CmoCh02G011140 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G011140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr02 : 6759977 .. 6761668 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAATGGGTTCCTCCGCTATTTTCGGATTCTGATTGATCCGGCGCTTCACCAATGTCGGCTGCAACAAACCCTTGTTGCCATTCTCTCTTCTTTCGCTCTGCTCCTCCCAATTCCAGGTTTTCGATTAGGGTTCATTTAAACCCTCTGCTCCCCAGTTGTCCTCCCAATTCAACCATCCATTGCGTCAGTACTCTCTCCCGACGCCGCACAAATGTAAGCTCTCACTTCTCTCTTTCTCTCCACCCATAACAGAAACCAGGATTTATGATGTATGATTATTGGGTGTCTATTGATTTTGAAGCTTTTTCTCAACTTATGCGTTGCATTAATTCAAGTGGTAGTTCGGTTCGAATATGATTCTTATGGAGGGCTATTCCTTCTTCGAAGTCAGCCAATCCAGTGAGACAAGGAGAGATTGGGTGTCTAGTTTATACAAGGTAAATATATGTTCACATCATTTGAATCACTTTATACTCTTCAATTTTAGAGGATTTTATTTCTTGTCTCTCCTAAACAGTAGCTCTGTATCCTGTTTACTTAAATCCCGAGTGAAGTATATGTGTTTATGTTATGTATGAATGAAATGGGGAATGTAAAACTTGATGAAAGAAAATTGGATGAGGTAATAAAATAAGGACCAAGTATACTGGTTCTCATCTTTTCATTTAGTTGATCAAATTTGGAAATAAGCTATAATTCTCAGAACTACTGGTTCTCATCTTTTCATTTAGTTGATCAAATTTGGAAATAAGCTATAATTCATTTAGTTGATCAAATTTGGAAATAAGCTATAATTCTCAGAACTACTGGTTCTCATCTTTTCATTTAGTTGATCAAATTTGGAAATAAGCTATAATTCTCAGAACAGTTGACTAAATAACATGGCCAAGAAAACAGGCTGATGTGTGTGTTGGGTATGGCTCTTTTGAGTTATTTTGTATTCTTTATTTTAGTTTTGTAACATTTTGTTCTTTCCAGATTTTCTTTAGCAGTTTAGTGTTGTAGATATTCTAGTTTGCTATGCATCATCACGTTCAACAAGAGCAACTTGTCTATTTTATTATCTATAGTAATAACATTCAAAAAGTTGGTCGTGGTGTGGGAATTAGTGGTTTTGCTTGAACAATAGTCTCATAAATGGGATAACCGCACTTGGTTGCGTGTAGTATTTTGTAGATTTCTTACTGGTTGGGGAGGAGAACAAAACACCATTTATAAGGGGTGGAAACCTTTCCCTAGCAGACGCGTTTTAAAGCCTTGAGGAGAAGTTCGAAAGGGAAAGCGCAAAGAGGACAATATCTGCTAGCGGTGGGCCTGGGTCGTTACATATGCATCCTGGAATTATCCGGAATACTTTCAGTCTGTTTATGTCATTAAGTAATATTATATGAAACTGCTAACACTAGAGTTATCTTTTTCCAGGGAGGACAGCAACCAAGCGAGGAGGTTGGAACCTATGGGGGTTGGTAAAGTGCCTTCCGATGATGTTCACTTGAATGACTTCACAGAAGTTGAAGGTAAGGATGCTGAAGCTGGCGTCAGTATGGATGATGAGCTTGCAGATTCTGAAGGTGAAACGGATTCTAATGTGTATCGTGCAACTGCTACAACTGGAAGAAAGTTTAGGATGGTTGTGATTGAGATGGAAATGGCCAGGTTTGTTCTCTTTGTATTTGCTTTACTTTGA

mRNA sequence

ATGAGTAATGGGTTCCTCCGCTATTTTCGGATTCTGATTGATCCGGCGCTTCACCAATGTCGGCTGCAACAAACCCTTGTTGCCATTCTCTCTTCTTTCGCTCTGCTCCTCCCAATTCCAGTTCGGTTCGAATATGATTCTTATGGAGGGCTATTCCTTCTTCGAAGTCAGCCAATCCAGGAGGACAGCAACCAAGCGAGGAGGTTGGAACCTATGGGGGTTGGTAAAGTGCCTTCCGATGATGTTCACTTGAATGACTTCACAGAAGTTGAAGGTAAGGATGCTGAAGCTGGCGTCAGTATGGATGATGAGCTTGCAGATTCTGAAGGTGAAACGGATTCTAATGTGTATCGTGCAACTGCTACAACTGGAAGAAAGTTTAGGATGGTTGTGATTGAGATGGAAATGGCCAGGTTTGTTCTCTTTGTATTTGCTTTACTTTGA

Coding sequence (CDS)

ATGAGTAATGGGTTCCTCCGCTATTTTCGGATTCTGATTGATCCGGCGCTTCACCAATGTCGGCTGCAACAAACCCTTGTTGCCATTCTCTCTTCTTTCGCTCTGCTCCTCCCAATTCCAGTTCGGTTCGAATATGATTCTTATGGAGGGCTATTCCTTCTTCGAAGTCAGCCAATCCAGGAGGACAGCAACCAAGCGAGGAGGTTGGAACCTATGGGGGTTGGTAAAGTGCCTTCCGATGATGTTCACTTGAATGACTTCACAGAAGTTGAAGGTAAGGATGCTGAAGCTGGCGTCAGTATGGATGATGAGCTTGCAGATTCTGAAGGTGAAACGGATTCTAATGTGTATCGTGCAACTGCTACAACTGGAAGAAAGTTTAGGATGGTTGTGATTGAGATGGAAATGGCCAGGTTTGTTCTCTTTGTATTTGCTTTACTTTGA
Homology
[Close]
BLAST of CmoCh02G011140 vs. TrEMBL
Match: A0A0A0KQA8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139790 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.5e-13
Identity = 49/84 (58.33%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 61   EDSNQARRLEPMGVGKVPSDDVHLNDFTEVEGKDAEAG---------VSMDDELADSEGE 120
            ED NQA  LE MGVG  PSDDV LNDFTE +GKDAEAG          +M+DE ADS+ E
Sbjct: 1069 EDRNQASSLETMGVGGPPSDDVDLNDFTENQGKDAEAGRVNMDDLMQKAMEDEFADSDNE 1128

Query: 121  TDSNVYRATATTGRKFRMVVIEME 136
               +VYR   TTGRKFR+V +E E
Sbjct: 1129 VSPSVYR---TTGRKFRIVDLEDE 1149

[Close]
BLAST of CmoCh02G011140 vs. NCBI nr
Match: gi|659074348|ref|XP_008437555.1| (PREDICTED: protein timeless homolog [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 2.5e-13
Identity = 52/84 (61.90%), Postives = 58/84 (69.05%), Query Frame = 1 

Query: 61   EDSNQARRLEPMGVGKVPSDDVHLNDFTEVEGKDAEAG-VSMD--------DELADSEGE 120
            ED NQAR L+ MGVG  PSDDV LNDFTE +GKDAEAG VSMD        DE ADS+ E
Sbjct: 1114 EDRNQARSLDTMGVGGPPSDDVDLNDFTENQGKDAEAGRVSMDDLMQKAMEDEFADSDNE 1173

Query: 121  TDSNVYRATATTGRKFRMVVIEME 136
               +VYR   TTGRKFR+V +E E
Sbjct: 1174 VSPSVYR---TTGRKFRIVDLEDE 1194

[Close]
BLAST of CmoCh02G011140 vs. NCBI nr
Match: gi|700194724|gb|KGN49901.1| (hypothetical protein Csa_5G139790 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 9.4e-13
Identity = 49/84 (58.33%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 61   EDSNQARRLEPMGVGKVPSDDVHLNDFTEVEGKDAEAG---------VSMDDELADSEGE 120
            ED NQA  LE MGVG  PSDDV LNDFTE +GKDAEAG          +M+DE ADS+ E
Sbjct: 1069 EDRNQASSLETMGVGGPPSDDVDLNDFTENQGKDAEAGRVNMDDLMQKAMEDEFADSDNE 1128

Query: 121  TDSNVYRATATTGRKFRMVVIEME 136
               +VYR   TTGRKFR+V +E E
Sbjct: 1129 VSPSVYR---TTGRKFRIVDLEDE 1149

[Close]
BLAST of CmoCh02G011140 vs. NCBI nr
Match: gi|778698982|ref|XP_011654633.1| (PREDICTED: protein timeless homolog [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 9.4e-13
Identity = 49/84 (58.33%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 61   EDSNQARRLEPMGVGKVPSDDVHLNDFTEVEGKDAEAG---------VSMDDELADSEGE 120
            ED NQA  LE MGVG  PSDDV LNDFTE +GKDAEAG          +M+DE ADS+ E
Sbjct: 1114 EDRNQASSLETMGVGGPPSDDVDLNDFTENQGKDAEAGRVNMDDLMQKAMEDEFADSDNE 1173

Query: 121  TDSNVYRATATTGRKFRMVVIEME 136
               +VYR   TTGRKFR+V +E E
Sbjct: 1174 VSPSVYR---TTGRKFRIVDLEDE 1194

The following BLAST results are available for this feature:
BLAST of CmoCh02G011140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G011140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQA8_CUCSA6.5e-1358.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139790 PE=4 SV=1[more]
BLAST of CmoCh02G011140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh02G011140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074348|ref|XP_008437555.1|2.5e-1361.90PREDICTED: protein timeless homolog [Cucumis melo][more]
gi|700194724|gb|KGN49901.1|9.4e-1358.33hypothetical protein Csa_5G139790 [Cucumis sativus][more]
gi|778698982|ref|XP_011654633.1|9.4e-1358.33PREDICTED: protein timeless homolog [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G011140.1CmoCh02G011140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G011140CmaCh02G010930Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G011140Cla004923Watermelon (97103) v1cmowmB567
CmoCh02G011140Csa5G139790Cucumber (Chinese Long) v2cmocuB603
CmoCh02G011140MELO3C005855Melon (DHL92) v3.5.1cmomeB515
CmoCh02G011140ClCG01G000730Watermelon (Charleston Gray)cmowcgB520
CmoCh02G011140CSPI05G03510Wild cucumber (PI 183967)cmocpiB611
CmoCh02G011140Lsi09G000560Bottle gourd (USVL1VR-Ls)cmolsiB520
CmoCh02G011140Cp4.1LG05g06120Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G011140MELO3C005855.2Melon (DHL92) v3.6.1cmomedB591
CmoCh02G011140CsaV3_5G000860Cucumber (Chinese Long) v3cmocucB0723
CmoCh02G011140Cla97C01G000810Watermelon (97103) v2cmowmbB580
CmoCh02G011140CsGy5G000760Cucumber (Gy14) v2cgybcmoB618
CmoCh02G011140Carg14041Silver-seed gourdcarcmoB0694
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G011140Cucurbita pepo (Zucchini)cmocpeB546
CmoCh02G011140Cucurbita pepo (Zucchini)cmocpeB551
CmoCh02G011140Cucurbita pepo (Zucchini)cmocpeB557
CmoCh02G011140Cucurbita pepo (Zucchini)cmocpeB589
CmoCh02G011140Bottle gourd (USVL1VR-Ls)cmolsiB557
CmoCh02G011140Bottle gourd (USVL1VR-Ls)cmolsiB567
CmoCh02G011140Cucumber (Gy14) v2cgybcmoB372
CmoCh02G011140Cucumber (Gy14) v2cgybcmoB498
CmoCh02G011140Melon (DHL92) v3.6.1cmomedB649
CmoCh02G011140Melon (DHL92) v3.6.1cmomedB653
CmoCh02G011140Melon (DHL92) v3.6.1cmomedB656
CmoCh02G011140Silver-seed gourdcarcmoB0734
CmoCh02G011140Silver-seed gourdcarcmoB1329
CmoCh02G011140Cucumber (Chinese Long) v3cmocucB0707
CmoCh02G011140Cucumber (Chinese Long) v3cmocucB0715
CmoCh02G011140Watermelon (97103) v2cmowmbB621
CmoCh02G011140Watermelon (97103) v2cmowmbB625
CmoCh02G011140Wax gourdcmowgoB0719
CmoCh02G011140Cucurbita moschata (Rifu)cmocmoB212
CmoCh02G011140Cucurbita moschata (Rifu)cmocmoB251
CmoCh02G011140Cucurbita moschata (Rifu)cmocmoB281
CmoCh02G011140Cucurbita moschata (Rifu)cmocmoB333
CmoCh02G011140Cucumber (Gy14) v1cgycmoB0603
CmoCh02G011140Cucumber (Gy14) v1cgycmoB0712
CmoCh02G011140Cucurbita maxima (Rimu)cmacmoB260
CmoCh02G011140Cucurbita maxima (Rimu)cmacmoB299
CmoCh02G011140Cucurbita maxima (Rimu)cmacmoB333
CmoCh02G011140Cucurbita maxima (Rimu)cmacmoB416
CmoCh02G011140Wild cucumber (PI 183967)cmocpiB599
CmoCh02G011140Cucumber (Chinese Long) v2cmocuB593
CmoCh02G011140Melon (DHL92) v3.5.1cmomeB567
CmoCh02G011140Watermelon (Charleston Gray)cmowcgB557
CmoCh02G011140Watermelon (Charleston Gray)cmowcgB560
CmoCh02G011140Watermelon (97103) v1cmowmB558