CmoCh02G011070 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G011070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding protein pno1
Location	Cmo_Chr02 : 6697687 .. 6698361 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCTACTGAAGTCCCCATCTCCATGGAAGTGGAAGCAGTTCCAAGTAAATCGACAACTGAAGTCGGCATCTTGCCTCCAAAACCACTGTTTGAACCTCTAAAGCCTCATGAAATGAATGATGGCCGAGTTCAGTTCCGGAAGGTATCTGTTCCTCCACATCGCTATTCTCCTCTCAAGAAAGCATGGATGGAGATCTACACCCCAATATACGAGCAGATGAAAATCGACATCCGTATGAACCTCAAAGCTCGTAAAGTCGAACTGAAAACCAGAGCAGACACACCAGACATCAGTAACTTGCAAAAGTGTGCAGATTTTGTCCATGCCTTCATGCTGGGTTTTGATATAATTGACGCCATTGCACTCTTACGAGTGGATGAACTCTACGTAGAATCTTTCGAGATTAAAGATGTTAAAACACTTCGAGGTGAGCATTTGTCCCGTGCCATAGGCCGATTGTCTGGTAAAGCTGGAAAAACTAAGTTCGCCATTGAAAATGCTACAAAGACGAGGATAGTCATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCCAACATCAAAATTGCTAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCCCCTGCAGGTAAAGTTTACTCGAAATTAAGAGCAGTTACTGCTAGATTGGCTGAAAGGTTTTGA

mRNA sequence

ATGCAGTCTACTGAAGTCCCCATCTCCATGGAAGTGGAAGCAGTTCCAAGTAAATCGACAACTGAAGTCGGCATCTTGCCTCCAAAACCACTGTTTGAACCTCTAAAGCCTCATGAAATGAATGATGGCCGAGTTCAGTTCCGGAAGGTATCTGTTCCTCCACATCGCTATTCTCCTCTCAAGAAAGCATGGATGGAGATCTACACCCCAATATACGAGCAGATGAAAATCGACATCCGTATGAACCTCAAAGCTCGTAAAGTCGAACTGAAAACCAGAGCAGACACACCAGACATCAGTAACTTGCAAAAGTGTGCAGATTTTGTCCATGCCTTCATGCTGGGTTTTGATATAATTGACGCCATTGCACTCTTACGAGTGGATGAACTCTACGTAGAATCTTTCGAGATTAAAGATGTTAAAACACTTCGAGGTGAGCATTTGTCCCGTGCCATAGGCCGATTGTCTGGTAAAGCTGGAAAAACTAAGTTCGCCATTGAAAATGCTACAAAGACGAGGATAGTCATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCCAACATCAAAATTGCTAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCCCCTGCAGGTAAAGTTTACTCGAAATTAAGAGCAGTTACTGCTAGATTGGCTGAAAGGTTTTGA

Coding sequence (CDS)

ATGCAGTCTACTGAAGTCCCCATCTCCATGGAAGTGGAAGCAGTTCCAAGTAAATCGACAACTGAAGTCGGCATCTTGCCTCCAAAACCACTGTTTGAACCTCTAAAGCCTCATGAAATGAATGATGGCCGAGTTCAGTTCCGGAAGGTATCTGTTCCTCCACATCGCTATTCTCCTCTCAAGAAAGCATGGATGGAGATCTACACCCCAATATACGAGCAGATGAAAATCGACATCCGTATGAACCTCAAAGCTCGTAAAGTCGAACTGAAAACCAGAGCAGACACACCAGACATCAGTAACTTGCAAAAGTGTGCAGATTTTGTCCATGCCTTCATGCTGGGTTTTGATATAATTGACGCCATTGCACTCTTACGAGTGGATGAACTCTACGTAGAATCTTTCGAGATTAAAGATGTTAAAACACTTCGAGGTGAGCATTTGTCCCGTGCCATAGGCCGATTGTCTGGTAAAGCTGGAAAAACTAAGTTCGCCATTGAAAATGCTACAAAGACGAGGATAGTCATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCCAACATCAAAATTGCTAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCCCCTGCAGGTAAAGTTTACTCGAAATTAAGAGCAGTTACTGCTAGATTGGCTGAAAGGTTTTGA

Homology

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BLAST of CmoCh02G011070 vs. Swiss-Prot
Match: PNO1_DROME (RNA-binding protein pno1 OS=Drosophila melanogaster GN=l(1)G0004 PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.8e-66
Identity = 122/187 (65.24%), Postives = 156/187 (83.42%), Query Frame = 1


Query: 37  PHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADT 96
           P +    R + RKVSVPPHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +T
Sbjct: 53  PPKAKRARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPET 112

Query: 97  PDISNLQKCADFVHAFMLGFDIIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLS 156
           PDI+NLQ+ ADFV AF+ GF++ DA+ALLR+++L+VESFEIKDVKTLRG+H SRAIGRL+
Sbjct: 113 PDIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLA 172

Query: 157 GKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAV 216
           GK G+TKF IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LRAV
Sbjct: 173 GKGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAV 232

Query: 217 TARLAER 224
            +RL+ER
Sbjct: 233 ASRLSER 239

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BLAST of CmoCh02G011070 vs. Swiss-Prot
Match: PNO1_DROPS (RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura GN=l(1)G0004 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.2e-65
Identity = 119/178 (66.85%), Postives = 153/178 (85.96%), Query Frame = 1


Query: 46  QFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKC 105
           + RKVSVPPHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +TPDI+NLQK 
Sbjct: 60  ELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQKG 119

Query: 106 ADFVHAFMLGFDIIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFA 165
           ADFV AF+ GF++ DA+ALLR+++L+VE+FEIKDVKTLRG+H SRAIGRL+GK G+TKF 
Sbjct: 120 ADFVKAFLCGFEVDDALALLRLEDLFVETFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFT 179

Query: 166 IENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAER 224
           IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LR+V +RL+ER
Sbjct: 180 IENVTKTRIVLADSKIHILGSYQNIQLARRAICNLILGSPPSKVYGNLRSVASRLSER 237

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BLAST of CmoCh02G011070 vs. Swiss-Prot
Match: PNO1_NEMVE (RNA-binding protein pno1 OS=Nematostella vectensis GN=pno1 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.5e-65
Identity = 118/196 (60.20%), Postives = 157/196 (80.10%), Query Frame = 1


Query: 29  KPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKV 88
           +P F P+K  ++  G+ + RK+ VP HRY+PLK+ WM+I+TP+ E +K+ IR NL +R V
Sbjct: 43  RPSFPPVKAQKLAGGKSETRKIPVPSHRYTPLKENWMKIFTPVVEHLKLQIRFNLGSRHV 102

Query: 89  ELKTRADTPDISNLQKCADFVHAFMLGFDIIDAIALLRVDELYVESFEIKDVKTLRGEHL 148
           E++   +T DI  +QK ADFV AF+LGF++ DA+AL+R+D+L++ESFEI DVK L+G+HL
Sbjct: 103 EIRASKETSDIGAVQKAADFVQAFILGFEVEDALALIRLDDLFLESFEIADVKPLKGDHL 162

Query: 149 SRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGK 208
           SRAIGR++GK GKTKF IEN TKTRIV+A+TKIHILGSF NIKIAR ++C+LILGSP  K
Sbjct: 163 SRAIGRVAGKGGKTKFTIENVTKTRIVLAETKIHILGSFQNIKIARTAICNLILGSPPSK 222

Query: 209 VYSKLRAVTARLAERF 225
           VY  +RAV +R AERF
Sbjct: 223 VYGNMRAVASRSAERF 238

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BLAST of CmoCh02G011070 vs. Swiss-Prot
Match: PNO1_CHICK (RNA-binding protein PNO1 OS=Gallus gallus GN=PNO1 PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.7e-64
Identity = 122/209 (58.37%), Postives = 161/209 (77.03%), Query Frame = 1


Query: 17  SKSTTEVGILPPK-PLFEPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQM 76
           ++S    G  P K P F PL    +  G+ + RKV VP +RY+PLK+ WM+I+TPI E +
Sbjct: 34  AESAEAAGPQPSKRPAFPPLPAAALGVGKGEVRKVPVPANRYTPLKENWMKIFTPIVEHL 93

Query: 77  KIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIIDAIALLRVDELYVESF 136
           ++ IR NLK R VE+KT ++T D+S L K ADFV AF+LGF + DA+AL+R+D+L++ESF
Sbjct: 94  QLQIRFNLKTRNVEIKTCSETKDLSALTKAADFVKAFILGFQVEDALALIRLDDLFLESF 153

Query: 137 EIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARD 196
           E+ DVK L+G+HLSRAIGR++GK GKTKF IEN T+TRIV+AD+KIHILGSF NIK+AR 
Sbjct: 154 EVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADSKIHILGSFQNIKMART 213

Query: 197 SLCSLILGSPAGKVYSKLRAVTARLAERF 225
           ++C+LILGSP  KVY  +RAV +R AERF
Sbjct: 214 AICNLILGSPPSKVYGNIRAVASRAAERF 242

[Close]

BLAST of CmoCh02G011070 vs. Swiss-Prot
Match: PNO1_ORYLA (RNA-binding protein PNO1 OS=Oryzias latipes GN=pno1 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.8e-63
Identity = 124/217 (57.14%), Postives = 165/217 (76.04%), Query Frame = 1


Query: 8   ISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEI 67
           I+MEVE  P+K          +P F P+   ++  G  + RKV+VP HRY+PLK+ W++I
Sbjct: 39  ITMEVEQ-PNK----------RPHFPPISADKLR-GPDEMRKVAVPAHRYTPLKENWLKI 98

Query: 68  YTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIIDAIALLRV 127
           +TPI E +++ +R NLK R VE+KT  +T DI+ L K ADF+ AF+LGF + DA+AL+R+
Sbjct: 99  FTPIVENLQLQVRFNLKTRNVEIKTCKETQDIAALTKAADFIKAFVLGFQVDDAMALIRL 158

Query: 128 DELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSF 187
           DEL++ESF++ DVK L+G+HLSRAIGR++GK GKTKF IEN TKTRIV+ADTKIHILGSF
Sbjct: 159 DELFLESFDVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTKTRIVLADTKIHILGSF 218

Query: 188 ANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
            NIK+AR ++C+LILGSP  KVY  +RAV +R AERF
Sbjct: 219 QNIKMARTAICNLILGSPPSKVYGNIRAVASRTAERF 243

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BLAST of CmoCh02G011070 vs. TrEMBL
Match: A0A0A0KQC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139880 PE=4 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 2.6e-114
Identity = 212/224 (94.64%), Postives = 219/224 (97.77%), Query Frame = 1


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE V SK+ TE+G LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRADTPD+SNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of CmoCh02G011070 vs. TrEMBL
Match: M5W0L8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009897mg PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 4.8e-108
Identity = 200/224 (89.29%), Postives = 212/224 (94.64%), Query Frame = 1


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS E P+SMEVEAVPSK ++    LPPKP+FEPLK HEM+DGRVQFRKVSVPPHRYSPL
Sbjct: 49  MQSNEAPVSMEVEAVPSKPSSASAALPPKPIFEPLKAHEMSDGRVQFRKVSVPPHRYSPL 108

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KK WMEIYTP+YEQMKIDIRMNLK RKVELK+RADTPD+SNLQKC+DFV AFMLGFD+ID
Sbjct: 109 KKVWMEIYTPVYEQMKIDIRMNLKGRKVELKSRADTPDVSNLQKCSDFVQAFMLGFDVID 168

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLR+DELYVESFEIKDVKTLRGEHLSRAIGRLSGK GKTKFAIENATKTRIVIADTK
Sbjct: 169 AIALLRMDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTK 228

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIK+ARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 229 IHILGSFANIKVARDSLCSLILGSPAGKVYSKLRAVTARLAERF 272

[Close]

BLAST of CmoCh02G011070 vs. TrEMBL
Match: M5WCN6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011086mg PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 2.4e-107
Identity = 198/224 (88.39%), Postives = 212/224 (94.64%), Query Frame = 1


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS E P+SMEVEAVPS+ ++    LPPKP+FEPLK HEM+DGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSNEAPVSMEVEAVPSEPSSASAALPPKPIFEPLKAHEMSDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KK W++IYTP+YEQMKIDIRMNLK RKVELKTRADTPD+SNLQKC+DFV AFMLGFD+ID
Sbjct: 61  KKVWLDIYTPVYEQMKIDIRMNLKGRKVELKTRADTPDVSNLQKCSDFVQAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLR+DELYVESFEIKDVKTLRGEHLSRAIGRLSGK GKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRMDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIK+ARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKVARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of CmoCh02G011070 vs. TrEMBL
Match: A0A0A0L7D9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045150 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 5.3e-107
Identity = 202/224 (90.18%), Postives = 211/224 (94.20%), Query Frame = 1


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS E   SM+VE + +++   V  LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSNEASTSMDVETISTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWM+IYTPIY+QMKIDIRMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFD+ID
Sbjct: 61  KKAWMDIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of CmoCh02G011070 vs. TrEMBL
Match: V4SEW4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029250mg PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 3.8e-105
Identity = 197/216 (91.20%), Postives = 207/216 (95.83%), Query Frame = 1


Query: 9   SMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIY 68
           SM+VE V S++  E G LPPKPLFEPLK HEM+DGRVQFRKV+VPPHRYSPLKK WM+IY
Sbjct: 4   SMDVETVSSQTQNEPGPLPPKPLFEPLKAHEMSDGRVQFRKVNVPPHRYSPLKKVWMDIY 63

Query: 69  TPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIIDAIALLRVD 128
           TPI+EQMKIDIRMNLKAR+VELKTRADTPDISNLQKCADFVHAFMLGFD+IDAIALLR+D
Sbjct: 64  TPIFEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLD 123

Query: 129 ELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFA 188
           ELYVESFEIKDVKTLRGEHLSRAIGRLSGK GKTKFAIENATKTRIVIADTKIHILGSFA
Sbjct: 124 ELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTKIHILGSFA 183

Query: 189 NIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           NIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 184 NIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 219

[Close]

BLAST of CmoCh02G011070 vs. TAIR10
Match: AT3G13230.1 (AT3G13230.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 344.4 bits (882), Expect = 5.4e-95
Identity = 173/213 (81.22%), Postives = 195/213 (91.55%), Query Frame = 1


Query: 10  MEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYT 69
           MEVE     +      LPPKP F+PLK HEM+DG+VQFRK++VPP+RYSPLKKAW++IYT
Sbjct: 7   MEVETATEGTVP----LPPKPTFKPLKAHEMSDGKVQFRKIAVPPNRYSPLKKAWLDIYT 66

Query: 70  PIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIIDAIALLRVDE 129
           PIY+QMK+DIRMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFDI DAI+LLR+DE
Sbjct: 67  PIYDQMKVDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDIPDAISLLRMDE 126

Query: 130 LYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFAN 189
           LYVESFEIKDVKTL+GEHLSRAIGRLSGK GKTKFAIEN+TKTRIVIADT+IHILG+F+N
Sbjct: 127 LYVESFEIKDVKTLKGEHLSRAIGRLSGKGGKTKFAIENSTKTRIVIADTRIHILGAFSN 186

Query: 190 IKIARDSLCSLILGSPAGKVYSKLRAVTARLAE 223
           IK+AR SLCSLI+GSPAGKVYSKLR+V+ARL E
Sbjct: 187 IKVARSSLCSLIMGSPAGKVYSKLRSVSARLNE 215

[Close]

BLAST of CmoCh02G011070 vs. NCBI nr
Match: gi|449456341|ref|XP_004145908.1| (PREDICTED: RNA-binding protein pno1-like [Cucumis sativus])

HSP 1 Score: 419.5 bits (1077), Expect = 3.8e-114
Identity = 212/224 (94.64%), Postives = 219/224 (97.77%), Query Frame = 1


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE V SK+ TE+G LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRADTPD+SNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of CmoCh02G011070 vs. NCBI nr
Match: gi|659074332|ref|XP_008437547.1| (PREDICTED: RNA-binding protein pno1-like [Cucumis melo])

HSP 1 Score: 419.1 bits (1076), Expect = 4.9e-114
Identity = 213/224 (95.09%), Postives = 219/224 (97.77%), Query Frame = 1


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE V SK+ TEVG +PPKP FEPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRA+TPDISNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of CmoCh02G011070 vs. NCBI nr
Match: gi|659096262|ref|XP_008449001.1| (PREDICTED: RNA-binding protein pno1 [Cucumis melo])

HSP 1 Score: 402.9 bits (1034), Expect = 3.6e-109
Identity = 205/224 (91.52%), Postives = 213/224 (95.09%), Query Frame = 1


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTE   SMEVE + +++   V  LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEASTSMEVETISTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KKAWMEIYTPIY+QMKID+RMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYDQMKIDVRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of CmoCh02G011070 vs. NCBI nr
Match: gi|595827477|ref|XP_007205707.1| (hypothetical protein PRUPE_ppa009897mg [Prunus persica])

HSP 1 Score: 398.7 bits (1023), Expect = 6.9e-108
Identity = 200/224 (89.29%), Postives = 212/224 (94.64%), Query Frame = 1


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS E P+SMEVEAVPSK ++    LPPKP+FEPLK HEM+DGRVQFRKVSVPPHRYSPL
Sbjct: 49  MQSNEAPVSMEVEAVPSKPSSASAALPPKPIFEPLKAHEMSDGRVQFRKVSVPPHRYSPL 108

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KK WMEIYTP+YEQMKIDIRMNLK RKVELK+RADTPD+SNLQKC+DFV AFMLGFD+ID
Sbjct: 109 KKVWMEIYTPVYEQMKIDIRMNLKGRKVELKSRADTPDVSNLQKCSDFVQAFMLGFDVID 168

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLR+DELYVESFEIKDVKTLRGEHLSRAIGRLSGK GKTKFAIENATKTRIVIADTK
Sbjct: 169 AIALLRMDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTK 228

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIK+ARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 229 IHILGSFANIKVARDSLCSLILGSPAGKVYSKLRAVTARLAERF 272

[Close]

BLAST of CmoCh02G011070 vs. NCBI nr
Match: gi|645215984|ref|XP_008218975.1| (PREDICTED: RNA-binding protein pno1-like [Prunus mume])

HSP 1 Score: 397.9 bits (1021), Expect = 1.2e-107
Identity = 200/224 (89.29%), Postives = 212/224 (94.64%), Query Frame = 1


Query: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS E PISMEVEAVPS+ ++    LPPKP+FEPLK HEM+DGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSNEAPISMEVEAVPSEPSSASAALPPKPIFEPLKAHEMSDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120
           KK WM+IYTP+YEQMKIDIRMNLK RKVELKTRADTPD+SNLQKC+DFV AFMLGFD+ID
Sbjct: 61  KKVWMDIYTPVYEQMKIDIRMNLKGRKVELKTRADTPDVSNLQKCSDFVQAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLR+DELYVESFEIKDVKTLRGEHLSRAIGRLSGK GKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRMDELYVESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIK+ARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKVARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

The following BLAST results are available for this feature:

BLAST of CmoCh02G011070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PNO1_DROME	3.8e-66	65.24	RNA-binding protein pno1 OS=Drosophila melanogaster GN=l(1)G0004 PE=2 SV=1	[more]
PNO1_DROPS	4.2e-65	66.85	RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura GN=l(1)G0004 ...	[more]
PNO1_NEMVE	5.5e-65	60.20	RNA-binding protein pno1 OS=Nematostella vectensis GN=pno1 PE=3 SV=1	[more]
PNO1_CHICK	4.7e-64	58.37	RNA-binding protein PNO1 OS=Gallus gallus GN=PNO1 PE=2 SV=1	[more]
PNO1_ORYLA	1.8e-63	57.14	RNA-binding protein PNO1 OS=Oryzias latipes GN=pno1 PE=2 SV=1	[more]

BLAST of CmoCh02G011070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQC5_CUCSA	2.6e-114	94.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139880 PE=4 SV=1	[more]
M5W0L8_PRUPE	4.8e-108	89.29	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009897mg PE=4 SV=1	[more]
M5WCN6_PRUPE	2.4e-107	88.39	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011086mg PE=4 SV=1	[more]
A0A0A0L7D9_CUCSA	5.3e-107	90.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045150 PE=4 SV=1	[more]
V4SEW4_9ROSI	3.8e-105	91.20	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029250mg PE=4 SV=1	[more]

BLAST of CmoCh02G011070 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13230.1	5.4e-95	81.22	RNA-binding KH domain-containing protein	[more]

BLAST of CmoCh02G011070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456341\|ref\|XP_004145908.1\|	3.8e-114	94.64	PREDICTED: RNA-binding protein pno1-like [Cucumis sativus]	[more]
gi\|659074332\|ref\|XP_008437547.1\|	4.9e-114	95.09	PREDICTED: RNA-binding protein pno1-like [Cucumis melo]	[more]
gi\|659096262\|ref\|XP_008449001.1\|	3.6e-109	91.52	PREDICTED: RNA-binding protein pno1 [Cucumis melo]	[more]
gi\|595827477\|ref\|XP_007205707.1\|	6.9e-108	89.29	hypothetical protein PRUPE_ppa009897mg [Prunus persica]	[more]
gi\|645215984\|ref\|XP_008218975.1\|	1.2e-107	89.29	PREDICTED: RNA-binding protein pno1-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004087	KH_dom
IPR004088	KH_dom_type_1

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G011070.1	CmoCh02G011070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 129..202 score: 1.
IPR004088	K Homology domain, type 1	GENE3D	G3DSA:3.30.1370.10		coord: 131..215 score: 9.3
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 150..197 score: 1.
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 129..223 score: 3.32
None	No IPR available	PANTHER	PTHR12826	FAMILY NOT NAMED	coord: 21..224 score: 3.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G011070	Cucsa.201760	Cucumber (Gy14) v1	cgycmoB0603
CmoCh02G011070	CmaCh02G010890	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G011070	Cla004932	Watermelon (97103) v1	cmowmB567
CmoCh02G011070	Csa5G139880	Cucumber (Chinese Long) v2	cmocuB603
CmoCh02G011070	MELO3C005848	Melon (DHL92) v3.5.1	cmomeB515
CmoCh02G011070	ClCG01G000820	Watermelon (Charleston Gray)	cmowcgB520
CmoCh02G011070	CSPI05G03600	Wild cucumber (PI 183967)	cmocpiB611
CmoCh02G011070	Lsi09G000700	Bottle gourd (USVL1VR-Ls)	cmolsiB520
CmoCh02G011070	Cp4.1LG05g06390	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G011070	MELO3C005848.2	Melon (DHL92) v3.6.1	cmomedB591
CmoCh02G011070	CsaV3_5G000960	Cucumber (Chinese Long) v3	cmocucB0723
CmoCh02G011070	Cla97C01G000900	Watermelon (97103) v2	cmowmbB580
CmoCh02G011070	Bhi12G000672	Wax gourd	cmowgoB0715
CmoCh02G011070	CsGy5G000850	Cucumber (Gy14) v2	cgybcmoB618
CmoCh02G011070	Carg08392	Silver-seed gourd	carcmoB0971

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G011070	Cucurbita pepo (Zucchini)	cmocpeB546
CmoCh02G011070	Cucurbita pepo (Zucchini)	cmocpeB551
CmoCh02G011070	Cucurbita pepo (Zucchini)	cmocpeB557
CmoCh02G011070	Cucurbita pepo (Zucchini)	cmocpeB589
CmoCh02G011070	Bottle gourd (USVL1VR-Ls)	cmolsiB557
CmoCh02G011070	Bottle gourd (USVL1VR-Ls)	cmolsiB567
CmoCh02G011070	Cucumber (Gy14) v2	cgybcmoB372
CmoCh02G011070	Cucumber (Gy14) v2	cgybcmoB498
CmoCh02G011070	Melon (DHL92) v3.6.1	cmomedB649
CmoCh02G011070	Melon (DHL92) v3.6.1	cmomedB653
CmoCh02G011070	Melon (DHL92) v3.6.1	cmomedB656
CmoCh02G011070	Silver-seed gourd	carcmoB0783
CmoCh02G011070	Silver-seed gourd	carcmoB1329
CmoCh02G011070	Cucumber (Chinese Long) v3	cmocucB0707
CmoCh02G011070	Cucumber (Chinese Long) v3	cmocucB0715
CmoCh02G011070	Watermelon (97103) v2	cmowmbB621
CmoCh02G011070	Watermelon (97103) v2	cmowmbB625
CmoCh02G011070	Wax gourd	cmowgoB0719
CmoCh02G011070	Cucurbita moschata (Rifu)	cmocmoB212
CmoCh02G011070	Cucurbita moschata (Rifu)	cmocmoB251
CmoCh02G011070	Cucurbita moschata (Rifu)	cmocmoB281
CmoCh02G011070	Cucurbita moschata (Rifu)	cmocmoB333
CmoCh02G011070	Cucumber (Gy14) v1	cgycmoB0712
CmoCh02G011070	Cucurbita maxima (Rimu)	cmacmoB260
CmoCh02G011070	Cucurbita maxima (Rimu)	cmacmoB299
CmoCh02G011070	Cucurbita maxima (Rimu)	cmacmoB333
CmoCh02G011070	Cucurbita maxima (Rimu)	cmacmoB416
CmoCh02G011070	Wild cucumber (PI 183967)	cmocpiB599
CmoCh02G011070	Cucumber (Chinese Long) v2	cmocuB593
CmoCh02G011070	Melon (DHL92) v3.5.1	cmomeB567
CmoCh02G011070	Watermelon (Charleston Gray)	cmowcgB557
CmoCh02G011070	Watermelon (Charleston Gray)	cmowcgB560
CmoCh02G011070	Watermelon (97103) v1	cmowmB558