CSPI05G02980Wild cucumber (PI 183967)cmocpiB608
CmoCh02G011630Lsi05G001190Bottle gourd (USVL1VR-Ls)cmolsiB559
CmoCh02G011630Lsi09G000090Bottle gourd (USVL1VR-Ls)cmolsiB520
CmoCh02G011630Cp4.1LG14g06900Cucurbita pepo (Zucchini)cmocpeB557
CmoCh02G011630Cp4.1LG13g03150Cucurbita pepo (Zucchini)cmocpeB551
CmoCh02G011630MELO3C005902.2Melon (DHL92) v3.6.1cmomedB599
CmoCh02G011630MELO3C019379.2Melon (DHL92) v3.6.1cmomedB650
CmoCh02G011630CsaV3_5G000300Cucumber (Chinese Long) v3cmocucB0721
CmoCh02G011630Cla97C05G091430Watermelon (97103) v2cmowmbB621
CmoCh02G011630Cla97C01G000310Watermelon (97103) v2cmowmbB580
CmoCh02G011630Bhi12G000577Wax gourdcmowgoB0703
CmoCh02G011630CsGy5G000240Cucumber (Gy14) v2cgybcmoB616
CmoCh02G011630Carg15052Silver-seed gourdcarcmoB1329
CmoCh02G011630Carg14003Silver-seed gourdcarcmoB0694
CmoCh02G011630Carg26604Silver-seed gourdcarcmoB0377
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh02G011630CmoCh15G010790Cucurbita moschata (Rifu)cmocmoB251
CmoCh02G011630CmoCh16G000400Cucurbita moschata (Rifu)cmocmoB281
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G011630Wild cucumber (PI 183967)cmocpiB599
CmoCh02G011630Wild cucumber (PI 183967)cmocpiB601
CmoCh02G011630Wild cucumber (PI 183967)cmocpiB611
CmoCh02G011630Cucumber (Chinese Long) v2cmocuB593
CmoCh02G011630Cucumber (Chinese Long) v2cmocuB595
CmoCh02G011630Cucumber (Chinese Long) v2cmocuB601
CmoCh02G011630Cucumber (Chinese Long) v2cmocuB603
CmoCh02G011630Melon (DHL92) v3.5.1cmomeB515
CmoCh02G011630Melon (DHL92) v3.5.1cmomeB567
CmoCh02G011630Melon (DHL92) v3.5.1cmomeB572
CmoCh02G011630Watermelon (Charleston Gray)cmowcgB557
CmoCh02G011630Watermelon (Charleston Gray)cmowcgB560
CmoCh02G011630Watermelon (97103) v1cmowmB558
CmoCh02G011630Cucurbita pepo (Zucchini)cmocpeB546
CmoCh02G011630Cucurbita pepo (Zucchini)cmocpeB589
CmoCh02G011630Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G011630Bottle gourd (USVL1VR-Ls)cmolsiB557
CmoCh02G011630Cucumber (Gy14) v2cgybcmoB372
CmoCh02G011630Cucumber (Gy14) v2cgybcmoB618
CmoCh02G011630Melon (DHL92) v3.6.1cmomedB591
CmoCh02G011630Melon (DHL92) v3.6.1cmomedB653
CmoCh02G011630Silver-seed gourdcarcmoB0734
CmoCh02G011630Cucumber (Chinese Long) v3cmocucB0707
CmoCh02G011630Cucumber (Chinese Long) v3cmocucB0710
CmoCh02G011630Cucumber (Chinese Long) v3cmocucB0723
CmoCh02G011630Watermelon (97103) v2cmowmbB625
CmoCh02G011630Wax gourdcmowgoB0719
CmoCh02G011630Cucurbita moschata (Rifu)cmocmoB212
CmoCh02G011630Cucurbita moschata (Rifu)cmocmoB333
CmoCh02G011630Cucumber (Gy14) v1cgycmoB0011
CmoCh02G011630Cucumber (Gy14) v1cgycmoB0604
CmoCh02G011630Cucumber (Gy14) v1cgycmoB0712
CmoCh02G011630Cucurbita maxima (Rimu)cmacmoB260
CmoCh02G011630Cucurbita maxima (Rimu)cmacmoB299
CmoCh02G011630Cucurbita maxima (Rimu)cmacmoB333
CmoCh02G011630Cucurbita maxima (Rimu)cmacmoB416
CmoCh02G011630Cucurbita maxima (Rimu)cmacmoB619