CmoCh02G011290 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G011290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium-binding tetratricopeptide family protein
LocationCmo_Chr02 : 6846026 .. 6848432 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTGTCATTAGAATTGGAGCAACCAAAAGCTCAAATTCAATCATTGGAGGGTCATATCGACTTGAAGCCTAGCCATGTAGATGCTTTGTATATTTTGGGTGGACTTTACGTGGACTCAAATGATGAAGGGGCTTTTATAGTTGTGGAAGCCTCAAAGTTTAAGACCGTTGGAGAGAAGACTATTTTGAGACTGGAACTGTCAAATGCTCTCAAAATTAGATCTTTTCAGAAGATTATCAGATTGAATCGGTATGACATGGAACTTATTAAGAAGGAAATCAGTGAAAATGATGTGTCAGTGTCTTATTCAGGTGGTGTCGTGCTTAAAAAGTCCATACGCAAGCCTAGCTGGAAGAAATTCTTCGTAGATTATTTTGTTCGAGAGAAAGTGTTAACGCAGGATGTTGAATTGCAGGAAATACATACTAATGAGCAAGTTGCAGACATATTTACTAAGACACTTGCCAAAGTGAAATTTGAAGTTTTTCGTAAAGGCTCTCGAAGTTATTGAGAAATAAGCTTGCACTAAGGGAGACTGTCAGAATTTAGTGCAACTTATTTTAATTTGAATTAGTTATGGAATATATGATATTCGTAATTTTCAAGAATATATTAGTTAGGAAATATATTTTAGATATCGTAATCAGTTGAATTTGAATAGTAGTATATTTTATTTTATTATCAGGATTTAGTTAGTTTATATTTTTTTAGTAGATATTATTTAGTATCTTGTATCCTATTTAAAAGTTGTGAATATCAATGAAGATTGAACATTCGATCGCAATTCTTTTTCTTATTCTTAAATCTGTATTCTTTCGTTGAGTAATAATATTTTCATATCTACTCACACTTTTGAGTGGTAGATATTGCGTCAACTGATTCCTAGAGACGTTCGATAACCTTTAGTAACCTTTTCTATTATTATGGGCTTTCTACTTGACTTTTTTCCCACTCTTAGATTCTTTATTTTTTAGCGTCTGACCTCAACTTTTACAGTGTTCATTGGGATTCTTCTGTGGGCCAAAATCAAGGGAAGCATGCTTTGTTTTACTTAAAGGTATGATTCTGTTGACGTTTCTGCTACTCTATTTCGATTTCTTTTAGTAATATTCTTCTCCTTATTTATAAGCAATAGCATATATTAATAATGAAAAAGTTATTGGAGGGAAATCAATTAAGCGTTGCAACAAGACAACCAATCTCACTTGTGAGATAAGGAAATTCTAAACCCAAACAGAAGGACCTCCAAACATTCTAGAGTGTCCTTAAAATCCATAGGAGTGGGTCTGCCGGTTAGTCTCGGAGATGACAATTCATAGTGATATTTCAACAAAAACACTTTAGTTGATACTTCAAATCAACCACATAGAACAGTTGAATGGCCGCGGGGAAGTGCCAAGGTCTATTCCATACCTAAATTAATTAAGGGCAGAATACATTTTTGGGTCTCTAGTATTTGAATTTAGTTTCAAAACTAACATGGAAGGACTGCCGCTTTTCTCTCCAAGCTAATCGTGTAGCAACGAGCTCTTTGGGCTTCACTTCCCTGCTCTAGTTCAAAACTAGCTAGGCATCTTCCTTAGCCTCTTTACCACGTTAGCGGGCTAACATTTATGCAATAGAAACAAAGACACAGGTAATGGGTTACCTACTCTTAACGGTCAAAGCATTTATGCAATAGAAACAAAGACACAGGTAATGGGTTACCTACTCTTAACGGTCAAAGCGAAACCTATCGTTCCGAATTAAAGAATTCAAAATGAATTAAAAAAAATTCCAAACGTACTCTTGATTAGTGCTTCTTGCAAAAAATCTATAGAGAAAATATATTTTACTTCAAATTCAAGTATAGCATAGTAATAGCTTACTACTTGTGCATTTCTATCTCTTCTAAGTATTCATAGAGTATGAATCTTCGCTATAGTAATGTAATATTAGGATAAAATCTTGTACTTCGCGTCACTTGACATATCTGTACTCAAAAGGCTTGAGGTTCAAATCTTCACTCTCGTCGTATTGAGTTCAACAAAACTATATTGAAATTAAAAATAAACATTCAGTGTGTAAACCCAGAAGGATTTTTCGGCTTCTAGAGAGCGGAAAGACCTTTGGCTTCTAGAAGAAGCATTTATGTAAGAGAGATAGATTGAGAGATCACTAAACTTGAGAGCCATTTTGGTGTGGAATTTGTTTTGCATTATTCTTTTCCATGTCCCAATTGGCCACAGCCTCTTTAACACATCCTTCTTCTTCTTCTTCTTCTTTTCCCTTATTCCTATAGATGCAATACAACACAAGCTGTAGCAACCCTAATGGGCTTCCCACTAGATTTGGAGACTGCAAATCCATTCAAAGTTTCATGA

mRNA sequence

ATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTGTCATTAGAATTGGAGCAACCAAAAGCTCAAATTCAATCATTGGAGGGTCATATCGACTTGAAGCCTAGCCATGTAGATGCTTTGTATATTTTGGGTGGACTTTACGTGGACTCAAATGATGAAGGGGCTTTTATAGTTGTGGAAGCCTCAAAGTTTAAGACCGTTGGAGAGAAGACTATTTTGAGACTGGAACTGTCAAATGCTCTCAAAATTAGATCTTTTCAGAAGATTATCAGATTGAATCGATGCAATACAACACAAGCTGTAGCAACCCTAATGGGCTTCCCACTAGATTTGGAGACTGCAAATCCATTCAAAGTTTCATGA

Coding sequence (CDS)

ATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTGTCATTAGAATTGGAGCAACCAAAAGCTCAAATTCAATCATTGGAGGGTCATATCGACTTGAAGCCTAGCCATGTAGATGCTTTGTATATTTTGGGTGGACTTTACGTGGACTCAAATGATGAAGGGGCTTTTATAGTTGTGGAAGCCTCAAAGTTTAAGACCGTTGGAGAGAAGACTATTTTGAGACTGGAACTGTCAAATGCTCTCAAAATTAGATCTTTTCAGAAGATTATCAGATTGAATCGATGCAATACAACACAAGCTGTAGCAACCCTAATGGGCTTCCCACTAGATTTGGAGACTGCAAATCCATTCAAAGTTTCATGA
Homology
[Close]
BLAST of CmoCh02G011290 vs. Swiss-Prot
Match: Y2245_ARATH (Uncharacterized TPR repeat-containing protein At2g32450 OS=Arabidopsis thaliana GN=At2g32450 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-09
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 1 

Query: 54  SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN 101
           +N+EG FIVVE+SKFKTVGEKT LR +L+ AL++R+FQ++ RL +C+
Sbjct: 498 ANEEGPFIVVESSKFKTVGEKTTLRPDLAIALQVRAFQRVTRLWKCD 544

[Close]
BLAST of CmoCh02G011290 vs. Swiss-Prot
Match: Y1515_ARATH (Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-08
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 57  EGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN 101
           EG FIVVE SKFKTVGEKT LR +L+ AL+IR+FQ++ RL +C+
Sbjct: 506 EGPFIVVEPSKFKTVGEKTTLRPDLATALQIRAFQRVTRLGKCD 549

[Close]
BLAST of CmoCh02G011290 vs. TrEMBL
Match: A0A0A0M0F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690180 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-11
Identity = 37/47 (78.72%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 54  SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN 101
           +N EG+FIVVEASKFKT+GEKT+LR ELSNAL+IR+FQKI RLNRC+
Sbjct: 499 ANGEGSFIVVEASKFKTLGEKTVLRPELSNALEIRAFQKITRLNRCD 545

[Close]
BLAST of CmoCh02G011290 vs. TrEMBL
Match: V9M4V0_MANES (Cold regulated protein 15b OS=Manihot esculenta GN=COR15b PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1 

Query: 54  SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN 101
           +N EGAFI+VE SKFKT+GEKT LRL+L+NAL+IR+FQ+I RL RC+
Sbjct: 499 ANGEGAFIIVEPSKFKTIGEKTTLRLDLANALQIRAFQRITRLGRCD 545

[Close]
BLAST of CmoCh02G011290 vs. TrEMBL
Match: A0A0B0NQ63_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_19192 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = 1 

Query: 54  SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN 101
           +N EGAF++VE SKFKTVGEKT LR +L +A++IR+FQ+I RL+RCN
Sbjct: 499 ANGEGAFVIVEPSKFKTVGEKTTLRQDLGSAIQIRAFQRITRLSRCN 545

[Close]
BLAST of CmoCh02G011290 vs. TrEMBL
Match: K4BVI4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 55  NDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCNTTQ 104
           N E AFI+VE SKFK+VGEKT LR +LS AL IRSFQ+I RLNRC+  Q
Sbjct: 500 NGEEAFIIVEPSKFKSVGEKTTLRADLSTALDIRSFQRITRLNRCDVDQ 548

[Close]
BLAST of CmoCh02G011290 vs. TrEMBL
Match: M0ZWP6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003764 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 55  NDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCNTTQ 104
           N E AFI+VE SKFK+VGEKT LR +LS AL IRSFQ+I RLNRC+  Q
Sbjct: 548 NGEEAFIIVEPSKFKSVGEKTTLRADLSTALDIRSFQRITRLNRCDVDQ 596

[Close]
BLAST of CmoCh02G011290 vs. TAIR10
Match: AT2G32450.1 (AT2G32450.1 Calcium-binding tetratricopeptide family protein)

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-10
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 1 

Query: 54  SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN 101
           +N+EG FIVVE+SKFKTVGEKT LR +L+ AL++R+FQ++ RL +C+
Sbjct: 498 ANEEGPFIVVESSKFKTVGEKTTLRPDLAIALQVRAFQRVTRLWKCD 544

[Close]
BLAST of CmoCh02G011290 vs. TAIR10
Match: AT1G05150.1 (AT1G05150.1 Calcium-binding tetratricopeptide family protein)

HSP 1 Score: 60.5 bits (145), Expect = 8.7e-10
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 57  EGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN 101
           EG FIVVE SKFKTVGEKT LR +L+ AL+IR+FQ++ RL +C+
Sbjct: 506 EGPFIVVEPSKFKTVGEKTTLRPDLATALQIRAFQRVTRLGKCD 549

[Close]
BLAST of CmoCh02G011290 vs. NCBI nr
Match: gi|778664340|ref|XP_004142533.2| (PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 5.7e-11
Identity = 37/47 (78.72%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 54  SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN 101
           +N EG+FIVVEASKFKT+GEKT+LR ELSNAL+IR+FQKI RLNRC+
Sbjct: 499 ANGEGSFIVVEASKFKTLGEKTVLRPELSNALEIRAFQKITRLNRCD 545

[Close]
BLAST of CmoCh02G011290 vs. NCBI nr
Match: gi|659125475|ref|XP_008462701.1| (PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 54  SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN 101
           +N EG+FIVVEASKFK++GE+T+LR ELSNAL+IR+FQKI RLNRC+
Sbjct: 499 ANGEGSFIVVEASKFKSIGERTVLRPELSNALEIRAFQKITRLNRCD 545

[Close]
BLAST of CmoCh02G011290 vs. NCBI nr
Match: gi|442022409|gb|AGC51780.1| (cold regulated protein 15b [Manihot esculenta])

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1 

Query: 54  SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN 101
           +N EGAFI+VE SKFKT+GEKT LRL+L+NAL+IR+FQ+I RL RC+
Sbjct: 499 ANGEGAFIIVEPSKFKTIGEKTTLRLDLANALQIRAFQRITRLGRCD 545

[Close]
BLAST of CmoCh02G011290 vs. NCBI nr
Match: gi|698504304|ref|XP_009797690.1| (PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Nicotiana sylvestris])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 55  NDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCNTTQ 104
           N E AFI+VE SKFKTVGEKT LR +LS AL IRSFQ+I RLNRC+  Q
Sbjct: 502 NGEEAFIIVEPSKFKTVGEKTTLRPDLSTALDIRSFQRITRLNRCDVDQ 550

[Close]
BLAST of CmoCh02G011290 vs. NCBI nr
Match: gi|658023955|ref|XP_008347381.1| (PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like, partial [Malus domestica])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1 

Query: 54  SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN 101
           +N EG+F+ VE SKFKTVGEKT LR EL+NAL+IR+FQ+I RL+RC+
Sbjct: 186 TNGEGSFVTVEPSKFKTVGEKTTLRQELANALEIRAFQRITRLSRCD 232

The following BLAST results are available for this feature:
BLAST of CmoCh02G011290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y2245_ARATH5.3e-0961.70Uncharacterized TPR repeat-containing protein At2g32450 OS=Arabidopsis thaliana ... [more]
Y1515_ARATH1.5e-0865.91Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana ... [more]
BLAST of CmoCh02G011290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0F9_CUCSA3.9e-1178.72Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690180 PE=4 SV=1[more]
V9M4V0_MANES1.3e-0970.21Cold regulated protein 15b OS=Manihot esculenta GN=COR15b PE=2 SV=1[more]
A0A0B0NQ63_GOSAR1.1e-0865.96Uncharacterized protein OS=Gossypium arboreum GN=F383_19192 PE=4 SV=1[more]
K4BVI4_SOLLC1.4e-0869.39Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
M0ZWP6_SOLTU1.4e-0869.39Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003764 PE=4 SV=1[more]
BLAST of CmoCh02G011290 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32450.13.0e-1061.70 Calcium-binding tetratricopeptide family protein[more]
AT1G05150.18.7e-1065.91 Calcium-binding tetratricopeptide family protein[more]
BLAST of CmoCh02G011290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664340|ref|XP_004142533.2|5.7e-1178.72PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Cucumis... [more]
gi|659125475|ref|XP_008462701.1|2.1e-1074.47PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Cucumis... [more]
gi|442022409|gb|AGC51780.1|1.8e-0970.21cold regulated protein 15b [Manihot esculenta][more]
gi|698504304|ref|XP_009797690.1|1.2e-0871.43PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Nicotia... [more]
gi|658023955|ref|XP_008347381.1|1.5e-0868.09PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like, partial... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G011290.1CmoCh02G011290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G011290Cucumber (Chinese Long) v3cmocucB0707
CmoCh02G011290Cucumber (Chinese Long) v3cmocucB0723
CmoCh02G011290Watermelon (97103) v2cmowmbB580
CmoCh02G011290Watermelon (97103) v2cmowmbB621
CmoCh02G011290Watermelon (97103) v2cmowmbB625
CmoCh02G011290Wax gourdcmowgoB0703
CmoCh02G011290Wax gourdcmowgoB0719
CmoCh02G011290Cucurbita moschata (Rifu)cmocmoB212
CmoCh02G011290Cucurbita moschata (Rifu)cmocmoB251
CmoCh02G011290Cucurbita moschata (Rifu)cmocmoB281
CmoCh02G011290Cucurbita moschata (Rifu)cmocmoB333
CmoCh02G011290Cucumber (Gy14) v1cgycmoB0603
CmoCh02G011290Cucumber (Gy14) v1cgycmoB0712
CmoCh02G011290Cucurbita maxima (Rimu)cmacmoB260
CmoCh02G011290Cucurbita maxima (Rimu)cmacmoB299
CmoCh02G011290Cucurbita maxima (Rimu)cmacmoB333
CmoCh02G011290Cucurbita maxima (Rimu)cmacmoB416
CmoCh02G011290Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G011290Wild cucumber (PI 183967)cmocpiB599
CmoCh02G011290Wild cucumber (PI 183967)cmocpiB611
CmoCh02G011290Cucumber (Chinese Long) v2cmocuB593
CmoCh02G011290Cucumber (Chinese Long) v2cmocuB603
CmoCh02G011290Melon (DHL92) v3.5.1cmomeB515
CmoCh02G011290Melon (DHL92) v3.5.1cmomeB567
CmoCh02G011290Watermelon (Charleston Gray)cmowcgB520
CmoCh02G011290Watermelon (Charleston Gray)cmowcgB557
CmoCh02G011290Watermelon (Charleston Gray)cmowcgB560
CmoCh02G011290Watermelon (97103) v1cmowmB558
CmoCh02G011290Watermelon (97103) v1cmowmB567
CmoCh02G011290Cucurbita pepo (Zucchini)cmocpeB546
CmoCh02G011290Cucurbita pepo (Zucchini)cmocpeB551
CmoCh02G011290Cucurbita pepo (Zucchini)cmocpeB557
CmoCh02G011290Cucurbita pepo (Zucchini)cmocpeB589
CmoCh02G011290Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G011290Bottle gourd (USVL1VR-Ls)cmolsiB520
CmoCh02G011290Bottle gourd (USVL1VR-Ls)cmolsiB557
CmoCh02G011290Bottle gourd (USVL1VR-Ls)cmolsiB559
CmoCh02G011290Cucumber (Gy14) v2cgybcmoB372
CmoCh02G011290Cucumber (Gy14) v2cgybcmoB618
CmoCh02G011290Melon (DHL92) v3.6.1cmomedB591
CmoCh02G011290Melon (DHL92) v3.6.1cmomedB649
CmoCh02G011290Melon (DHL92) v3.6.1cmomedB653
CmoCh02G011290Silver-seed gourdcarcmoB0412
CmoCh02G011290Silver-seed gourdcarcmoB0694
CmoCh02G011290Silver-seed gourdcarcmoB0734
CmoCh02G011290Silver-seed gourdcarcmoB1329